mRNA_Ecto-sp13_S_contig19994.6503.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19994.6503.1
Unique NamemRNA_Ecto-sp13_S_contig19994.6503.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19994.6503.1 vs. uniprot
Match: A0A6H5KH06_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH06_9PHAE)

HSP 1 Score: 291 bits (746), Expect = 3.290e-97
Identity = 159/190 (83.68%), Postives = 165/190 (86.84%), Query Frame = 1 
Query:   25 TSIFLGLMFVVALLLVVLQSSSSEIQLGNTHLLAPGVPANEGCFESEGAMLVCLAKAATIATPXXXXXXXXXXXXXTTDTASTPGTGTESALEIARSQMLYDSGDMPMTSRDVQLHDVTTPFAASPPAAVCHPDAHDAMEMWVGQLEAILGELALHAQEEERSTGALIAQGLRKIAAGIYVYPEGITSKV 594
            TSIFLGLM VV LLLVVLQSSSSEIQLGNTHLLAPGVPANEGCF+SEGAMLVCLAKAATIAT              T DT STPGTGTESAL+IARSQMLYDSGD+PMTSR VQLHDVTTP AASPPAAVCHPDAHDA++MWVGQLEAILGELALHAQ+EERS GALIAQGLRKIAAGIY  P GIT KV
Sbjct:    2 TSIFLGLMSVVGLLLVVLQSSSSEIQLGNTHLLAPGVPANEGCFKSEGAMLVCLAKAATIAT----------GVVSTADTGSTPGTGTESALQIARSQMLYDSGDLPMTSRYVQLHDVTTPVAASPPAAVCHPDAHDAIDMWVGQLEAILGELALHAQKEERSAGALIAQGLRKIAAGIY--PGGITGKV 179
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19994.6503.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KH06_9PHAE3.290e-9783.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19994contigEcto-sp13_S_contig19994:2027..2620 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size596
Hectar predicted targeting categorysignal peptide
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-08_002670.1
Cds size594
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463005.2111645-CDS-Ecto-sp13_S_contig19994:2026..26201681463005.2111645-CDS-Ecto-sp13_S_contig19994:2026..2620Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19994 2027..2620 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19994.6503.1prot_Ecto-sp13_S_contig19994.6503.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19994 2027..2620 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19994.6503.1

>prot_Ecto-sp13_S_contig19994.6503.1 ID=prot_Ecto-sp13_S_contig19994.6503.1|Name=mRNA_Ecto-sp13_S_contig19994.6503.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=198bp
MRFTCSFATSIFLGLMFVVALLLVVLQSSSSEIQLGNTHLLAPGVPANEG
CFESEGAMLVCLAKAATIATPTIATPTTATGVVSTTDTASTPGTGTESAL
EIARSQMLYDSGDMPMTSRDVQLHDVTTPFAASPPAAVCHPDAHDAMEMW
VGQLEAILGELALHAQEEERSTGALIAQGLRKIAAGIYVYPEGITSKV
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mRNA from alignment at Ecto-sp13_S_contig19994:2027..2620+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19994.6503.1 ID=mRNA_Ecto-sp13_S_contig19994.6503.1|Name=mRNA_Ecto-sp13_S_contig19994.6503.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=594bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19994:2027..2620+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCTTTACGTGCTCTTTCGCGACTTCGATCTTCCTCGGACTCATGTT
TGTTGTGGCGCTTCTTCTGGTGGTCTTGCAGAGCAGTAGCTCTGAGATCC
AACTCGGCAACACGCACCTGCTTGCCCCTGGCGTGCCCGCCAACGAGGGG
TGCTTTGAGTCCGAGGGAGCCATGCTCGTGTGTTTGGCCAAGGCAGCCAC
CATCGCCACCCCCACCATCGCCACCCCCACCACGGCCACCGGCGTCGTTT
CGACCACCGATACCGCCAGCACTCCGGGCACCGGAACGGAGAGCGCATTG
GAGATCGCCAGGAGCCAGATGCTGTACGACAGTGGTGACATGCCGATGAC
GTCGAGGGACGTTCAGTTGCACGACGTGACCACCCCTTTCGCCGCAAGCC
CCCCCGCCGCTGTATGCCACCCCGATGCCCACGACGCGATGGAAATGTGG
GTTGGGCAGTTGGAGGCTATCCTGGGAGAGCTTGCTCTCCACGCCCAGGA
GGAAGAGCGGTCTACTGGGGCGCTGATCGCCCAGGGGTTGAGAAAGATTG
CAGCCGGGATCTACGTGTACCCAGAGGGCATCACCAGCAAAGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19994:2027..2620+

>mRNA_Ecto-sp13_S_contig19994.6503.1 ID=mRNA_Ecto-sp13_S_contig19994.6503.1|Name=mRNA_Ecto-sp13_S_contig19994.6503.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=594bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19994:2027..2620+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCTTTACGTGCTCTTTCGCGACTTCGATCTTCCTCGGACTCATGTT
TGTTGTGGCGCTTCTTCTGGTGGTCTTGCAGAGCAGTAGCTCTGAGATCC
AACTCGGCAACACGCACCTGCTTGCCCCTGGCGTGCCCGCCAACGAGGGG
TGCTTTGAGTCCGAGGGAGCCATGCTCGTGTGTTTGGCCAAGGCAGCCAC
CATCGCCACCCCCACCATCGCCACCCCCACCACGGCCACCGGCGTCGTTT
CGACCACCGATACCGCCAGCACTCCGGGCACCGGAACGGAGAGCGCATTG
GAGATCGCCAGGAGCCAGATGCTGTACGACAGTGGTGACATGCCGATGAC
GTCGAGGGACGTTCAGTTGCACGACGTGACCACCCCTTTCGCCGCAAGCC
CCCCCGCCGCTGTATGCCACCCCGATGCCCACGACGCGATGGAAATGTGG
GTTGGGCAGTTGGAGGCTATCCTGGGAGAGCTTGCTCTCCACGCCCAGGA
GGAAGAGCGGTCTACTGGGGCGCTGATCGCCCAGGGGTTGAGAAAGATTG
CAGCCGGGATCTACGTGTACCCAGAGGGCATCACCAGCAAAGTG
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