mRNA_Ecto-sp13_S_contig19990.6502.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19990.6502.1
Unique NamemRNA_Ecto-sp13_S_contig19990.6502.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19990.6502.1 vs. uniprot
Match: A0A6H5JIC3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIC3_9PHAE)

HSP 1 Score: 180 bits (457), Expect = 1.830e-50
Identity = 101/109 (92.66%), Postives = 104/109 (95.41%), Query Frame = 1 
Query:    1 EQLSRNGERASNGGTGAGKGGAVSMARSIKERLPRPRQILEALQEELELRNPGLTAQSKPIILAEVLPAVAVTSLALWTLAVYAVGIALVLTGMLPGSSTLSVPWAYED 327
            EQLSRNGERASNGG GAG+ GAVSM+RSIKER PRPRQILEALQEELEL+NPGLTAQSKPIILAEVLPAVAVTSLAL TLAVYAVGIALVLTGML GSSTLSVPWAYED
Sbjct:  564 EQLSRNGERASNGGIGAGRRGAVSMSRSIKERFPRPRQILEALQEELELQNPGLTAQSKPIILAEVLPAVAVTSLALCTLAVYAVGIALVLTGMLRGSSTLSVPWAYED 672
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BLAST of mRNA_Ecto-sp13_S_contig19990.6502.1 vs. uniprot
Match: D8LRA0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRA0_ECTSI)

HSP 1 Score: 152 bits (383), Expect = 1.770e-40
Identity = 88/105 (83.81%), Postives = 89/105 (84.76%), Query Frame = 1 
Query:    1 EQLSRNGERASNGGTGAGKGGAVSMARSIKERLPRPRQILEALQEELELRNPGLTAQSKPIILAEVLPAVAVTSLALWTLAVYAVGIALVLTGMLPGSSTLSVPW 315
            EQLSRNGE              VSMARSI ERLPRPRQILEALQEELELRNPGLTAQSKPIILAEVLPAVAVTSLALWTLAVYAVGIALVLTGMLPGSST S+PW
Sbjct:  391 EQLSRNGEXXXXXXXXXXXXXXVSMARSITERLPRPRQILEALQEELELRNPGLTAQSKPIILAEVLPAVAVTSLALWTLAVYAVGIALVLTGMLPGSSTSSIPW 495
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19990.6502.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JIC3_9PHAE1.830e-5092.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRA0_ECTSI1.770e-4083.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19990contigEcto-sp13_S_contig19990:2343..2980 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score61.2
Seed ortholog evalue3.4e-07
Seed eggNOG ortholog2880.D8LEN2
Model size329
Hectar predicted targeting categorysignal anchor
Exons2
EggNOG free text desc.phospholipase A1 activity
EggNOG OGsKOG4569@1,KOG4569@2759
Cds size327
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463005.1596897-CDS-Ecto-sp13_S_contig19990:2342..24661681463005.1596897-CDS-Ecto-sp13_S_contig19990:2342..2466Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19990 2343..2466 +
1681463005.1738775-CDS-Ecto-sp13_S_contig19990:2776..29791681463005.1738775-CDS-Ecto-sp13_S_contig19990:2776..2979Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19990 2777..2979 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19990.6502.1prot_Ecto-sp13_S_contig19990.6502.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19990 2343..2979 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19990.6502.1

>prot_Ecto-sp13_S_contig19990.6502.1 ID=prot_Ecto-sp13_S_contig19990.6502.1|Name=mRNA_Ecto-sp13_S_contig19990.6502.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=109bp
EQLSRNGERASNGGTGAGKGGAVSMARSIKERLPRPRQILEALQEELELR
NPGLTAQSKPIILAEVLPAVAVTSLALWTLAVYAVGIALVLTGMLPGSST
LSVPWAYED
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mRNA from alignment at Ecto-sp13_S_contig19990:2343..2980+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19990.6502.1 ID=mRNA_Ecto-sp13_S_contig19990.6502.1|Name=mRNA_Ecto-sp13_S_contig19990.6502.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=638bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19990:2343..2980+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGCAGCTCTCGCGGAACGGGGAGAGAGCGAGCAACGGAGGAACCGGTGC
GGGTAAGGGGGGGGCAGTGTCCATGGCTAGGAGCATCAAGGAGCGGCTTC
CGCGGCCCAGGCAGATCTTGGAGGGTGAGAGCAGAAAAGAGTACGGGCTG
TTGTAGGGTCATACGTTTAAACCACGCGGCATAAGGACCAGCTTGCTCGG
CCTTTAGTCTCGGTTGGTTTTAATTCTTCGGTGTCTGGGCGTTTGGTATC
AGGCCTTCTGGGAAAAGTGGTCGGCTTCAAGCAGCAGCACGTTGTTTGTC
CTCCGCCTACACCCGGCGCCTGATCACCTTTTTTTTTTCCCGCACCGCAT
CGCACCATGCCTCGCCCCACTCCTTTCTCCCCTGTTCGCATTGGTGCGAA
AACGCGTGTGCTGCTGCCCGCCTTTTCAACGCAGCCCTTCAAGAAGAGCT
GGAGCTTCGAAACCCCGGCCTGACCGCCCAGTCAAAGCCGATCATCCTGG
CGGAGGTCTTGCCGGCCGTGGCGGTAACCTCCCTGGCGCTGTGGACGCTT
GCCGTGTACGCCGTGGGAATCGCTCTCGTTCTCACCGGTATGCTGCCTGG
GAGTTCCACTTTGAGCGTCCCCTGGGCCTACGAAGACG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19990:2343..2980+

>mRNA_Ecto-sp13_S_contig19990.6502.1 ID=mRNA_Ecto-sp13_S_contig19990.6502.1|Name=mRNA_Ecto-sp13_S_contig19990.6502.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=327bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19990:2343..2980+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGCAGCTCTCGCGGAACGGGGAGAGAGCGAGCAACGGAGGAACCGGTGC
GGGTAAGGGGGGGGCAGTGTCCATGGCTAGGAGCATCAAGGAGCGGCTTC
CGCGGCCCAGGCAGATCTTGGAGGCCCTTCAAGAAGAGCTGGAGCTTCGA
AACCCCGGCCTGACCGCCCAGTCAAAGCCGATCATCCTGGCGGAGGTCTT
GCCGGCCGTGGCGGTAACCTCCCTGGCGCTGTGGACGCTTGCCGTGTACG
CCGTGGGAATCGCTCTCGTTCTCACCGGTATGCTGCCTGGGAGTTCCACT
TTGAGCGTCCCCTGGGCCTACGAAGAC
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