mRNA_Ecto-sp13_S_contig19990.6501.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19990.6501.1
Unique NamemRNA_Ecto-sp13_S_contig19990.6501.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19990.6501.1 vs. uniprot
Match: D8LRA0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRA0_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 6.000e-24
Identity = 58/66 (87.88%), Postives = 60/66 (90.91%), Query Frame = 1 
Query:   76 SSTGRVPGSQHTSQGSASSQTRLHLSARPEREVVGEPPDRPQGSL-VPAERGGPFDDRVGDEGEGE 270
            SS GRVPGS+HTSQGSASSQ  LHLSARPEREVV EPPDRPQGSL VPAERGGPFD RVGD+GEGE
Sbjct:  295 SSAGRVPGSEHTSQGSASSQIGLHLSARPEREVVVEPPDRPQGSLQVPAERGGPFDGRVGDDGEGE 360
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BLAST of mRNA_Ecto-sp13_S_contig19990.6501.1 vs. uniprot
Match: A0A6H5JIC3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIC3_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 3.830e-23
Identity = 69/127 (54.33%), Postives = 71/127 (55.91%), Query Frame = 1 
Query:   34 VGAEGGDRGGAAKESSTGRVPGSQHTSQG------------------------------------------------SASSQTRLHLSARPEREVVGEPPDRPQGSLVPAERGGPFDDRVGDEGEGE 270
            V AEGGD  GAA+ESSTGRV GS+HTSQG                                                S SSQTRLH SARPE EVVGEPPD PQGSLVPAERGGPFDDRVGDEGEGE
Sbjct:  407 VRAEGGDTAGAAEESSTGRVSGSEHTSQGEERIGWRCTYGSTRTVVEKFLLAVLDHLALIPAELNLPLTPLVSRLAGSTSSQTRLHRSARPESEVVGEPPDWPQGSLVPAERGGPFDDRVGDEGEGE 533
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19990.6501.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LRA0_ECTSI6.000e-2487.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JIC3_9PHAE3.830e-2354.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19990contigEcto-sp13_S_contig19990:1835..2253 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size271
Hectar predicted targeting categoryother localisation
Exons2
Cds size270
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463005.1163998-CDS-Ecto-sp13_S_contig19990:1834..19521681463005.1163998-CDS-Ecto-sp13_S_contig19990:1834..1952Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19990 1835..1952 +
1681463005.1281362-CDS-Ecto-sp13_S_contig19990:2100..22521681463005.1281362-CDS-Ecto-sp13_S_contig19990:2100..2252Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19990 2101..2252 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19990.6501.1prot_Ecto-sp13_S_contig19990.6501.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19990 1835..2252 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19990.6501.1

>prot_Ecto-sp13_S_contig19990.6501.1 ID=prot_Ecto-sp13_S_contig19990.6501.1|Name=mRNA_Ecto-sp13_S_contig19990.6501.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=90bp
AEKTSDPFGGGVGAEGGDRGGAAKESSTGRVPGSQHTSQGSASSQTRLHL
SARPEREVVGEPPDRPQGSLVPAERGGPFDDRVGDEGEGE
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mRNA from alignment at Ecto-sp13_S_contig19990:1835..2253+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19990.6501.1 ID=mRNA_Ecto-sp13_S_contig19990.6501.1|Name=mRNA_Ecto-sp13_S_contig19990.6501.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=419bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19990:1835..2253+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGAGAAAACGAGTGATCCATTTGGTGGGGGGGTGGGGGCGGAAGGGGG
GGATAGGGGGGGGGCGGCAAAGGAGAGCTCGACGGGGCGTGTGCCTGGGT
CCCAACACACGTCGCAGGGTGAGGAGAGAAGTAGGCTGACGTCATAAGTA
TAGCTCTACCGCCGACCCGTGGTTGAGAACTTGAGAAGTGGCGGTGTTGC
ATCACTTGGCTTTGATTCCAGCAGAGCTATACCTTGCTTTATCTCCTCTT
GTCTCTCGCCTGGCAGGTTCAGCCTCATCTCAGACCCGGCTTCACCTCAG
CGCACGCCCCGAAAGAGAAGTGGTGGGCGAGCCACCAGACCGGCCCCAGG
GGTCACTCGTGCCAGCGGAACGGGGTGGCCCTTTTGATGATCGAGTCGGG
GACGAAGGCGAGGGAGAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19990:1835..2253+

>mRNA_Ecto-sp13_S_contig19990.6501.1 ID=mRNA_Ecto-sp13_S_contig19990.6501.1|Name=mRNA_Ecto-sp13_S_contig19990.6501.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=270bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19990:1835..2253+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGAGAAAACGAGTGATCCATTTGGTGGGGGGGTGGGGGCGGAAGGGGG
GGATAGGGGGGGGGCGGCAAAGGAGAGCTCGACGGGGCGTGTGCCTGGGT
CCCAACACACGTCGCAGGGTTCAGCCTCATCTCAGACCCGGCTTCACCTC
AGCGCACGCCCCGAAAGAGAAGTGGTGGGCGAGCCACCAGACCGGCCCCA
GGGGTCACTCGTGCCAGCGGAACGGGGTGGCCCTTTTGATGATCGAGTCG
GGGACGAAGGCGAGGGAGAG
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