mRNA_Ecto-sp13_S_contig19990.6500.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19990.6500.1
Unique NamemRNA_Ecto-sp13_S_contig19990.6500.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19990.6500.1 vs. uniprot
Match: A0A6H5JIC3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIC3_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 3.050e-34
Identity = 71/81 (87.65%), Postives = 74/81 (91.36%), Query Frame = 1 
Query:    1 EDDYDNADDDRFGDSRDVECLEPVVESVTGPSDHKAGDSGEDEQLVETPRPDAIGIYVPRAEEVPVGPSASAASRADEPMA 243
            ED+ D+ADDDRFGDSRDVE LEPVVESVTGPSDHKAGDS EDEQL+ETPRPDA GIYVPRAEEVP GPSASAASR DEP A
Sbjct:   10 EDNDDDADDDRFGDSRDVERLEPVVESVTGPSDHKAGDSCEDEQLLETPRPDAFGIYVPRAEEVPSGPSASAASRVDEPTA 90
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BLAST of mRNA_Ecto-sp13_S_contig19990.6500.1 vs. uniprot
Match: D8LRA0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRA0_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 9.280e-23
Identity = 56/73 (76.71%), Postives = 62/73 (84.93%), Query Frame = 1 
Query:   28 DRFGDSRDVECLEPVVESVTGPSDHKAGDSGEDEQLVETPRPDAIGIYVPRAEEV-PVGPSASAASRADEPMA 243
            DRFGDSRDV+ LEPV++SVTGP DHKAGDS EDEQ +ETPRPDAIG  VP AE+V P GP+ASAAS ADEP A
Sbjct:   14 DRFGDSRDVDRLEPVMKSVTGPGDHKAGDSCEDEQPLETPRPDAIGRNVPGAEKVLPGGPAASAASGADEPTA 86
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19990.6500.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JIC3_9PHAE3.050e-3487.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRA0_ECTSI9.280e-2376.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19990contigEcto-sp13_S_contig19990:671..915 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size245
Hectar predicted targeting categoryother localisation
Exons1
Cds size243
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463005.0846188-CDS-Ecto-sp13_S_contig19990:670..9131681463005.0846188-CDS-Ecto-sp13_S_contig19990:670..913Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19990 671..913 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19990.6500.1prot_Ecto-sp13_S_contig19990.6500.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19990 671..913 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19990.6500.1

>prot_Ecto-sp13_S_contig19990.6500.1 ID=prot_Ecto-sp13_S_contig19990.6500.1|Name=mRNA_Ecto-sp13_S_contig19990.6500.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=81bp
EDDYDNADDDRFGDSRDVECLEPVVESVTGPSDHKAGDSGEDEQLVETPR
PDAIGIYVPRAEEVPVGPSASAASRADEPMA
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mRNA from alignment at Ecto-sp13_S_contig19990:671..915+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19990.6500.1 ID=mRNA_Ecto-sp13_S_contig19990.6500.1|Name=mRNA_Ecto-sp13_S_contig19990.6500.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=245bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19990:671..915+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAAGATGACTACGATAACGCGGACGACGATCGTTTCGGAGACTCGCGCGA
CGTGGAGTGCCTGGAACCCGTGGTGGAATCTGTGACCGGGCCGAGCGACC
ACAAGGCTGGTGATAGTGGCGAGGACGAGCAGCTCGTCGAGACTCCGAGG
CCGGACGCGATTGGTATATATGTCCCGAGAGCGGAGGAAGTTCCGGTCGG
ACCGTCGGCGAGCGCCGCGTCGAGAGCCGATGAGCCGATGGCGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19990:671..915+

>mRNA_Ecto-sp13_S_contig19990.6500.1 ID=mRNA_Ecto-sp13_S_contig19990.6500.1|Name=mRNA_Ecto-sp13_S_contig19990.6500.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=243bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19990:671..915+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAAGATGACTACGATAACGCGGACGACGATCGTTTCGGAGACTCGCGCGA
CGTGGAGTGCCTGGAACCCGTGGTGGAATCTGTGACCGGGCCGAGCGACC
ACAAGGCTGGTGATAGTGGCGAGGACGAGCAGCTCGTCGAGACTCCGAGG
CCGGACGCGATTGGTATATATGTCCCGAGAGCGGAGGAAGTTCCGGTCGG
ACCGTCGGCGAGCGCCGCGTCGAGAGCCGATGAGCCGATGGCG
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