mRNA_Ecto-sp13_S_contig1997.6490.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1997.6490.1
Unique NamemRNA_Ecto-sp13_S_contig1997.6490.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1997.6490.1 vs. uniprot
Match: A0A6H5JRC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRC1_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 5.480e-24
Identity = 50/105 (47.62%), Postives = 67/105 (63.81%), Query Frame = 2
Query:    5 FGFSLMDSFCFENWAQTHEFGHNLGCDHDRGNPATTVTAYGHGLRYCTGTPQYRTVMTYPDDCSGAE----------LINYFSNPDVEYLGQPTGTATENNAQTV 289
            FGFSL+DS CF+N++ THE  HN+GC HD+ N + T  AY HG RYC G   YRT+M+Y  +  G +           +NYFSNP+V YL + TGTA  +NA+ +
Sbjct:  290 FGFSLVDSNCFDNFSHTHEIAHNMGCYHDKNN-SDTQHAYRHGWRYCEGADPYRTIMSYYHNGCGGDPTSEDDPIVPRVNYFSNPNVTYLNKSTGTAAADNARCI 393          
BLAST of mRNA_Ecto-sp13_S_contig1997.6490.1 vs. uniprot
Match: D8LLU0_ECTSI (PKD domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLU0_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 4.210e-21
Identity = 40/51 (78.43%), Postives = 41/51 (80.39%), Query Frame = 2
Query:    8 GFSLMDSFCFENWAQTHEFGHNLGCDHDRGNPATTVTAYGHGLRYCTGTPQ 160
            GFSLMDS CF NW QTHE GHNLGC HDR N  T +TAYGHGLRYCTG PQ
Sbjct:  337 GFSLMDSICFSNWTQTHEIGHNLGCRHDRDNSNTGMTAYGHGLRYCTGIPQ 387          
BLAST of mRNA_Ecto-sp13_S_contig1997.6490.1 vs. uniprot
Match: A0A2E9XQS0_9RICK (PPC domain-containing protein n=3 Tax=Proteobacteria TaxID=1224 RepID=A0A2E9XQS0_9RICK)

HSP 1 Score: 80.1 bits (196), Expect = 1.750e-15
Identity = 40/96 (41.67%), Postives = 49/96 (51.04%), Query Frame = 2
Query:    8 GFSLMDSFCFENWAQTHEFGHNLGCDHDRGN----PATTVTAYGHGLRYCTGTPQYRTVMTYPDDCSGAELINYFSNPDVEYLGQPTGTATENNAQ 283
            GF +    C   W   HEFGHN+G  HD  N    P      YGH L     +  Y T+M Y   C+   +IN FSNPD+ + G PTGTA  NNA+
Sbjct:  308 GFQVTRRNCMGGWTVAHEFGHNMGLQHDEANAGGRPGPYQYNYGHIL-----SNNYHTIMAYGSSCNWCPVINNFSNPDISHRGVPTGTAYHNNAR 398          
BLAST of mRNA_Ecto-sp13_S_contig1997.6490.1 vs. uniprot
Match: UPI0014244204 (M12 family metallo-peptidase n=1 Tax=Rheinheimera pleomorphica TaxID=2703963 RepID=UPI0014244204)

HSP 1 Score: 79.7 bits (195), Expect = 2.340e-15
Identity = 42/96 (43.75%), Postives = 49/96 (51.04%), Query Frame = 2
Query:    8 GFSLMDSFCFENWAQTHEFGHNLGCDHDRGN----PATTVTAYGHGLRYCTGTPQYRTVMTYPDDCSGAELINYFSNPDVEYLGQPTGTATENNAQ 283
            GF +    C   W   HEFGHN+G  HDR N    P  T   YGH L   T      T+M Y   C+    IN+FSNPDV Y G  TG+A  NNA+
Sbjct:  312 GFQITRRSCVGGWTIAHEFGHNMGLQHDRANAGGTPGPTQYNYGHILANNT-----HTIMAYGSSCNWCPAINHFSNPDVYYNGYATGSAYHNNAR 402          
BLAST of mRNA_Ecto-sp13_S_contig1997.6490.1 vs. uniprot
Match: A0A2G2A1R6_9BACT (Ig-like domain-containing protein n=1 Tax=Phycisphaera sp. TaxID=2030824 RepID=A0A2G2A1R6_9BACT)

HSP 1 Score: 74.7 bits (182), Expect = 1.380e-13
Identity = 41/96 (42.71%), Postives = 55/96 (57.29%), Query Frame = 2
Query:    5 FGFSLMDSFC-FENWAQTHEFGHNLGCDHDRGNPATTVTAYGHGLRY-CTGTPQYRTVMTYPDDCSGAELINYFSNPDVEYLGQPTGTA-TENNAQ 283
            FGF++ D+ C   N    HE GHN+G  HDR N    V +Y +G R+  T    YR+VM Y    S    + YFSNPD+ Y+G PTG   +E+NA+
Sbjct:  328 FGFTVTDTGCAVGNLTFAHEIGHNMGATHDRNNAGGAVFSYAYGWRWNSTNGVLYRSVMAY----SPGSRVPYFSNPDINYIGTPTGVVNSEDNAR 419          
BLAST of mRNA_Ecto-sp13_S_contig1997.6490.1 vs. uniprot
Match: A0A1Q8QFJ7_9DELT (Uncharacterized protein n=1 Tax=Desulfovibrio sp. DV TaxID=1844708 RepID=A0A1Q8QFJ7_9DELT)

HSP 1 Score: 71.2 bits (173), Expect = 2.150e-12
Identity = 36/86 (41.86%), Postives = 52/86 (60.47%), Query Frame = 2
Query:   11 FSLMDSFCFENWAQ-THEFGHNLGCDHDRGNPATTVT-AYGHGLRYCTGTPQYRTVMTYPDDCS-GAELINYFSNPDVEYLGQPTG 259
            F+++D  C   +    HE GHN G  HDRG+ + ++  +Y +G +    +P +RT+M Y  DCS G   +NY+SNPDV Y G PTG
Sbjct:  317 FNVVDYSCATGYYSFAHECGHNQGAHHDRGSASGSILYSYAYGYQQTAASPAFRTIMAY--DCSAGCTRVNYWSNPDVNYNGFPTG 400          
BLAST of mRNA_Ecto-sp13_S_contig1997.6490.1 vs. uniprot
Match: A0A7X0NIV5_9GAMM (PPC domain-containing protein n=1 Tax=Thalassotalea piscium TaxID=1230533 RepID=A0A7X0NIV5_9GAMM)

HSP 1 Score: 71.2 bits (173), Expect = 2.260e-12
Identity = 39/96 (40.62%), Postives = 47/96 (48.96%), Query Frame = 2
Query:    8 GFSLMDSFCFENWAQTHEFGHNLGCDHDR----GNPATTVTAYGHGLRYCTGTPQYRTVMTYPDDCSGAELINYFSNPDVEYLGQPTGTATENNAQ 283
            GF +    C   W  +HEFGHN+G  HD     G P      YGH L   T      T+M Y   C+    IN FSNP+V Y G  TG+A  NNA+
Sbjct:  318 GFQVTRRNCVGGWTISHEFGHNMGLQHDERNAGGTPGPYQYNYGHLLANNT-----HTIMAYGSSCNWCPAINNFSNPNVYYNGYATGSAYHNNAR 408          
BLAST of mRNA_Ecto-sp13_S_contig1997.6490.1 vs. uniprot
Match: A0A7V5BS54_9CHLR (Uncharacterized protein n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7V5BS54_9CHLR)

HSP 1 Score: 70.5 bits (171), Expect = 4.340e-12
Identity = 44/93 (47.31%), Postives = 55/93 (59.14%), Query Frame = 2
Query:    5 FGFSLMDSFCFENWAQT---HEFGHNLGCDHD-RGNPATTVTAYGHGLRYCTGTPQYRTVMTYPDDCS--GAE--LINYFSNPDVEYLGQPTG 259
            +GF+ M+S C + W QT   HEFGHN+G  HD   + ATT   Y HG  Y      + T+M Y  +CS  GA   LI  FSNPD+E+ GQPTG
Sbjct:  315 YGFATMES-CLD-WGQTIVAHEFGHNMGARHDWYVDDATTPFPYAHG--YVPADYAFHTIMAYSSECSDQGASCPLIPNFSNPDIEFDGQPTG 403          
BLAST of mRNA_Ecto-sp13_S_contig1997.6490.1 vs. uniprot
Match: UPI0016641082 (M12 family metallo-peptidase n=1 Tax=Marinicella pacifica TaxID=1171543 RepID=UPI0016641082)

HSP 1 Score: 69.7 bits (169), Expect = 7.140e-12
Identity = 42/91 (46.15%), Postives = 56/91 (61.54%), Query Frame = 2
Query:   41 NWAQTHEFGHNLGCDHDRGNPATTVT------AYGHGLRYCTGTPQYRTVMTYPDDCSGA-ELINYFSNPDVEYLGQPTGTATE-NNAQTV 289
            N +  HEFGHN+G +H+  N + T T      ++GH   Y +G  QYRTVM+Y + C+G      YFSNPDV YLG PTG   E +NA+T+
Sbjct:  293 NLSFAHEFGHNMGLEHNPENSSATSTTASYAWSFGH---YHSG--QYRTVMSYSNPCTGGCTRRQYFSNPDVNYLGLPTGIDGERDNARTL 378          
BLAST of mRNA_Ecto-sp13_S_contig1997.6490.1 vs. uniprot
Match: UPI001EECD436 (zinc-dependent metalloprotease n=1 Tax=Emticicia aquatica TaxID=1681835 RepID=UPI001EECD436)

HSP 1 Score: 68.9 bits (167), Expect = 1.450e-11
Identity = 40/95 (42.11%), Postives = 50/95 (52.63%), Query Frame = 2
Query:    5 FGFSLMDSFC-FENWAQTHEFGHNLGCDHDRGNPATTVTAYGHGLRYCTGTPQYRTVMTYPDDCSG----AELINYFSNPDVEYLGQPTGTATEN 274
            F FS+ D  C  +N    HE GHN G  HD    +    AYG+G  Y     ++RTVM Y + C+      + I YFSNP+V YLG PTGT   N
Sbjct:  280 FAFSVDDLSCAVDNLTFPHEIGHNFGSYHDPYVTSGNPLAYGYG--YINLANRWRTVMAYNNQCADNGYFCDRIPYFSNPNVNYLGNPTGTIANN 372          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1997.6490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JRC1_9PHAE5.480e-2447.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLU0_ECTSI4.210e-2178.43PKD domain protein n=1 Tax=Ectocarpus siliculosus ... [more]
A0A2E9XQS0_9RICK1.750e-1541.67PPC domain-containing protein n=3 Tax=Proteobacter... [more]
UPI00142442042.340e-1543.75M12 family metallo-peptidase n=1 Tax=Rheinheimera ... [more]
A0A2G2A1R6_9BACT1.380e-1342.71Ig-like domain-containing protein n=1 Tax=Phycisph... [more]
A0A1Q8QFJ7_9DELT2.150e-1241.86Uncharacterized protein n=1 Tax=Desulfovibrio sp. ... [more]
A0A7X0NIV5_9GAMM2.260e-1240.63PPC domain-containing protein n=1 Tax=Thalassotale... [more]
A0A7V5BS54_9CHLR4.340e-1247.31Uncharacterized protein n=1 Tax=Anaerolineae bacte... [more]
UPI00166410827.140e-1246.15M12 family metallo-peptidase n=1 Tax=Marinicella p... [more]
UPI001EECD4361.450e-1142.11zinc-dependent metalloprotease n=1 Tax=Emticicia a... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1997contigEcto-sp13_S_contig1997:9610..10761 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score72.4
Seed ortholog evalue1.2e-10
Seed eggNOG ortholog2880.D8LC56
Model size289
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Metallo-peptidase family M12B Reprolysin-like
EggNOG OGs2E79G@1,2SDWE@2759
Cds size270
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463004.4521012-CDS-Ecto-sp13_S_contig1997:9609..97391681463004.4521012-CDS-Ecto-sp13_S_contig1997:9609..9739Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1997 9610..9739 -
1681463004.461631-CDS-Ecto-sp13_S_contig1997:10602..107421681463004.461631-CDS-Ecto-sp13_S_contig1997:10602..10742Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1997 10603..10742 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463004.4698834-UTR-Ecto-sp13_S_contig1997:10742..107611681463004.4698834-UTR-Ecto-sp13_S_contig1997:10742..10761Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1997 10743..10761 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1997.6490.1prot_Ecto-sp13_S_contig1997.6490.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1997 9610..10742 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1997.6490.1

>prot_Ecto-sp13_S_contig1997.6490.1 ID=prot_Ecto-sp13_S_contig1997.6490.1|Name=mRNA_Ecto-sp13_S_contig1997.6490.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=90bp
MDSFCFENWAQTHEFGHNLGCDHDRGNPATTVTAYGHGLRYCTGTPQYRT
VMTYPDDCSGAELINYFSNPDVEYLGQPTGTATENNAQTV
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mRNA from alignment at Ecto-sp13_S_contig1997:9610..10761-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1997.6490.1 ID=mRNA_Ecto-sp13_S_contig1997.6490.1|Name=mRNA_Ecto-sp13_S_contig1997.6490.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1152bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1997:9610..10761- (Ectocarpus species13 EcNAP12_S_4_19m)
TCGTTTCGGCTTCTCCCTAATGGATTCATTCTGCTTCGAGAACTGGGCAC AAACGCACGAGTTTGGGCACAACCTGGGGTGCGACCACGACCGGGGTAAC CCCGCCACCACAGTGACTGCGTATGGCCATGGTCTGCGTTACTGCACGGG CACCCCTCAGTGAGTGGTGGAGTTAGCAATCAGGCGAATATGTCGTGCGT GAAAGAGGGACCAAGGGGAATATTGCGTACACGCAAACGAAGGGCAGGGC ATCAATTAAAACTAGCAGCCATGAGGCGACGCGGCTCGAATATAACAGCA GTGCAAGCTCTCAACCGTCGAGTGTCGCATCCAACCGTACATACTTAGTT CTGATATCGTGCTGGGGCCACTACCAATTTGTGTAATTTGTGGAGGTGAC CTCTAACACGGATCCCTTCCCCTCAACGATTGTCGAGGACGATTCCCTCT CTATACAACCATACCAATTCATTGTAACCATGCAAGATATGTTTTCATGT GAAGAAATTCAACTGAAAACTCGGGTGGATCGATCGATACCACCACCCTC GGGAATGGCCCGGGTTTCTTGAGACGGTGTCAGGCTTTGGGATTATTTTG TACTTTCTTCCTTTCATGAAATTTGCCAGTTCTTGGTCCTCTCCTAGTAC GCGCAGACACTTCTTCTTCGCTCTCGCCAGTCATAAACCCGGTGCTCATT CGTTTCAACGCAACACGAAGAAAGATCGATTCCGCTTTCGCTCAGCAGTA ACTGCTCGGAGAAACAAGTAACCTAACGGATTTATTTAGTGGGCGGTGGG TCCGTGGAACCTGTACATTCTTAGCGATCGGACTGATGCCAAAAGAGGAC CGATGGCCCTGAAGCTTTGTTGAGGGTTAGCAGGAACTCTTGCTGGTGAT ACCAAAGCTGCATCCAGTTTCGTTTGAAATGAGGACTTCGGTGTGTGCTT ACCCGCGCACCAGCGCACCCACATCATGATATCTCAGCACGTTGTTGCGA ATCGAAATTGTGCGTCGTCCAGGTATCGCACCGTAATGACCTACCCGGAT GATTGCTCCGGCGCCGAGTTGATAAACTACTTCTCAAACCCGGACGTCGA GTACTTGGGCCAACCTACGGGAACCGCCACTGAGAATAACGCACAGACGG TC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1997:9610..10761-

>mRNA_Ecto-sp13_S_contig1997.6490.1 ID=mRNA_Ecto-sp13_S_contig1997.6490.1|Name=mRNA_Ecto-sp13_S_contig1997.6490.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=270bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1997:9610..10761- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATTCATTCTGCTTCGAGAACTGGGCACAAACGCACGAGTTTGGGCA
CAACCTGGGGTGCGACCACGACCGGGGTAACCCCGCCACCACAGTGACTG
CGTATGGCCATGGTCTGCGTTACTGCACGGGCACCCCTCAGTATCGCACC
GTAATGACCTACCCGGATGATTGCTCCGGCGCCGAGTTGATAAACTACTT
CTCAAACCCGGACGTCGAGTACTTGGGCCAACCTACGGGAACCGCCACTG
AGAATAACGCACAGACGGTC
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