mRNA_Ecto-sp13_S_contig1997.6490.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1997.6490.1 vs. uniprot
Match: A0A6H5JRC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRC1_9PHAE) HSP 1 Score: 104 bits (259), Expect = 5.480e-24 Identity = 50/105 (47.62%), Postives = 67/105 (63.81%), Query Frame = 2
Query: 5 FGFSLMDSFCFENWAQTHEFGHNLGCDHDRGNPATTVTAYGHGLRYCTGTPQYRTVMTYPDDCSGAE----------LINYFSNPDVEYLGQPTGTATENNAQTV 289
FGFSL+DS CF+N++ THE HN+GC HD+ N + T AY HG RYC G YRT+M+Y + G + +NYFSNP+V YL + TGTA +NA+ +
Sbjct: 290 FGFSLVDSNCFDNFSHTHEIAHNMGCYHDKNN-SDTQHAYRHGWRYCEGADPYRTIMSYYHNGCGGDPTSEDDPIVPRVNYFSNPNVTYLNKSTGTAAADNARCI 393
BLAST of mRNA_Ecto-sp13_S_contig1997.6490.1 vs. uniprot
Match: D8LLU0_ECTSI (PKD domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLU0_ECTSI) HSP 1 Score: 95.1 bits (235), Expect = 4.210e-21 Identity = 40/51 (78.43%), Postives = 41/51 (80.39%), Query Frame = 2
Query: 8 GFSLMDSFCFENWAQTHEFGHNLGCDHDRGNPATTVTAYGHGLRYCTGTPQ 160
GFSLMDS CF NW QTHE GHNLGC HDR N T +TAYGHGLRYCTG PQ
Sbjct: 337 GFSLMDSICFSNWTQTHEIGHNLGCRHDRDNSNTGMTAYGHGLRYCTGIPQ 387
BLAST of mRNA_Ecto-sp13_S_contig1997.6490.1 vs. uniprot
Match: A0A2E9XQS0_9RICK (PPC domain-containing protein n=3 Tax=Proteobacteria TaxID=1224 RepID=A0A2E9XQS0_9RICK) HSP 1 Score: 80.1 bits (196), Expect = 1.750e-15 Identity = 40/96 (41.67%), Postives = 49/96 (51.04%), Query Frame = 2
Query: 8 GFSLMDSFCFENWAQTHEFGHNLGCDHDRGN----PATTVTAYGHGLRYCTGTPQYRTVMTYPDDCSGAELINYFSNPDVEYLGQPTGTATENNAQ 283
GF + C W HEFGHN+G HD N P YGH L + Y T+M Y C+ +IN FSNPD+ + G PTGTA NNA+
Sbjct: 308 GFQVTRRNCMGGWTVAHEFGHNMGLQHDEANAGGRPGPYQYNYGHIL-----SNNYHTIMAYGSSCNWCPVINNFSNPDISHRGVPTGTAYHNNAR 398
BLAST of mRNA_Ecto-sp13_S_contig1997.6490.1 vs. uniprot
Match: UPI0014244204 (M12 family metallo-peptidase n=1 Tax=Rheinheimera pleomorphica TaxID=2703963 RepID=UPI0014244204) HSP 1 Score: 79.7 bits (195), Expect = 2.340e-15 Identity = 42/96 (43.75%), Postives = 49/96 (51.04%), Query Frame = 2
Query: 8 GFSLMDSFCFENWAQTHEFGHNLGCDHDRGN----PATTVTAYGHGLRYCTGTPQYRTVMTYPDDCSGAELINYFSNPDVEYLGQPTGTATENNAQ 283
GF + C W HEFGHN+G HDR N P T YGH L T T+M Y C+ IN+FSNPDV Y G TG+A NNA+
Sbjct: 312 GFQITRRSCVGGWTIAHEFGHNMGLQHDRANAGGTPGPTQYNYGHILANNT-----HTIMAYGSSCNWCPAINHFSNPDVYYNGYATGSAYHNNAR 402
BLAST of mRNA_Ecto-sp13_S_contig1997.6490.1 vs. uniprot
Match: A0A2G2A1R6_9BACT (Ig-like domain-containing protein n=1 Tax=Phycisphaera sp. TaxID=2030824 RepID=A0A2G2A1R6_9BACT) HSP 1 Score: 74.7 bits (182), Expect = 1.380e-13 Identity = 41/96 (42.71%), Postives = 55/96 (57.29%), Query Frame = 2
Query: 5 FGFSLMDSFC-FENWAQTHEFGHNLGCDHDRGNPATTVTAYGHGLRY-CTGTPQYRTVMTYPDDCSGAELINYFSNPDVEYLGQPTGTA-TENNAQ 283
FGF++ D+ C N HE GHN+G HDR N V +Y +G R+ T YR+VM Y S + YFSNPD+ Y+G PTG +E+NA+
Sbjct: 328 FGFTVTDTGCAVGNLTFAHEIGHNMGATHDRNNAGGAVFSYAYGWRWNSTNGVLYRSVMAY----SPGSRVPYFSNPDINYIGTPTGVVNSEDNAR 419
BLAST of mRNA_Ecto-sp13_S_contig1997.6490.1 vs. uniprot
Match: A0A1Q8QFJ7_9DELT (Uncharacterized protein n=1 Tax=Desulfovibrio sp. DV TaxID=1844708 RepID=A0A1Q8QFJ7_9DELT) HSP 1 Score: 71.2 bits (173), Expect = 2.150e-12 Identity = 36/86 (41.86%), Postives = 52/86 (60.47%), Query Frame = 2
Query: 11 FSLMDSFCFENWAQ-THEFGHNLGCDHDRGNPATTVT-AYGHGLRYCTGTPQYRTVMTYPDDCS-GAELINYFSNPDVEYLGQPTG 259
F+++D C + HE GHN G HDRG+ + ++ +Y +G + +P +RT+M Y DCS G +NY+SNPDV Y G PTG
Sbjct: 317 FNVVDYSCATGYYSFAHECGHNQGAHHDRGSASGSILYSYAYGYQQTAASPAFRTIMAY--DCSAGCTRVNYWSNPDVNYNGFPTG 400
BLAST of mRNA_Ecto-sp13_S_contig1997.6490.1 vs. uniprot
Match: A0A7X0NIV5_9GAMM (PPC domain-containing protein n=1 Tax=Thalassotalea piscium TaxID=1230533 RepID=A0A7X0NIV5_9GAMM) HSP 1 Score: 71.2 bits (173), Expect = 2.260e-12 Identity = 39/96 (40.62%), Postives = 47/96 (48.96%), Query Frame = 2
Query: 8 GFSLMDSFCFENWAQTHEFGHNLGCDHDR----GNPATTVTAYGHGLRYCTGTPQYRTVMTYPDDCSGAELINYFSNPDVEYLGQPTGTATENNAQ 283
GF + C W +HEFGHN+G HD G P YGH L T T+M Y C+ IN FSNP+V Y G TG+A NNA+
Sbjct: 318 GFQVTRRNCVGGWTISHEFGHNMGLQHDERNAGGTPGPYQYNYGHLLANNT-----HTIMAYGSSCNWCPAINNFSNPNVYYNGYATGSAYHNNAR 408
BLAST of mRNA_Ecto-sp13_S_contig1997.6490.1 vs. uniprot
Match: A0A7V5BS54_9CHLR (Uncharacterized protein n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7V5BS54_9CHLR) HSP 1 Score: 70.5 bits (171), Expect = 4.340e-12 Identity = 44/93 (47.31%), Postives = 55/93 (59.14%), Query Frame = 2
Query: 5 FGFSLMDSFCFENWAQT---HEFGHNLGCDHD-RGNPATTVTAYGHGLRYCTGTPQYRTVMTYPDDCS--GAE--LINYFSNPDVEYLGQPTG 259
+GF+ M+S C + W QT HEFGHN+G HD + ATT Y HG Y + T+M Y +CS GA LI FSNPD+E+ GQPTG
Sbjct: 315 YGFATMES-CLD-WGQTIVAHEFGHNMGARHDWYVDDATTPFPYAHG--YVPADYAFHTIMAYSSECSDQGASCPLIPNFSNPDIEFDGQPTG 403
BLAST of mRNA_Ecto-sp13_S_contig1997.6490.1 vs. uniprot
Match: UPI0016641082 (M12 family metallo-peptidase n=1 Tax=Marinicella pacifica TaxID=1171543 RepID=UPI0016641082) HSP 1 Score: 69.7 bits (169), Expect = 7.140e-12 Identity = 42/91 (46.15%), Postives = 56/91 (61.54%), Query Frame = 2
Query: 41 NWAQTHEFGHNLGCDHDRGNPATTVT------AYGHGLRYCTGTPQYRTVMTYPDDCSGA-ELINYFSNPDVEYLGQPTGTATE-NNAQTV 289
N + HEFGHN+G +H+ N + T T ++GH Y +G QYRTVM+Y + C+G YFSNPDV YLG PTG E +NA+T+
Sbjct: 293 NLSFAHEFGHNMGLEHNPENSSATSTTASYAWSFGH---YHSG--QYRTVMSYSNPCTGGCTRRQYFSNPDVNYLGLPTGIDGERDNARTL 378
BLAST of mRNA_Ecto-sp13_S_contig1997.6490.1 vs. uniprot
Match: UPI001EECD436 (zinc-dependent metalloprotease n=1 Tax=Emticicia aquatica TaxID=1681835 RepID=UPI001EECD436) HSP 1 Score: 68.9 bits (167), Expect = 1.450e-11 Identity = 40/95 (42.11%), Postives = 50/95 (52.63%), Query Frame = 2
Query: 5 FGFSLMDSFC-FENWAQTHEFGHNLGCDHDRGNPATTVTAYGHGLRYCTGTPQYRTVMTYPDDCSG----AELINYFSNPDVEYLGQPTGTATEN 274
F FS+ D C +N HE GHN G HD + AYG+G Y ++RTVM Y + C+ + I YFSNP+V YLG PTGT N
Sbjct: 280 FAFSVDDLSCAVDNLTFPHEIGHNFGSYHDPYVTSGNPLAYGYG--YINLANRWRTVMAYNNQCADNGYFCDRIPYFSNPNVNYLGNPTGTIANN 372 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1997.6490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1997.6490.1 >prot_Ecto-sp13_S_contig1997.6490.1 ID=prot_Ecto-sp13_S_contig1997.6490.1|Name=mRNA_Ecto-sp13_S_contig1997.6490.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=90bp MDSFCFENWAQTHEFGHNLGCDHDRGNPATTVTAYGHGLRYCTGTPQYRTback to top mRNA from alignment at Ecto-sp13_S_contig1997:9610..10761- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1997.6490.1 ID=mRNA_Ecto-sp13_S_contig1997.6490.1|Name=mRNA_Ecto-sp13_S_contig1997.6490.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1152bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1997:9610..10761- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1997:9610..10761- >mRNA_Ecto-sp13_S_contig1997.6490.1 ID=mRNA_Ecto-sp13_S_contig1997.6490.1|Name=mRNA_Ecto-sp13_S_contig1997.6490.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=270bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1997:9610..10761- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |