mRNA_Ecto-sp13_S_contig19958.6488.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19958.6488.1
Unique NamemRNA_Ecto-sp13_S_contig19958.6488.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19958.6488.1 vs. uniprot
Match: D8LSJ6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSJ6_ECTSI)

HSP 1 Score: 483 bits (1242), Expect = 1.200e-158
Identity = 318/343 (92.71%), Postives = 325/343 (94.75%), Query Frame = 1 
Query:   13 QVLEGMVERRDSPDGETWLLLLNAVDTAGALDKAVELMERSRAEGHGSEINELTYSALLGACGRAKKLARAFRIVQSMRDTGVKPTEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKAISEENTLRTRALQRTRMLETRRSPPSSSAVRGPAEDSSVAVAATAPGAPAQSSPLPSTAPGTTGGGASSAPRDGVDGRGKSLDVRVNAAGKTKVVAGGGKGTAATATRAHSKGERSVIAAWSSSSSGRGTAGPVTKAGGVEGYASIGRSEASLGGPTADPTKSSRAPSSTSSDTANPALDNLFRVFLVFQEMRSRGVRPDLRAYNALVNTCA 1041
            +VLEGMVERRDSPDGETWLLLLNAVDTAGALDKAVELMERSRAEGHGSEINELTYSALLGACGRAKKLARAFRIVQSMR+TGVKPTEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKAISEENTLRTRALQRTRMLETRRSPPSSSAVR PAE SSVA AA+APGAPAQSSPLPSTAPGTT GGAS+ PRDGVD RGKSLDVR +A G TKVVAGGGKG AA ATRAH+K E SVIAAWSSSSSGRGTAGP TKAGGV GYAS GRSEASL GPTADPT+SSRAPSSTSSD ANPALDNLFRVFLVFQEMRSRGVRPDLRAYNALVNTCA
Sbjct:  563 KVLEGMVERRDSPDGETWLLLLNAVDTAGALDKAVELMERSRAEGHGSEINELTYSALLGACGRAKKLARAFRIVQSMRETGVKPTEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKAISEENTLRTRALQRTRMLETRRSPPSSSAVRRPAEGSSVAAAASAPGAPAQSSPLPSTAPGTTSGGASTLPRDGVDDRGKSLDVRADAVGTTKVVAGGGKGPAAAATRAHAKEEPSVIAAWSSSSSGRGTAGPATKAGGVGGYASSGRSEASLRGPTADPTESSRAPSSTSSDNANPALDNLFRVFLVFQEMRSRGVRPDLRAYNALVNTCA 905
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BLAST of mRNA_Ecto-sp13_S_contig19958.6488.1 vs. uniprot
Match: A0A836CEM1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEM1_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.420e-6
Identity = 27/38 (71.05%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:  928 ANPALDNLFRVFLVFQEMRSRGVRPDLRAYNALVNTCA 1041
            ++PA DNLFRVFLVF EM+S+GV+PD  AYNAL+N+CA
Sbjct:  653 SDPAADNLFRVFLVFGEMKSQGVQPDRPAYNALINSCA 690
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19958.6488.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSJ6_ECTSI1.200e-15892.71Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CEM1_9STRA1.420e-671.05Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19958contigEcto-sp13_S_contig19958:511..3046 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score489.2
Seed ortholog evalue1.6e-135
Seed eggNOG ortholog2880.D8LSJ6
Model size1041
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004519,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0097159,GO:1901360,GO:1901363
Exons4
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
Ec32 ortholog descriptionPentatricopeptide repeat
Ec32 orthologEc-09_001880.1
Cds size1041
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463004.3609831-CDS-Ecto-sp13_S_contig19958:510..11491681463004.3609831-CDS-Ecto-sp13_S_contig19958:510..1149Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19958 511..1149 -
1681463004.3710077-CDS-Ecto-sp13_S_contig19958:1688..18341681463004.3710077-CDS-Ecto-sp13_S_contig19958:1688..1834Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19958 1689..1834 -
1681463004.383955-CDS-Ecto-sp13_S_contig19958:2381..24781681463004.383955-CDS-Ecto-sp13_S_contig19958:2381..2478Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19958 2382..2478 -
1681463004.3920484-CDS-Ecto-sp13_S_contig19958:2887..30461681463004.3920484-CDS-Ecto-sp13_S_contig19958:2887..3046Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19958 2888..3046 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19958.6488.1prot_Ecto-sp13_S_contig19958.6488.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19958 511..3046 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19958.6488.1

>prot_Ecto-sp13_S_contig19958.6488.1 ID=prot_Ecto-sp13_S_contig19958.6488.1|Name=mRNA_Ecto-sp13_S_contig19958.6488.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=347bp
MNPVQVLEGMVERRDSPDGETWLLLLNAVDTAGALDKAVELMERSRAEGH
GSEINELTYSALLGACGRAKKLARAFRIVQSMRDTGVKPTEGTYLALMEV
CRHSRDSKAAVEVFEAMETEGVRPGVRSYTSLLKAISEENTLRTRALQRT
RMLETRRSPPSSSAVRGPAEDSSVAVAATAPGAPAQSSPLPSTAPGTTGG
GASSAPRDGVDGRGKSLDVRVNAAGKTKVVAGGGKGTAATATRAHSKGER
SVIAAWSSSSSGRGTAGPVTKAGGVEGYASIGRSEASLGGPTADPTKSSR
APSSTSSDTANPALDNLFRVFLVFQEMRSRGVRPDLRAYNALVNTCA
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mRNA from alignment at Ecto-sp13_S_contig19958:511..3046-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19958.6488.1 ID=mRNA_Ecto-sp13_S_contig19958.6488.1|Name=mRNA_Ecto-sp13_S_contig19958.6488.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2536bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19958:511..3046- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACCCTGTGCAGGTGCTGGAAGGGATGGTGGAGAGGCGAGACTCGCC
GGACGGTGAAACTTGGCTGCTACTGCTCAACGCCGTCGACACCGCCGGAG
CCCTAGACAAGGCCGTGGAGCTCATGGAACGCTCCAGGGCGGAGGGCCAC
GGCTCGGAGGTGCGCAACCGCAGCAGCCGCAGCAGAGCAGCAGCAACGAC
AACTTGTTGGGAGTATCGGTAGACACAGTGTGCCGTTTTCCCTGGGAGGG
TGTCGCGATGGGATTGTCTTCTCCTGCGGTGGTAGCCAGCGTTGTTGGAA
AGCAAACGCAGTACGTGTCGCGAATCTCTCATACGCAAGACCTGGTATAT
ATTGCTGGACATGCAACGAGTTATGTCCGTCTCGACCGTTGCTCTGGCGG
ATGTTGTCTCATTTCCCCTCCTCCACGCTCGCGGTCCGTACGCAAGTGTG
TCTACTCGTGTGCTGGGCGCTCTTCGTTTTGTGCTGGACACGAGTGTATC
AATCTCCGTCTCTCCTTGTTGAATTCCGTCTGGTCGCTATTGCCCCTATC
CATTATCCTGCCGCCTAGATTAACGAGCTCACCTACTCGGCACTCCTAGG
AGCTTGCGGCCGCGCCAAGAAGCTGGCCCGGGCCTTTCGGATTGTGCAGA
GCATGAGGGATACAGGTATGTTGATCAGACAGCGTTGCCATCAAAATTGT
GGAGCTTGCCACATCCTTCTACAACAGTAGCGGCTGTTTGATCCATCAAT
CTCCCCGCATGAAGTGTCTCCCATCTCCCTACAACCCGGGGACCTCTCAC
CCTTTTTTTTCCTGGACGATCATGACTGTGCTTTAAAATCGCTTGAAAAT
CGGTGCACCGACCTCTCGCAGAGGGCAGCACTTACGTACAACGCGCCGCA
TGAAGTTGCGAGGAGGGGGGTACCCTATATCGGCACCTTGATGAGCCCCA
CTCACCCCCATGTTACGATGAGTAAACCCCCGTGCCCTGCCCACACAACG
GCTGGCTCGCCCGCCAATTTCTGGGAAGCAGCAAGCCGAAACCGAAGATC
AAGATTTCTACATTCTAGACCGCTCTCGAGGGCGCATGGTCAATGGTCTA
ACAGCTTTTAATAAGTCATGCACAAAGTACGTACCCTCCCCCGTGCCCTC
TTCCCCTACCGTCTCCTCCTGCCCCGCATCCCCACGCGGGTTGGTGGTTC
TCGCGCGACAAGGCGTGAAGCCCACCGAGGGGACATACTTGGCTCTGATG
GAAGTATGCCGGCACAGCCGGGACAGCAAGGCGGCGGTAGAGGTGTTCGA
GGCCATGGAGACGGAGGGAGTGCGCCCGGGCGTGCGGAGCTACACGTCCT
TACTGAAGGTGCACTGCCCAGCTAGGATTGAGATGTTGCTGCTGCTGATT
GAGGCGGTGGTGGTATTGGGTGTGCGGCTGCCGTTGCATCTGTGGTTAAT
CCGTGCCACCTGCTTGTTCCTCGTGTTTTCCTCGTAATGTTGAATCTCTT
GCTCGATATGTATCCTGTTGCTATGCCCCAACCGCAGTTCACTGCCGGCG
AGTGAACGGACACTGCTGCTGTTGTTGTTGCTGTTGTTGTTGCTGCTGTT
GCTGTCGTTGTCGTCGTCGTCGTCGTCGTTCTTGTTCTTTCTTTCTCAAG
TTCTGTCGCTGGTTTAACTATCGCTGTTCGCTGCTGTGGTTGTTGTTCGT
GCTGTGGCTATACCTGCTGTTGCAGTGGTGGTTGAATAGCTGTCGTAGTC
TCACTCGAAGAACGGCTTCAAGGGACGAACCAACCCGGTGTTTCACAAAA
CACAGCATTTCATTACACCGAGAACCAAGCGACCCCCTCCTCAACGCGCA
CACGACCCGCCCCCCTCTTCTCCGGCGCCGGGCCACCCTCATCCCAGGCT
ATCTCCGAAGAAAATACCCTTCGCACCCGTGCCCTTCAGCGCACGAGAAT
GCTGGAGACACGCAGGTCGCCGCCCTCCTCTTCCGCGGTGCGTGGACCCG
CCGAGGACTCTTCCGTAGCCGTTGCCGCCACCGCTCCCGGTGCCCCCGCC
CAAAGCTCGCCCCTTCCATCGACAGCGCCAGGCACGACTGGTGGCGGTGC
CTCAAGCGCACCGCGAGATGGAGTGGACGGTCGTGGAAAATCGTTGGACG
TTCGGGTAAATGCGGCGGGAAAGACGAAGGTGGTCGCCGGGGGCGGGAAA
GGAACGGCTGCGACGGCGACCCGGGCCCACTCGAAAGGGGAACGTTCGGT
CATCGCCGCGTGGAGTTCTTCATCTTCCGGAAGAGGCACCGCAGGACCGG
TGACAAAAGCAGGAGGGGTGGAGGGTTACGCATCCATCGGTCGGTCCGAA
GCTTCTCTCGGTGGCCCCACCGCGGATCCAACCAAGTCGTCACGAGCACC
GTCGTCGACGTCCTCTGACACTGCCAACCCTGCCCTGGACAACCTTTTCC
GGGTGTTCCTCGTGTTCCAGGAGATGCGAAGCAGGGGGGTACGGCCCGAC
TTGCGCGCGTACAACGCGCTGGTCAACACGTGTGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19958:511..3046-

>mRNA_Ecto-sp13_S_contig19958.6488.1 ID=mRNA_Ecto-sp13_S_contig19958.6488.1|Name=mRNA_Ecto-sp13_S_contig19958.6488.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1041bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19958:511..3046- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACCCTGTGCAGGTGCTGGAAGGGATGGTGGAGAGGCGAGACTCGCC
GGACGGTGAAACTTGGCTGCTACTGCTCAACGCCGTCGACACCGCCGGAG
CCCTAGACAAGGCCGTGGAGCTCATGGAACGCTCCAGGGCGGAGGGCCAC
GGCTCGGAGATTAACGAGCTCACCTACTCGGCACTCCTAGGAGCTTGCGG
CCGCGCCAAGAAGCTGGCCCGGGCCTTTCGGATTGTGCAGAGCATGAGGG
ATACAGGCGTGAAGCCCACCGAGGGGACATACTTGGCTCTGATGGAAGTA
TGCCGGCACAGCCGGGACAGCAAGGCGGCGGTAGAGGTGTTCGAGGCCAT
GGAGACGGAGGGAGTGCGCCCGGGCGTGCGGAGCTACACGTCCTTACTGA
AGGCTATCTCCGAAGAAAATACCCTTCGCACCCGTGCCCTTCAGCGCACG
AGAATGCTGGAGACACGCAGGTCGCCGCCCTCCTCTTCCGCGGTGCGTGG
ACCCGCCGAGGACTCTTCCGTAGCCGTTGCCGCCACCGCTCCCGGTGCCC
CCGCCCAAAGCTCGCCCCTTCCATCGACAGCGCCAGGCACGACTGGTGGC
GGTGCCTCAAGCGCACCGCGAGATGGAGTGGACGGTCGTGGAAAATCGTT
GGACGTTCGGGTAAATGCGGCGGGAAAGACGAAGGTGGTCGCCGGGGGCG
GGAAAGGAACGGCTGCGACGGCGACCCGGGCCCACTCGAAAGGGGAACGT
TCGGTCATCGCCGCGTGGAGTTCTTCATCTTCCGGAAGAGGCACCGCAGG
ACCGGTGACAAAAGCAGGAGGGGTGGAGGGTTACGCATCCATCGGTCGGT
CCGAAGCTTCTCTCGGTGGCCCCACCGCGGATCCAACCAAGTCGTCACGA
GCACCGTCGTCGACGTCCTCTGACACTGCCAACCCTGCCCTGGACAACCT
TTTCCGGGTGTTCCTCGTGTTCCAGGAGATGCGAAGCAGGGGGGTACGGC
CCGACTTGCGCGCGTACAACGCGCTGGTCAACACGTGTGCG
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