mRNA_Ecto-sp13_S_contig19948.6487.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig19948.6487.1
Unique Name	mRNA_Ecto-sp13_S_contig19948.6487.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig19948.6487.1 vs. uniprot
Match: A0A6H5LAW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAW5_9PHAE)

HSP 1 Score: 201 bits (510), Expect = 8.630e-58
Identity = 101/106 (95.28%), Postives = 104/106 (98.11%), Query Frame = 1

Query:    1 PTSSAMFDPVFGPVGRSPLEKEAVLNVEDYLKLSLAGAACNALVRFFLHPVDCVKTTVQAEMGREVGSEENGMEGGGGEGWIGTVKGILKKGGVGELTRGIDVSTV 318
            P SSAMFDPVFGPVGRSPLEKEAVLNVEDYLKLSLAGAACNALVRFFLHPVDCVKTTVQAEMGREVG +E+GMEGGGGEGWIGTVKGILKKGGVGELTRGIDVST+
Sbjct:  672 PPSSAMFDPVFGPVGRSPLEKEAVLNVEDYLKLSLAGAACNALVRFFLHPVDCVKTTVQAEMGREVGGDESGMEGGGGEGWIGTVKGILKKGGVGELTRGIDVSTI 777

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BLAST of mRNA_Ecto-sp13_S_contig19948.6487.1 vs. uniprot
Match: D7FJL8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJL8_ECTSI)

HSP 1 Score: 196 bits (499), Expect = 1.340e-57
Identity = 102/107 (95.33%), Postives = 104/107 (97.20%), Query Frame = 1

Query:    1 PTSSAMFDPVFGPVGRSPLEKEAVLNVEDYLKLSLAGAACNALVRFFLHPVDCVKTTVQAEMGREVGSEENGMEGGGG-EGWIGTVKGILKKGGVGELTRGIDVSTV 318
            PTSSAMFDPVFGPVGRSPLEKEAVL VEDYLKLSLAGAACNALVRFFLHPVDCVKTTVQAEMGREV S+ENGMEGGGG EGWIGTVKGILKKGGVGELTRGIDVST+
Sbjct:  359 PTSSAMFDPVFGPVGRSPLEKEAVLKVEDYLKLSLAGAACNALVRFFLHPVDCVKTTVQAEMGREVRSDENGMEGGGGGEGWIGTVKGILKKGGVGELTRGIDVSTI 465

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BLAST of mRNA_Ecto-sp13_S_contig19948.6487.1 vs. uniprot
Match: A0A835ZA12_9STRA (Mitochondrial carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA12_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 4.870e-15
Identity = 36/61 (59.02%), Postives = 45/61 (73.77%), Query Frame = 1

Query:    1 PTSSAMFDPVFGPVGRSPLEKEAVLNVEDYLKLSLAGAACNALVRFFLHPVDCVKTTVQAE 183
            P  S + DP FGP+G SPLE+E  L VE YLKL+++GA CN LVR  LHP+D VKT +QA+
Sbjct:  522 PPPSRLADPAFGPIGLSPLEREPTLGVEQYLKLAMSGALCNGLVRTLLHPIDNVKTRMQAD 582

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BLAST of mRNA_Ecto-sp13_S_contig19948.6487.1 vs. uniprot
Match: A0A812RZZ6_9DINO (McfN protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812RZZ6_9DINO)

HSP 1 Score: 75.5 bits (184), Expect = 1.130e-13
Identity = 41/106 (38.68%), Postives = 61/106 (57.55%), Query Frame = 1

Query:    1 PTSSAMFDPVFGPVGRSPLEKEAVLNVEDYLKLSLAGAACNALVRFFLHPVDCVKTTVQAEMGREVGSEENGMEGGGGEGWIGTVKGILKKGGVGELTRGIDVSTV 318
            P   A  DP+FGP+GRSP+ +E  L+   YL+L+++GA C+A+VR  L P++ VKTT Q     E  + E G        +  T K +L+ GG G L +G D + +
Sbjct:  117 PERPASLDPLFGPLGRSPVARERALDASQYLRLAISGAVCSAVVRAVLQPLEVVKTTQQLSPPSEKNAGETGD-------FQSTAKSLLEAGGFGALYKGTDATVL 215

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BLAST of mRNA_Ecto-sp13_S_contig19948.6487.1 vs. uniprot
Match: A0A812KN50_9DINO (McfN protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812KN50_9DINO)

HSP 1 Score: 75.5 bits (184), Expect = 1.130e-13
Identity = 42/106 (39.62%), Postives = 62/106 (58.49%), Query Frame = 1

Query:    1 PTSSAMFDPVFGPVGRSPLEKEAVLNVEDYLKLSLAGAACNALVRFFLHPVDCVKTTVQAEMGREVGSEENGMEGGGGEGWIGTVKGILKKGGVGELTRGIDVSTV 318
            P   A  DP+FGP+GRSP+ +E  L+   YL+L+++GA C+A+VR  L P++ VKTT Q    RE  + E G        +  T K +L+ GG G L +G D + +
Sbjct:  661 PERPASLDPLFGPLGRSPVARERALDSSQYLRLAISGAVCSAVVRAVLQPLEVVKTTQQLSPPRENDAGEPGD-------FQSTAKSLLEAGGFGALYKGTDATVL 759

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BLAST of mRNA_Ecto-sp13_S_contig19948.6487.1 vs. uniprot
Match: A0A812TGB8_9DINO (Hypothetical protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812TGB8_9DINO)

HSP 1 Score: 75.1 bits (183), Expect = 1.320e-13
Identity = 43/106 (40.57%), Postives = 62/106 (58.49%), Query Frame = 1

Query:    1 PTSSAMFDPVFGPVGRSPLEKEAVLNVEDYLKLSLAGAACNALVRFFLHPVDCVKTTVQAEMGREVGSEENGMEGGGGEGWIGTVKGILKKGGVGELTRGIDVSTV 318
            P   A  DP+FGP+GRSP+ +E  L+   YL+L+++GA C+A+VR  L P++ VKTT Q     EV S  N    G    +  T K +L+ GG G L +G D + +
Sbjct:   41 PERPASLDPLFGPLGRSPVARERALDASQYLRLAISGAVCSAVVRAVLQPLEVVKTTQQPPSS-EVLSPPNDKNAGETGDFQSTAKSLLEAGGFGALYKGTDATVL 145

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BLAST of mRNA_Ecto-sp13_S_contig19948.6487.1 vs. uniprot
Match: A0A1Q9CVT4_SYMMI (Mitochondrial phosphate carrier protein n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9CVT4_SYMMI)

HSP 1 Score: 74.3 bits (181), Expect = 2.900e-13
Identity = 42/106 (39.62%), Postives = 64/106 (60.38%), Query Frame = 1

Query:    1 PTSSAMFDPVFGPVGRSPLEKEAVLNVEDYLKLSLAGAACNALVRFFLHPVDCVKTTVQAEMGREVGSEENGMEGGGGEGWIGTVKGILKKGGVGELTRGIDVSTV 318
            P   A  DP+FGP+GRSP+ +E  L+   YL+L+++GA C+A+VR  L P++ VKTT Q  +     S++N  E G    +  T K +L+ GG G L +G D + +
Sbjct: 1347 PERPASLDPLFGPLGRSPVARERALDASQYLRLAISGAVCSAVVRAVLQPLEVVKTTQQPPLSPP--SDKNAGETGD---FQSTAKSLLEAGGFGALYKGTDATVL 1447

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BLAST of mRNA_Ecto-sp13_S_contig19948.6487.1 vs. uniprot
Match: A0A8J6C5U2_DIALT (Uncharacterized protein n=3 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C5U2_DIALT)

HSP 1 Score: 70.5 bits (171), Expect = 6.270e-12
Identity = 32/60 (53.33%), Postives = 43/60 (71.67%), Query Frame = 1

Query:    1 PTSSAMFDPVFGPVGRSPLEKEAVLNVEDYLKLSLAGAACNALVRFFLHPVDCVKTTVQA 180
            P   A+FDPVFGP+GRSP+EK+A L+V  Y++L+ +G  C A+    L P+D VKT VQA
Sbjct:  489 PRPFAVFDPVFGPIGRSPVEKQATLDVSQYMRLAFSGGLCAAIGHALLTPLDVVKTRVQA 548

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BLAST of mRNA_Ecto-sp13_S_contig19948.6487.1 vs. uniprot
Match: W7TIQ8_9STRA (Mitochondrial phosphate carrier protein 2 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TIQ8_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 2.990e-11
Identity = 31/74 (41.89%), Postives = 49/74 (66.22%), Query Frame = 1

Query:    1 PTSSAMFDPVFGPVGRSPLEKEAVLNVEDYLKLSLAGAACNALVRFFLHPVDCVKTTVQAEMGREVGSEENGME 222
            P  + ++DP+FG VGRSP+E E  L +E+Y++L+L+G  C ++VR  L P++ +KT +QA  G   G    G+E
Sbjct:  688 PEENTLYDPIFGRVGRSPIEMERELTLENYVRLALSGGCCISIVRTSLQPLEILKTRLQARPGLYPGGWREGIE 761

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BLAST of mRNA_Ecto-sp13_S_contig19948.6487.1 vs. uniprot
Match: A0A812HYI7_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812HYI7_9DINO)

HSP 1 Score: 68.6 bits (166), Expect = 3.010e-11
Identity = 39/106 (36.79%), Postives = 62/106 (58.49%), Query Frame = 1

Query:   13 AMFDPVFGPVGRSPLEKEAVLNVEDYLKLSLAGAACNALVRFFLHPVDCVKTTVQ----AEMGREVGSEENGMEGGGGEGWIGTVKGILKKGGVGELTRGIDVSTV 318
            A  DP+FGP+GRSP+ +E  L+   YL+L+++GA C+A+VR  L P++ VK T Q    A  GR+   + +  +         T K +L+ GG+G L +G D + +
Sbjct:  833 ASLDPLFGPLGRSPVARERGLDASQYLRLAISGAVCSAVVRAVLQPLEVVKITQQLATPAAAGRKEAVDVDDFQS--------TAKNLLEVGGLGALYKGTDATVL 930

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig19948.6487.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig19948.6487.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15


Match Name	E-value	Identity	Description
A0A6H5LAW5_9PHAE	8.630e-58	95.28	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FJL8_ECTSI	1.340e-57	95.33	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A835ZA12_9STRA	4.870e-15	59.02	Mitochondrial carrier domain-containing protein n=...	[more]
A0A812RZZ6_9DINO	1.130e-13	38.68	McfN protein n=1 Tax=Symbiodinium sp. CCMP2456 Tax...	[more]
A0A812KN50_9DINO	1.130e-13	39.62	McfN protein n=1 Tax=Symbiodinium sp. CCMP2592 Tax...	[more]
A0A812TGB8_9DINO	1.320e-13	40.57	Hypothetical protein n=1 Tax=Symbiodinium necroapp...	[more]
A0A1Q9CVT4_SYMMI	2.900e-13	39.62	Mitochondrial phosphate carrier protein n=3 Tax=Sy...	[more]
A0A8J6C5U2_DIALT	6.270e-12	53.33	Uncharacterized protein n=3 Tax=Diacronema lutheri...	[more]
W7TIQ8_9STRA	2.990e-11	41.89	Mitochondrial phosphate carrier protein 2 n=2 Tax=...	[more]
A0A812HYI7_9DINO	3.010e-11	36.79	Hypothetical protein n=1 Tax=Symbiodinium natans T...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig19948	contig	Ecto-sp13_S_contig19948:192..1280 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	0
Start	1
Seed ortholog score	191.4
Seed ortholog evalue	2e-46
Seed eggNOG ortholog	2880.D7FJL8
Model size	318
KEGG ko	ko:K15102
KEGG TC	2.A.29.4
Hectar predicted targeting category	other localisation
Exons	2
EggNOG free text desc.	phosphate ion transmembrane transport
EggNOG OGs	KOG0767@1,KOG0767@2759
Ec32 ortholog description	Mitochondrial carrier domain
Ec32 ortholog	Ec-09_000290.1
Cds size	303
COG Functional cat.	U
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko02000,ko04147

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681463004.3149416-CDS-Ecto-sp13_S_contig19948:191..425	1681463004.3149416-CDS-Ecto-sp13_S_contig19948:191..425	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig19948 192..425 -
1681463004.3252487-CDS-Ecto-sp13_S_contig19948:1196..1265	1681463004.3252487-CDS-Ecto-sp13_S_contig19948:1196..1265	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig19948 1197..1265 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681463004.3336782-UTR-Ecto-sp13_S_contig19948:1265..1280	1681463004.3336782-UTR-Ecto-sp13_S_contig19948:1265..1280	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig19948 1266..1280 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig19948.6487.1	prot_Ecto-sp13_S_contig19948.6487.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig19948 192..1265 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig19948:192..1280-
coding sequence from alignment at Ecto-sp13_S_contig19948:192..1280-

protein sequence of mRNA_Ecto-sp13_S_contig19948.6487.1

>prot_Ecto-sp13_S_contig19948.6487.1 ID=prot_Ecto-sp13_S_contig19948.6487.1|Name=mRNA_Ecto-sp13_S_contig19948.6487.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=101bp
MFDPVFGPVGRSPLEKEAVLNVEDYLKLSLAGAACNALVRFFLHPVDCVK
TTVQAEMGREVGSEENGMEGGGGEGWIGTVKGILKKGGVGELTRGIDVST
V

mRNA from alignment at Ecto-sp13_S_contig19948:192..1280-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig19948.6487.1 ID=mRNA_Ecto-sp13_S_contig19948.6487.1|Name=mRNA_Ecto-sp13_S_contig19948.6487.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1089bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19948:192..1280- (Ectocarpus species13 EcNAP12_S_4_19m)
CCCACCAGTAGTGCCATGTTCGACCCGGTGTTTGGTCCGGTCGGGAGGTC
TCCGTTGGAGAAGGAGGCTGTCCTCAACGTGGAGGTGAGCCACATGGAGA
TGTGTTGCGTCGGAGATCGTGTCGGAGAGGTCGTAGATCGCGTAGCAGAT
CGTCGTAGGTCGTGTGTGGTCCGGCGGGCAGGTCTCCGTTAGAGAAGGAG
GCTGCATTCAAAGTATAGGTTACACATACAGAGGCGTATCGCGTCGTAGG
TCGCGCCGTACGTCGTCGTAGATCGTGTTGGAGATCGTCCGAGATCGTGG
CGGAGAAATCGGGGTTGCACGAACGTCTTCGGAGATTGAATTGAAGGATT
GAACGGAAGTCGACCAAGCAAAATACACTCTACCCCCCCCAACACTTGGC
CCATTTCAAACATGCCAATCTATCTCTCACCGCTTGACGAAAGCATTCCG
TTCCTTACGCATACACCATGTCGAAACGATCTTCTACCCGCGTTTGATCA
CGCGTGTACTCGAACGTCTGTCGTCTGCTCTCTACACGGGACTGTCGTCT
TGTCTTACTTCCAAAGAAACGAGCGCGTCTCTCATTCCACACCCTGTCCC
TGAACCACATACCATGTCGACCAAATAGTAATTATAATAGTAAAACCCGC
ATTTTATTCTGCTTGCAATCTCTCCTCTGCTCCCCGTTCAGGACGATCTA
TCTCACTCACCGCACCACACAACAAGAACGTTCCCTTCCATCGTACGCAT
ACACCATATCGAAACATTCATCATTATTCCCGGCCTTACTTACGTACTTC
CGCGTGCACGCTCGCACCCTCCTGTCTGCCCCCCCCCCCTCCCCCCTCCC
TACAGGACTACCTCAAGCTGTCCTTGGCGGGGGCCGCCTGCAACGCCCTG
GTCCGCTTCTTCCTGCACCCCGTGGACTGCGTTAAGACTACGGTGCAGGC
CGAGATGGGACGGGAGGTCGGCAGCGAAGAGAACGGTATGGAGGGGGGCG
GCGGCGAGGGTTGGATCGGTACCGTCAAGGGCATCCTCAAGAAGGGTGGA
GTGGGCGAGCTAACCCGGGGCATCGACGTGTCTACGGTG

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19948:192..1280-

>mRNA_Ecto-sp13_S_contig19948.6487.1 ID=mRNA_Ecto-sp13_S_contig19948.6487.1|Name=mRNA_Ecto-sp13_S_contig19948.6487.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=303bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19948:192..1280- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCGACCCGGTGTTTGGTCCGGTCGGGAGGTCTCCGTTGGAGAAGGA
GGCTGTCCTCAACGTGGAGGACTACCTCAAGCTGTCCTTGGCGGGGGCCG
CCTGCAACGCCCTGGTCCGCTTCTTCCTGCACCCCGTGGACTGCGTTAAG
ACTACGGTGCAGGCCGAGATGGGACGGGAGGTCGGCAGCGAAGAGAACGG
TATGGAGGGGGGCGGCGGCGAGGGTTGGATCGGTACCGTCAAGGGCATCC
TCAAGAAGGGTGGAGTGGGCGAGCTAACCCGGGGCATCGACGTGTCTACG
GTG