mRNA_Ecto-sp13_S_contig19943.6486.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19943.6486.1
Unique NamemRNA_Ecto-sp13_S_contig19943.6486.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig19943.6486.1 vs. uniprot
Match: A0A6H5JAN0_9PHAE (NYD-SP28 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JAN0_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 1.630e-37
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 1
Query:    1 QTLEQQLEEMRATYQLNTEKLEYNYRVLTERDIENSATLSHQKRKLTKLKDALSGLVQRYQETDTRDKKRNEELTEEF 234
            QTLEQQLEEMRATYQLNTEKLEYNYRVLTERD+ENSATLSHQKRKLTKLKDALSGLVQRYQETDTRDKKRNEELTEEF
Sbjct:  295 QTLEQQLEEMRATYQLNTEKLEYNYRVLTERDMENSATLSHQKRKLTKLKDALSGLVQRYQETDTRDKKRNEELTEEF 372          
BLAST of mRNA_Ecto-sp13_S_contig19943.6486.1 vs. uniprot
Match: A0A835Z4S9_9STRA (Sperm tail-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4S9_9STRA)

HSP 1 Score: 123 bits (308), Expect = 6.030e-31
Identity = 66/78 (84.62%), Postives = 73/78 (93.59%), Query Frame = 1
Query:    1 QTLEQQLEEMRATYQLNTEKLEYNYRVLTERDIENSATLSHQKRKLTKLKDALSGLVQRYQETDTRDKKRNEELTEEF 234
            QTLEQQLEEMRATYQLNTEKLEYNYRVLTERD+ENSATL+HQKRKLTKLKDALS L  R+ ET+ RD++RNEELTEE+
Sbjct:  270 QTLEQQLEEMRATYQLNTEKLEYNYRVLTERDMENSATLAHQKRKLTKLKDALSALAARHAETEARDRRRNEELTEEY 347          
BLAST of mRNA_Ecto-sp13_S_contig19943.6486.1 vs. uniprot
Match: F0WFE3_9STRA (Uncharacterized protein AlNc14C82G5332 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WFE3_9STRA)

HSP 1 Score: 105 bits (261), Expect = 1.390e-24
Identity = 56/78 (71.79%), Postives = 68/78 (87.18%), Query Frame = 1
Query:    1 QTLEQQLEEMRATYQLNTEKLEYNYRVLTERDIENSATLSHQKRKLTKLKDALSGLVQRYQETDTRDKKRNEELTEEF 234
            QTLEQQLE+MRA YQLNTEKLEYNYRVLTERD+ENSATLS  KRKLT+ KD LS L  +Y +++TRD++ N++LTE+F
Sbjct:  280 QTLEQQLEDMRAAYQLNTEKLEYNYRVLTERDMENSATLSQLKRKLTRFKDTLSTLRAKYNQSETRDRQNNQQLTEDF 357          
BLAST of mRNA_Ecto-sp13_S_contig19943.6486.1 vs. uniprot
Match: A0A7S3XMC1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMC1_HETAK)

HSP 1 Score: 101 bits (251), Expect = 6.740e-24
Identity = 54/78 (69.23%), Postives = 66/78 (84.62%), Query Frame = 1
Query:    1 QTLEQQLEEMRATYQLNTEKLEYNYRVLTERDIENSATLSHQKRKLTKLKDALSGLVQRYQETDTRDKKRNEELTEEF 234
            QTL++QLEEMRATYQLNTEKLEYN+RVLTERD EN +TL+ QKR+  +LKDALS LV RY E D   ++RN+ELTE++
Sbjct:  185 QTLQEQLEEMRATYQLNTEKLEYNFRVLTERDNENKSTLAQQKRRQNRLKDALSALVHRYHEADATARRRNDELTEKY 262          
BLAST of mRNA_Ecto-sp13_S_contig19943.6486.1 vs. uniprot
Match: A0A024FY05_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024FY05_9STRA)

HSP 1 Score: 102 bits (255), Expect = 9.030e-24
Identity = 56/78 (71.79%), Postives = 68/78 (87.18%), Query Frame = 1
Query:    1 QTLEQQLEEMRATYQLNTEKLEYNYRVLTERDIENSATLSHQKRKLTKLKDALSGLVQRYQETDTRDKKRNEELTEEF 234
            QTLEQQLE+MRA YQLNTEKLEYNYRVLTERD+ENSATLS  KRKLT+ K+ LS L  +Y +++TRD+++N+ LTEEF
Sbjct:  281 QTLEQQLEDMRAAYQLNTEKLEYNYRVLTERDMENSATLSQLKRKLTRFKETLSLLRTKYNQSETRDRQQNQVLTEEF 358          
BLAST of mRNA_Ecto-sp13_S_contig19943.6486.1 vs. uniprot
Match: A0A7S0NBA1_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0NBA1_9CRYP)

HSP 1 Score: 91.3 bits (225), Expect = 6.300e-20
Identity = 49/78 (62.82%), Postives = 65/78 (83.33%), Query Frame = 1
Query:    1 QTLEQQLEEMRATYQLNTEKLEYNYRVLTERDIENSATLSHQKRKLTKLKDALSGLVQRYQETDTRDKKRNEELTEEF 234
            Q LEQQLE MR+TYQLNTEKLEYN+RVL+ERD EN++T+  QKRKL +L+D+LS LV +Y +TD + ++ N ELT+E+
Sbjct:  284 QKLEQQLEVMRSTYQLNTEKLEYNFRVLSERDSENTSTIGQQKRKLARLQDSLSSLVAKYGKTDRQYRQENAELTDEY 361          
BLAST of mRNA_Ecto-sp13_S_contig19943.6486.1 vs. uniprot
Match: A0A7S3WX96_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3WX96_9SPIT)

HSP 1 Score: 90.9 bits (224), Expect = 1.370e-19
Identity = 49/78 (62.82%), Postives = 61/78 (78.21%), Query Frame = 1
Query:    1 QTLEQQLEEMRATYQLNTEKLEYNYRVLTERDIENSATLSHQKRKLTKLKDALSGLVQRYQETDTRDKKRNEELTEEF 234
            QTLEQQLEEMRATYQLN EKL+YNYRVL ERD EN+ T+  QK+KLT++ D LS L  +Y   + R K +N++LTEE+
Sbjct:  194 QTLEQQLEEMRATYQLNQEKLDYNYRVLVERDAENANTIKQQKKKLTRMTDVLSALKAKYAREEKRYKSQNQDLTEEY 271          
BLAST of mRNA_Ecto-sp13_S_contig19943.6486.1 vs. uniprot
Match: R1FCG6_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FCG6_EMIHU)

HSP 1 Score: 90.9 bits (224), Expect = 1.390e-19
Identity = 49/78 (62.82%), Postives = 61/78 (78.21%), Query Frame = 1
Query:    1 QTLEQQLEEMRATYQLNTEKLEYNYRVLTERDIENSATLSHQKRKLTKLKDALSGLVQRYQETDTRDKKRNEELTEEF 234
            QTLE+QLEEMRATYQLN EKL+YNYRVL ERD EN+ T+ HQKRKLT++ D LS L  ++   + R K+ N ELTE++
Sbjct:  229 QTLEKQLEEMRATYQLNQEKLDYNYRVLVERDTENTTTIKHQKRKLTRMADVLSALRAKHAREEKRYKQENAELTEDY 306          
BLAST of mRNA_Ecto-sp13_S_contig19943.6486.1 vs. uniprot
Match: A0A0P1AXG6_PLAHL (Dynein regulatory complex protein 1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AXG6_PLAHL)

HSP 1 Score: 90.5 bits (223), Expect = 1.920e-19
Identity = 50/78 (64.10%), Postives = 61/78 (78.21%), Query Frame = 1
Query:    1 QTLEQQLEEMRATYQLNTEKLEYNYRVLTERDIENSATLSHQKRKLTKLKDALSGLVQRYQETDTRDKKRNEELTEEF 234
            QTLEQQLE+MRATYQLNTE       VLTERD+ENSATL  QKRKL +LK+ L+ L+ +Y +TD RD++ N ELTEE+
Sbjct:  281 QTLEQQLEDMRATYQLNTEXXXXXXXVLTERDMENSATLGQQKRKLARLKETLATLITKYNQTDARDRRLNAELTEEY 358          
BLAST of mRNA_Ecto-sp13_S_contig19943.6486.1 vs. uniprot
Match: A0A7R9UQQ2_DIALT (Hypothetical protein (Fragment) n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9UQQ2_DIALT)

HSP 1 Score: 89.0 bits (219), Expect = 4.910e-19
Identity = 49/78 (62.82%), Postives = 60/78 (76.92%), Query Frame = 1
Query:    1 QTLEQQLEEMRATYQLNTEKLEYNYRVLTERDIENSATLSHQKRKLTKLKDALSGLVQRYQETDTRDKKRNEELTEEF 234
            QTLEQ LEEMRATYQLN+EKL+YNYRVL ERD EN+ T+  QKRK+ +L+D LSGL  +Y   D + K  N +LT+EF
Sbjct:  290 QTLEQDLEEMRATYQLNSEKLDYNYRVLQERDQENTHTIQQQKRKVARLQDVLSGLKAKYAREDKKFKAENTDLTDEF 367          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19943.6486.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JAN0_9PHAE1.630e-3798.72NYD-SP28 domain-containing protein n=2 Tax=Ectocar... [more]
A0A835Z4S9_9STRA6.030e-3184.62Sperm tail-domain-containing protein n=1 Tax=Tribo... [more]
F0WFE3_9STRA1.390e-2471.79Uncharacterized protein AlNc14C82G5332 n=1 Tax=Alb... [more]
A0A7S3XMC1_HETAK6.740e-2469.23Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A024FY05_9STRA9.030e-2471.79Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A7S0NBA1_9CRYP6.300e-2062.82Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A7S3WX96_9SPIT1.370e-1962.82Hypothetical protein n=1 Tax=Strombidinopsis acumi... [more]
R1FCG6_EMIHU1.390e-1962.82Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A0P1AXG6_PLAHL1.920e-1964.10Dynein regulatory complex protein 1 n=1 Tax=Plasmo... [more]
A0A7R9UQQ2_DIALT4.910e-1962.82Hypothetical protein (Fragment) n=1 Tax=Diacronema... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19943contigEcto-sp13_S_contig19943:497..1663 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score130.6
Seed ortholog evalue2.9e-28
Seed eggNOG ortholog2880.D8LIH6
Preferred nameDRC1
Model size234
KEGG koko:K19754
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001539,GO:0001578,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007275,GO:0007368,GO:0007389,GO:0007507,GO:0008150,GO:0009799,GO:0009855,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0032501,GO:0032502,GO:0032838,GO:0034622,GO:0035082,GO:0040011,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0048513,GO:0048731,GO:0048856,GO:0048870,GO:0051179,GO:0051674,GO:0060271,GO:0060285,GO:0065003,GO:0070286,GO:0070925,GO:0071840,GO:0072359,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038
Exons2
EggNOG free text desc.cilium-dependent cell motility
EggNOG OGs2CMDT@1,2QQ2B@2759
Cds size207
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463004.2667694-UTR-Ecto-sp13_S_contig19943:496..5231681463004.2667694-UTR-Ecto-sp13_S_contig19943:496..523Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19943 497..523 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463004.2802527-CDS-Ecto-sp13_S_contig19943:523..6701681463004.2802527-CDS-Ecto-sp13_S_contig19943:523..670Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19943 524..670 +
1681463004.2892776-CDS-Ecto-sp13_S_contig19943:1603..16631681463004.2892776-CDS-Ecto-sp13_S_contig19943:1603..1663Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19943 1604..1663 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19943.6486.1prot_Ecto-sp13_S_contig19943.6486.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19943 524..1663 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19943.6486.1

>prot_Ecto-sp13_S_contig19943.6486.1 ID=prot_Ecto-sp13_S_contig19943.6486.1|Name=mRNA_Ecto-sp13_S_contig19943.6486.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=69bp
MRATYQLNTEKLEYNYRVLTERDIENSATLSHQKRKLTKLKDALSGLVQR
YQETDTRDKKRNEELTEEF
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mRNA from alignment at Ecto-sp13_S_contig19943:497..1663+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19943.6486.1 ID=mRNA_Ecto-sp13_S_contig19943.6486.1|Name=mRNA_Ecto-sp13_S_contig19943.6486.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1167bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19943:497..1663+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGACTCTCGAGCAGCAGCTGGAGGAGATGCGGGCCACGTACCAGCTCAA CACCGAGAAGCTCGAGTACAACTACCGCGTCCTCACGGAGAGGGACATCG AGAACAGCGCCACTCTCTCCCACCAGAAACGCAAGCTCACGAAGCTCAAA GACGCCCTCTCGGGCCTCGTGCAGGTGGGGAGGGAGTTGTACGCGTGTTT TCCGAACGGGAAGGGGGGATGTTTTCGGAGGGGGGGGGTACTCGTGTAAA CGCATGCCGCAGTCGGCAGACCTTGGCGTCCCTACATTGCCGGAACTAAG CGATATGTTCCCAGTTTTTGCCAGCCCAGTCTGCGTTTCACAAGGATGGA CCAGAAGCTGGTCATGGGGGAGTACTCATGTTTTGCGTCAACTGTTAGAC CGTTGACCAGGGGGGGGTATTTGGGTGCCGATATTTGCGGTTCTTGGTGT TTCTTGGGCAACAATCAGAGAGGTTTCCCATGAACATGTTCGTAGCAATC GAGTATAGCTCGAGACGTGCGGACTGAGGACGTGGGGCTCGGGCCACTTA TCCCGCCCGAGAAGCTACCAACCTTGCCAGGCAGATGCGGGGGGATTTTC GGGCTTTGCGTAATGCGAGCAGCGGAGGAGAAGAGTTTACGGCATGGTGG AGGAAGGCGGCATTGGCACGATCGTGTTCGTGTTTTCGTGTTTGAGCGGA TATCTGCTGACCTCTCTGCTCTTGTTCAGAGCTAATGCTACCGAAAAACA CACGGCGACAGTGTAAGGCCTTGACGCACACACCAATTTTGGAGATCAAG ATTGGTTTATCAACCTCTCTCAGCCGAGACGTCAGGCGCATAATATGCGC CAAACATCACCCCCCCCCGCCGCTCAATTACCTGTCCCCCGGACGAACGT AGAAACTATTAGATGCTTCAGCGAACGTTAGCGATCTATACCTGAAAGTG GCGTCCGGGGCACCAATTGTTGTACACATGATTCCATACATCCATTTTCT CGTCCTCGCCGTTTACGGGAGAAAATAATCTGGAGAGGTCAGAACAACCG GTCATTCCTTTTCTTTCCCCTTCAGTGTCTATCTCCTTCTCTGTTTCTCT CTCAAAGCGCTACCAAGAGACCGACACCCGCGACAAGAAGCGAAACGAGG AGCTGACGGAGGAGTTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19943:497..1663+

>mRNA_Ecto-sp13_S_contig19943.6486.1 ID=mRNA_Ecto-sp13_S_contig19943.6486.1|Name=mRNA_Ecto-sp13_S_contig19943.6486.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=207bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19943:497..1663+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGGGCCACGTACCAGCTCAACACCGAGAAGCTCGAGTACAACTACCG
CGTCCTCACGGAGAGGGACATCGAGAACAGCGCCACTCTCTCCCACCAGA
AACGCAAGCTCACGAAGCTCAAAGACGCCCTCTCGGGCCTCGTGCAGCGC
TACCAAGAGACCGACACCCGCGACAAGAAGCGAAACGAGGAGCTGACGGA
GGAGTTC
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