mRNA_Ecto-sp13_S_contig19921.6481.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19921.6481.1
Unique NamemRNA_Ecto-sp13_S_contig19921.6481.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19921.6481.1 vs. uniprot
Match: D7FJY9_ECTSI (Palmitoyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJY9_ECTSI)

HSP 1 Score: 198 bits (504), Expect = 7.770e-60
Identity = 112/117 (95.73%), Postives = 112/117 (95.73%), Query Frame = 1 
Query:    1 NAALGWTFLRESAAGGTPLSAFFRAWWLLLLSALTTLSLVTLTTKDPGNVRKSTAQAGSSPSGMGXXXXXXXXVGDDQLCPASGSLEGAGGGLAQQQ-YFTQVCSLCNYLKPARAHH 348
            NAALGWTFLRESAAGGTPLSAFFRAWWLLLLSALTTLSLVTLTTKDPGNVRKSTAQAGSSPSGMGXXXXXXXX    QLCPASGSLEGAGGGLAQQQ YFTQVCSLCNYLKPARAHH
Sbjct:   15 NAALGWTFLRESAAGGTPLSAFFRAWWLLLLSALTTLSLVTLTTKDPGNVRKSTAQAGSSPSGMGXXXXXXXXXXXXQLCPASGSLEGAGGGLAQQQQYFTQVCSLCNYLKPARAHH 131
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19921.6481.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJY9_ECTSI7.770e-6095.73Palmitoyltransferase n=2 Tax=Ectocarpus TaxID=2879... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19921contigEcto-sp13_S_contig19921:1668..2576 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score197.6
Seed ortholog evalue3.4e-48
Seed eggNOG ortholog2880.D7FJY9
Model size371
KEGG rclassRC01904
KEGG koko:K14423,ko:K20028
KEGG ReactionR07482
KEGG Pathwayko00100,ko01100,ko01110,map00100,map01100,map01110
Hectar predicted targeting categorysignal peptide
GOsGO:0000138,GO:0000254,GO:0003674,GO:0003824,GO:0004497,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005783,GO:0005789,GO:0005794,GO:0005795,GO:0005802,GO:0006629,GO:0006694,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0008202,GO:0008610,GO:0009058,GO:0010150,GO:0012505,GO:0016020,GO:0016125,GO:0016126,GO:0016417,GO:0016491,GO:0016705,GO:0016709,GO:0016740,GO:0016746,GO:0016747,GO:0019222,GO:0019707,GO:0031323,GO:0031410,GO:0031982,GO:0031984,GO:0031985,GO:0032501,GO:0032502,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044238,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0048366,GO:0048367,GO:0048731,GO:0048827,GO:0048831,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0051239,GO:0055114,GO:0065007,GO:0071704,GO:0090693,GO:0097708,GO:0098791,GO:0098827,GO:0099402,GO:0140096,GO:1900055,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617,GO:2000024,GO:2000026,GO:2000377
Exons2
EggNOG free text desc.protein-cysteine S-palmitoyltransferase activity
EggNOG OGsCOG5273@1,KOG1315@2759
EC2.3.1.225
Cds size369
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463004.0585756-CDS-Ecto-sp13_S_contig19921:1667..19521681463004.0585756-CDS-Ecto-sp13_S_contig19921:1667..1952Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19921 1668..1952 +
1681463004.0689213-CDS-Ecto-sp13_S_contig19921:2492..25761681463004.0689213-CDS-Ecto-sp13_S_contig19921:2492..2576Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19921 2493..2576 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19921.6481.1prot_Ecto-sp13_S_contig19921.6481.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19921 1668..2576 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19921.6481.1

>prot_Ecto-sp13_S_contig19921.6481.1 ID=prot_Ecto-sp13_S_contig19921.6481.1|Name=mRNA_Ecto-sp13_S_contig19921.6481.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=123bp
NAALGWTFLRESAAGGTPLSAFFRAWWLLLLSALTTLSLVTLTTKDPGNV
RKSTAQAGSSPSGMGGGTGGGGGVGDDQLCPASGSLEGAGGGLAQQQYFT
QVCSLCNYLKPARAHHCRICDR*
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mRNA from alignment at Ecto-sp13_S_contig19921:1668..2576+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19921.6481.1 ID=mRNA_Ecto-sp13_S_contig19921.6481.1|Name=mRNA_Ecto-sp13_S_contig19921.6481.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=909bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19921:1668..2576+ (Ectocarpus species13 EcNAP12_S_4_19m)
AACGCTGCCCTGGGGTGGACGTTTCTCCGCGAGTCAGCTGCAGGCGGCAC
GCCGCTCTCGGCCTTCTTCCGGGCGTGGTGGCTGCTGCTGCTGTCGGCGC
TGACGACCCTTTCGCTGGTAACGTTAACAACCAAGGACCCGGGTAACGTC
AGGAAATCCACAGCACAAGCTGGGTCGTCACCGTCGGGCATGGGCGGCGG
CACCGGTGGAGGAGGGGGTGTGGGGGACGACCAGCTGTGCCCCGCCTCGG
GGTCTCTGGAGGGTGCAGGGGGCGGCTTGGCACAGGTATTTGGTCTGTGT
TTTTTTTTCAGCATGTCATCACAGAGAGACTACCCGTTCGAGATAGGACT
GCTGTACCACAGTCGAATGGGGGGTGTTGAGAGTCTTTGCAGTGAGTGTT
GGGGGGGGGGGCGAGATGATGGTGGTGGTAGGTTCCACGAGGGAGGGTGT
TATCTAACGTGGTCGTTACTGCGTTATGTTGCCAGGCTAGAGGCGTTTGC
CACACATCAAGACGGGGCAGTCATACACTGATCCTGAATAGATGCGCTCC
TGACGTGTTTGCCGAAAGCGTCGACGTGTCGTCGGCTACTGCAGCAACGT
GGACGTCGTCCACGCTGAAGTATAAGTATTGTAAGCAGTTGGGCGTCTTT
GATTTCAGCATCTGGCATCGAAAAGCGGTCGGTTTGAGATGACCCTCACC
ATATACATGACCGCACAAATAAACAAGGAGAGAGAGTTTCACCGCTTTTT
TTGTCGTCCCGCACTCCTCGCCTTCGCTCTGTTGTGGTGTGTGTTTTGGC
CCATTTTTTCTTGACATCGCAGCAGCAACAGTACTTCACGCAGGTCTGCT
CTCTGTGCAACTACCTCAAGCCGGCAAGGGCTCACCACTGCCGAATATGC
GATCGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19921:1668..2576+

>mRNA_Ecto-sp13_S_contig19921.6481.1 ID=mRNA_Ecto-sp13_S_contig19921.6481.1|Name=mRNA_Ecto-sp13_S_contig19921.6481.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=369bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19921:1668..2576+ (Ectocarpus species13 EcNAP12_S_4_19m)
AACGCTGCCCTGGGGTGGACGTTTCTCCGCGAGTCAGCTGCAGGCGGCAC
GCCGCTCTCGGCCTTCTTCCGGGCGTGGTGGCTGCTGCTGCTGTCGGCGC
TGACGACCCTTTCGCTGGTAACGTTAACAACCAAGGACCCGGGTAACGTC
AGGAAATCCACAGCACAAGCTGGGTCGTCACCGTCGGGCATGGGCGGCGG
CACCGGTGGAGGAGGGGGTGTGGGGGACGACCAGCTGTGCCCCGCCTCGG
GGTCTCTGGAGGGTGCAGGGGGCGGCTTGGCACAGCAACAGTACTTCACG
CAGGTCTGCTCTCTGTGCAACTACCTCAAGCCGGCAAGGGCTCACCACTG
CCGAATATGCGATCGGTGA
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