mRNA_Ecto-sp13_S_contig19911.6478.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19911.6478.1
Unique NamemRNA_Ecto-sp13_S_contig19911.6478.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig19911.6478.1 vs. uniprot
Match: A0A6H5JMY7_9PHAE (PIPK domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JMY7_9PHAE)

HSP 1 Score: 464 bits (1195), Expect = 2.180e-161
Identity = 227/233 (97.42%), Postives = 231/233 (99.14%), Query Frame = 1
Query:    1 SQQDKYVFPPAGAGGRLPTPSHKLNRTFKFRDYAPKVFKNLRGIFGIDEASYMNSVAGDYDYLELITNSKSGSFFFYSHDQKYIIKNMKRAEAKFFRSILPQYYEHHRTHPDSVLIRFCGMYLVKKGHRKIPFIVMKCIDGTAQMKIHKKYDLKGSKVHRTAKEGEKVLKDNNLREAKTKFRLGSQRDAFLKVVRSDAEFLRDVNVMDYSMFVSVHDASRPPERTLQRGYTEL 699
            +QQDKYVFPPAGAGGRLPTPSHKLNRTFKFRDYAPKVFKNLRG+FGIDEA YMNSVAGDYDYLELITNSKSGSFFFYSHDQKYIIKNMKRAEAKFFRSILPQYYEHHRTHPDSVLIRFCGMYLVKKGHRKIPFIVMKCIDGTAQMKIHKKYDLKGSKVHRTAKEGEKVLKDNNLREAKTKFRLGSQRDAFLKVVRSDAEFLRDVNVMDYSMFVSVH+ASRPPERT+QRGYTE 
Sbjct:  123 TQQDKYVFPPAGAGGRLPTPSHKLNRTFKFRDYAPKVFKNLRGLFGIDEALYMNSVAGDYDYLELITNSKSGSFFFYSHDQKYIIKNMKRAEAKFFRSILPQYYEHHRTHPDSVLIRFCGMYLVKKGHRKIPFIVMKCIDGTAQMKIHKKYDLKGSKVHRTAKEGEKVLKDNNLREAKTKFRLGSQRDAFLKVVRSDAEFLRDVNVMDYSMFVSVHEASRPPERTIQRGYTEF 355          
BLAST of mRNA_Ecto-sp13_S_contig19911.6478.1 vs. uniprot
Match: D8LLT5_ECTSI (PIPK domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLT5_ECTSI)

HSP 1 Score: 333 bits (853), Expect = 6.100e-108
Identity = 163/228 (71.49%), Postives = 184/228 (80.70%), Query Frame = 1
Query:    1 SQQDKYVFPPAGAGGRLPTPSHKLNRTFKFRDYAPKVFKNLRGIFGIDEASYMNSVAGDYDYLELITNSKSGSFFFYSHDQKYIIKNMKRAEAKFFRSILPQYYEHHRTHPDSVLIRFCGMYLVKKGHRKIPFIVMKCIDGTAQMKIHKKYDLKGSKVHRTAKEGEKVLKDNNLREAKTKFRLGSQRDAFLKVVRSDAEFLRDVNVMDYSMFVSVHDASRPPERTLQR 684
            SQ DKY FPPAGA GR+ TPSHKLN+TFKFRDYAPK FK LR  FGI+E++YM SVAG+YDYLELITNSKSGSFFFYSHDQKYIIK MKRAEAKFFR ILP+YY HH  HP S LIRFCGMYLVK GH+KIPFIVMKC++G     IH KYDLKGS + R+AKEGEKVLKDN+L     K  LGSQ+ AF++  ++DAEFL  VNVMDYSM   +HD+SRPP+    R
Sbjct:  241 SQVDKYTFPPAGATGRMATPSHKLNKTFKFRDYAPKAFKKLRQHFGIEESAYMLSVAGNYDYLELITNSKSGSFFFYSHDQKYIIKAMKRAEAKFFRKILPKYYAHHLAHPGSFLIRFCGMYLVKNGHKKIPFIVMKCVEGDTNKTIHSKYDLKGSSLGRSAKEGEKVLKDNDLDVKYGKIHLGSQKAAFVEAAKADAEFLCSVNVMDYSMLTCIHDSSRPPDEEAVR 468          
BLAST of mRNA_Ecto-sp13_S_contig19911.6478.1 vs. uniprot
Match: A0A6H5KVE7_9PHAE (PIPK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVE7_9PHAE)

HSP 1 Score: 306 bits (783), Expect = 1.180e-100
Identity = 152/217 (70.05%), Postives = 174/217 (80.18%), Query Frame = 1
Query:   49 LPTPSHKLNRTFKFRDYAPKVFKNLRGIFGIDEASYMNSVAGDYDYLELITNSKSGSFFFYSHDQKYIIKNMKRAEAKFFRSILPQYYEHHRTHPDSVLIRFCGMYLVKKGHRKIPFIVMKCIDGTAQMKIHKKYDLKGSKVHRTAKEGEKVLKDNNLREAKTKFRLGSQRDAFLKVVRSDAEFLRDVNVMDYSMFVSVHDASRPP-ERTLQRGYTE 696
            + TPSHKLN+TFKFRDYAPK FK LR  FGI+E++YM SVAG+YDYLELITNSKSGSFFFYSHDQKYIIK MKRAEAKF R ILP+YY HH  HP S LIRFCGMYLVK GH+KIPFIVMKC++G     IH KYDLKGS + R+AKEGEKVLKDN+L     K  LGSQ+ AF++  ++DAEFL  VNVMDYSM   +HD+SRPP E  ++R  TE
Sbjct:    1 MATPSHKLNKTFKFRDYAPKAFKKLRQHFGIEESAYMLSVAGNYDYLELITNSKSGSFFFYSHDQKYIIKAMKRAEAKFLRKILPKYYAHHLAHPGSFLIRFCGMYLVKNGHKKIPFIVMKCVEGDTNKTIHSKYDLKGSSLGRSAKEGEKVLKDNDLDVKYGKIHLGSQKAAFVEAAKADAEFLCSVNVMDYSMLTCIHDSSRPPDEEAVRRDSTE 217          
BLAST of mRNA_Ecto-sp13_S_contig19911.6478.1 vs. uniprot
Match: A0A6H5KUU1_9PHAE (PIPK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUU1_9PHAE)

HSP 1 Score: 257 bits (656), Expect = 3.200e-75
Identity = 131/226 (57.96%), Postives = 167/226 (73.89%), Query Frame = 1
Query:   10 DKYVFPPAGAGGRLPTPSHKLNRTFKFRDYAPKVFKNLRGIFGIDEASYMNSVAGDYDYLELITNSKSGSFFFYSHDQKYIIKNMKRAEAKFFRSILPQYYEHHRTHPDSVLIRFCGMYLVKKGH--RKIPFIVMKCIDGTAQMKIHKKYDLKGSKVHRTAKEGEKVLKDNNLREAKTKFRLGSQRDAFLK---VVRSDAEFLRDVNVMDYSMFVSVHD-ASRPPE 669
            DKY FPP+GA G L TPSHKL RTFKF+DYAPKVFK +R  FG+D+  YM SVAG+Y++LE I+N+KSG FFF+SHD++++IK MK +E KF R ILP YYEH + HP++ L+RF GMY VK  H  +K+ FIVM  +  T + +IH  YDLKGS + R AK GEKVLKDN+L E + K  LGSQR+AFLK   V R DAEFL  + +MDYS+   +HD  ++PP+
Sbjct:  773 DKYTFPPSGATGYLVTPSHKLGRTFKFKDYAPKVFKKIREHFGVDKMRYMLSVAGNYNFLEFISNAKSGEFFFFSHDERFMIKTMKSSETKFLRRILPHYYEHVKVHPETFLVRFYGMYRVKMHHLNKKVHFIVMNSVLDTYK-EIHNTYDLKGSSLGRDAKPGEKVLKDNDLAERQGKLHLGSQREAFLKAREVARGDAEFLARMKIMDYSLLTGIHDRTAKPPD 997          
BLAST of mRNA_Ecto-sp13_S_contig19911.6478.1 vs. uniprot
Match: A0A7S2RMD3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RMD3_9STRA)

HSP 1 Score: 200 bits (508), Expect = 5.410e-59
Identity = 109/226 (48.23%), Postives = 152/226 (67.26%), Query Frame = 1
Query:    1 SQQDKYVFPPAGAG--GRLPTPSHKLNRTFKFRDYAPKVFKNLRGIFGIDEASYMNSVAGDYDYLELITNSKSGSFFFYSHDQKYIIKNMKRAEAKFFRSILPQYYEHHRTHPDSVLIRFCGMYLVKKGH--RKIPFIVMKCIDGTAQMKIHKKYDLKGSKVHRTA----KEGEKVLKDNNLREAKTKFRLGSQR-DAFLKVVRSDAEFLRDVNVMDYSMFVSVHD 651
            ++ DKY+FPP G+   GR+ TP H L  TFKF+DYAPKVFK++R ++ +D ASYM SV GD+++++ I NS+SG FFFYSHD  Y+IK   + E KF R ILP YY++   +P+S++ RF GM+ VK  H  RK+ F+VM+ +  TA+ KIH  YDLKGS   R A    +E   VLKD +L      F+LG +R D F   + +DA+FL ++ +MDYS+ V +HD
Sbjct:  147 NRADKYIFPPRGSNRNGRI-TPPHSLQHTFKFKDYAPKVFKSIREMYNVDAASYMLSVCGDFNFIQFIANSRSGQFFFYSHDGSYMIKTQTKEENKFLRRILPSYYKYLSQNPNSLITRFYGMHRVKMYHLRRKVHFVVMQSVFDTAE-KIHTMYDLKGSTHGRQASIKDRETGGVLKDLDLVSDAKMFKLGPKRADLFRAQMEADAKFLSEMKIMDYSLLVGIHD 370          
BLAST of mRNA_Ecto-sp13_S_contig19911.6478.1 vs. uniprot
Match: A0A836CAN4_9STRA (PIPK domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAN4_9STRA)

HSP 1 Score: 208 bits (529), Expect = 2.950e-58
Identity = 115/246 (46.75%), Postives = 146/246 (59.35%), Query Frame = 1
Query:    4 QQDKYVFPPAGAGGRLPTPSHKLNRTFKFRDYAPKVFKNLRGIFGIDEA----------------------SYMNSVAGDYDYLELITNSKSGSFFFYSHDQKYIIKNMKRAEAKFFRSILPQYYEHHRTHPDSVLIRFCGMYLVKKGH--RKIPFIVMKCIDGTAQMKIHKKYDLKGSKVHRTAKEGEKVLKDNNLREAKTKFRLGSQRDAFLKVVRSDAEFLRDVNVMDYSMFVSVHDASRPPE 669
            Q DKYVFPP+GA G + TP HKL  TFKF+DYAPKV K +   FG D                         YM SVAG+Y +LE ITN++SG FFFYSHD+ ++IK MK+AE +F R ILP YYEH R HPD+ L+RFCGMY VK  H  RK+ F+VM                   S V+ T K+   V KD +L  +  K  LG QR+AFLKV+ +D  FL  + +MDYS+ + +HD +RPP+
Sbjct:  398 QVDKYVFPPSGAMGVMVTPPHKLGHTFKFKDYAPKVSKRVHEHFGRDRVLSAXXXXXXXXXXXXXXXXXXMRYMLSVAGNYQFLEFITNARSGQFFFYSHDESFMIKTMKKAETRFLRRILPHYYEHIRRHPDTFLVRFCGMYRVKMHHINRKVHFMVM-------------------SSVYDTHKD---VGKDLDLVRSGNKLHLGRQREAFLKVIENDVAFLAKMKIMDYSLLLGIHDRTRPPD 621          
BLAST of mRNA_Ecto-sp13_S_contig19911.6478.1 vs. uniprot
Match: A0A7R9YC01_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YC01_9STRA)

HSP 1 Score: 204 bits (518), Expect = 9.360e-58
Identity = 113/228 (49.56%), Postives = 150/228 (65.79%), Query Frame = 1
Query:   10 DKYVFPPAGA-GGRLPTPSHKLNRTFKFRDYAPKVFKNLRGIFGIDEASYMNSVAGDYDYLELITNSKSGSFFFYSHDQKYIIKNMKRAEAKFFRSILPQYYEHHRTHPDSVLIRFCGMYLVKKGH--RKIPFIVMKCIDGTAQMKIHKKYDLKGSKVHRTAKEGEK----VLKDNNLREAKTKFRLGSQRDAFLKVVRSDAEFLRDVNVMDYSMFVSVHDAS-RPPE 669
            DKYVFPP G   G LPTP H L  TFKF+DY+P VF+ +R +  I++ SYM SV G+ +++E I NSKSG FFFYSHD KY+IK     E KF R ILP YY H R++PDS++ RF GM+ VK  H  RK+ F+VM  +  T + +IH  YDLKGS+V R A   E+    VLKDN+L     K  LG ++  FL ++R D  FL+++ +MDYS+ + +HD + R PE
Sbjct:  128 DKYVFPPNGVLRGPLPTPPHNLAHTFKFKDYSPLVFRAIRELSNIEDDSYMLSVCGNRNFIEFIPNSKSGQFFFYSHDGKYMIKTQTSEENKFLRRILPHYYAHLRSNPDSLMTRFYGMHRVKMYHLRRKVHFVVMGSVFNTTE-RIHTIYDLKGSRVGREATAEERKNGGVLKDNDLVADGKKIVLGPKKARFLDILRRDVTFLQEMQIMDYSLLLGIHDKTKRVPE 354          
BLAST of mRNA_Ecto-sp13_S_contig19911.6478.1 vs. uniprot
Match: A0A4D9DCS9_9STRA (PIPK domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DCS9_9STRA)

HSP 1 Score: 203 bits (517), Expect = 1.390e-57
Identity = 110/232 (47.41%), Postives = 157/232 (67.67%), Query Frame = 1
Query:    4 QQDKYVFPPAGAGGRLP--TPSHKLNRTFKFRDYAPKVFKNLRGIFGIDEASYMNSVAGDYDYLELITNSKSGSFFFYSHDQKYIIKNMKRAEAKFFRSILPQYYEHHRTHPDSVLIRFCGMYLVKKGH--RKIPFIVMKCIDGTAQMKIHKKYDLKGSKVHRTA------KEGEKVLKDNNLREAKTKFRLGSQRDAFLKVVRSDAEFLRDVNVMDYSMFVSVHDASRPPE 669
            Q DKY+FPP G   + P  TP H L+  FKF+DYAPK+F  +R +FG+D ASYM SV+G+Y+YLE ++NSKSG FFFYSHD +++IK     E KF R ILP YY++   +P+++L RF GM+ VK  H  RK+ F++M  +  T + KI++ YDLKGS V R++      KEG  V KD +L +  TKF+LG++R  F++ +  DA FL  +N+MDYS+ + ++D +R  E
Sbjct:  238 QVDKYLFPPKGCN-KPPHRTPPHHLSHDFKFKDYAPKIFHRIRQLFGVDSASYMLSVSGNYNYLEFMSNSKSGQFFFYSHDGRFMIKTQTSEENKFLRKILPHYYQYVSLNPNTLLTRFYGMHRVKMRHLKRKVHFVIMHSVFDTKE-KIYRIYDLKGSTVGRSSGPDKARKEGV-VYKDLDLVDDHTKFQLGTKRRLFMEQLERDASFLASLNIMDYSLLIGIYDKTRRDE 466          
BLAST of mRNA_Ecto-sp13_S_contig19911.6478.1 vs. uniprot
Match: A0A7S1XT07_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XT07_9STRA)

HSP 1 Score: 190 bits (482), Expect = 3.600e-54
Identity = 102/222 (45.95%), Postives = 144/222 (64.86%), Query Frame = 1
Query:   10 DKYVFPPAGAGGRLP--TPSHKLNRTFKFRDYAPKVFKNLRGIFGIDEASYMNSVAGDYDYLELITNSKSGSFFFYSHDQKYIIKNMKRAEAKFFRSILPQYYEHHRTHPDSVLIRFCGMYLVKKGH--RKIPFIVMKCIDGTAQMKIHKKYDLKGSKVHRTAKEGE----KVLKDNNLREAKTKFRLGSQRDAFLKVVRSDAEFLRDVNVMDYSMFVSVHD 651
            DK +FPP G   R P  TP HKL+  FKF+DY+PK+F+ +R  FGIDE+ YM S+AGD++++E I NS SG FFFYSHD +Y+IK M++AE K  R +LP YY H +    +++ RF GM+ VK  H  + + F++M  +  T  + IH  YDLKGS V R   E E    KV KD +L + + + +LG  R+ F++ V  D++FL   N+MDYS+ V VH+
Sbjct:  143 DKLLFPPEG-NTRPPFITPPHKLHTAFKFKDYSPKIFRAIRKHFGIDESDYMLSLAGDFNFIEFIANSHSGQFFFYSHDGRYMIKTMEKAECKLLRDLLPDYYNHIKNQRQTLMTRFYGMHRVKMRHISKVMHFVIMGSVFHTG-LPIHVSYDLKGSTVGRMVSEEERAKGKVRKDQDLLKDERRLQLGPMRETFIEQVERDSQFLARHNIMDYSLLVGVHN 362          
BLAST of mRNA_Ecto-sp13_S_contig19911.6478.1 vs. uniprot
Match: A0A2R5G8D5_9STRA (Phosphatidylinositol 4-phosphate 5-kinase 4 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G8D5_9STRA)

HSP 1 Score: 190 bits (482), Expect = 7.210e-54
Identity = 98/222 (44.14%), Postives = 141/222 (63.51%), Query Frame = 1
Query:   10 DKYVFPPAGAGGRLPTPSHKLNRTFKFRDYAPKVFKNLRGIFGIDEASYMNSVAGDYDYLELITNSKSGSFFFYSHDQKYIIKNMKRAEAKFFRSILPQYYEHHRTHPDSVLIRFCGMYLVKKGHRK--IPFIVMKCIDGTA-QMKIHKKYDLKGSKVHRTAKEGEKVLKDNNLREAKTKFRLGSQRDAFLKVVRSDAEFLRDVNVMDYSMFVSVHDASRPP 666
            D+ VF P G+     TP+H L   F F+DY+ +VF+ LR  F ID+A Y+ S+A  Y+Y+E +TNSKSG FFFYS+D  Y+IK   + E+KF R +LPQYY +   + DS+L+R CGM+ +K  H +  + F+++K + G A   +IH  YDLKGS V R AK  E V KD +L      F+LG ++ AF+  +  DA FL D+++MDYS+ V +H+    P
Sbjct:  119 DRIVFNPEGSAL---TPAHNLPSRFLFKDYSQEVFRRLRARFSIDDADYLLSLASSYNYIEFVTNSKSGQFFFYSNDGHYLIKTQTKGESKFLRQVLPQYYMYMMENEDSLLVRICGMHRIKLSHMRHSLHFVILKSVYGNAASRRIHTLYDLKGSTVGRAAKRHEAVYKDLDLINNGQTFKLGPKKAAFMAQLEKDANFLADLHIMDYSLLVGIHNKLAEP 337          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19911.6478.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JMY7_9PHAE2.180e-16197.42PIPK domain-containing protein n=2 Tax=Ectocarpus ... [more]
D8LLT5_ECTSI6.100e-10871.49PIPK domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KVE7_9PHAE1.180e-10070.05PIPK domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KUU1_9PHAE3.200e-7557.96PIPK domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S2RMD3_9STRA5.410e-5948.23Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A836CAN4_9STRA2.950e-5846.75PIPK domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7R9YC01_9STRA9.360e-5849.56Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A4D9DCS9_9STRA1.390e-5747.41PIPK domain-containing protein n=1 Tax=Nannochloro... [more]
A0A7S1XT07_9STRA3.600e-5445.95Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A2R5G8D5_9STRA7.210e-5444.14Phosphatidylinositol 4-phosphate 5-kinase 4 n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19911contigEcto-sp13_S_contig19911:116..2425 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score467.6
Seed ortholog evalue3.4e-129
Seed eggNOG ortholog2880.D7FGS6
Model size702
KEGG rclassRC00002,RC00078
KEGG koko:K00889
KEGG ReactionR03469
KEGG Pathwayko00562,ko01100,ko04011,ko04070,ko04072,ko04139,ko04144,ko04666,ko04810,ko05231,map00562,map01100,map04011,map04070,map04072,map04139,map04144,map04666,map04810,map05231
KEGG ModuleM00130
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.Translation initiation factor IF-2, N-terminal region
EggNOG OGsCOG5253@1,KOG0229@2759
EC2.7.1.68
Cds size702
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463003.9217587-CDS-Ecto-sp13_S_contig19911:115..2411681463003.9217587-CDS-Ecto-sp13_S_contig19911:115..241Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19911 116..241 -
1681463003.9338965-CDS-Ecto-sp13_S_contig19911:568..7311681463003.9338965-CDS-Ecto-sp13_S_contig19911:568..731Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19911 569..731 -
1681463003.9432385-CDS-Ecto-sp13_S_contig19911:1531..16771681463003.9432385-CDS-Ecto-sp13_S_contig19911:1531..1677Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19911 1532..1677 -
1681463003.9522493-CDS-Ecto-sp13_S_contig19911:1968..20881681463003.9522493-CDS-Ecto-sp13_S_contig19911:1968..2088Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19911 1969..2088 -
1681463003.9616492-CDS-Ecto-sp13_S_contig19911:2278..24251681463003.9616492-CDS-Ecto-sp13_S_contig19911:2278..2425Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19911 2279..2425 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19911.6478.1prot_Ecto-sp13_S_contig19911.6478.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19911 116..2425 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19911.6478.1

>prot_Ecto-sp13_S_contig19911.6478.1 ID=prot_Ecto-sp13_S_contig19911.6478.1|Name=mRNA_Ecto-sp13_S_contig19911.6478.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=234bp
SQQDKYVFPPAGAGGRLPTPSHKLNRTFKFRDYAPKVFKNLRGIFGIDEA
SYMNSVAGDYDYLELITNSKSGSFFFYSHDQKYIIKNMKRAEAKFFRSIL
PQYYEHHRTHPDSVLIRFCGMYLVKKGHRKIPFIVMKCIDGTAQMKIHKK
YDLKGSKVHRTAKEGEKVLKDNNLREAKTKFRLGSQRDAFLKVVRSDAEF
LRDVNVMDYSMFVSVHDASRPPERTLQRGYTEL*
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mRNA from alignment at Ecto-sp13_S_contig19911:116..2425-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19911.6478.1 ID=mRNA_Ecto-sp13_S_contig19911.6478.1|Name=mRNA_Ecto-sp13_S_contig19911.6478.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2310bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19911:116..2425- (Ectocarpus species13 EcNAP12_S_4_19m)
TCCCAGCAAGACAAGTACGTCTTTCCTCCGGCGGGGGCGGGGGGGCGCCT GCCCACGCCTTCCCACAAGCTCAACAGGACCTTCAAGTTCCGAGACTACG CGCCGAAGGTCTTCAAGAACCTCCGGGGTATCTTCGGCATCGATGAGGTG GGCCTGCCGCTGTCGCTAGTATTGCCGCTGTTGCTGCTGATGCTGCCGTT GTCGTCGCTGCTACCTTTGAAGCTATTCTTTTACAATGATGTGCGATGTT ATCGCCATGATGTGTGTTATTTGGCGCCATGGCGAACTAATCCTTCCCAA TCCCCCGGCTCTCCCTTCAAATGGCTTTTTTCTCCAGGCATCGTACATGA ACTCCGTCGCCGGTGACTACGACTACTTGGAACTCATCACGAACTCCAAG TCTGGCAGCTTCTTCTTCTACTCCCACGATCAGAAGTACATCATCAAGAA CATGAAGGTTAGCTAATCGATTCCACAGGCGATCCGTTGCACGTAGTCGC CAGAGAAATCAAACACACGACGCTAGTAGTATGGCATCAGGAGCATGTGC TCTGACGCTGTCCAGAGGAAACTAATACGCCTGGACTTCGACGCTCATAA ATCAGCGCGCTTTCTCCCAAAATCTGCTATTAAACTGCTGTTGCGCTGCT GATGCGGCTTCTTACTACTGTGACTTTGCTGCAACTGCTCCTGGTGCTGC CACTGATGCTGCTGCCTACCTGCTATTGTGTTGCTACTGCTGGTGCAGCG AGCGGAGGCGAAGTTCTTCCGGAGCATCCTGCCGCAGTACTACGAGCACC ACCGCACCCACCCAGACTCCGTGCTGATCCGGTTCTGCGGCATGTACCTC GTGAAGAAGGGTCACAGGAAGATACCCTTCATCGTCATGAAGTGGTGCGT CGTTTGTTCTTTCGTTCGTTACACCTCTCCAGGAGGAGACACAAGAACAA AAGTGTCCTGCATCGACACAAAGTCGTGCGCGTTGTTTTTCTTAGTTCAT TTCCGAACCGATTATTGGGCGCAAGAGTGTGAGCCTCTTTCGCCATGAAA TGGTGCTACTTACTGCTTCTCGCGAGGAGGAGGCACAGGAAAGGTACAGC AGAAGCGCTCTCTGTAGGTTGCAAGGCGGCATAGAGTGCCAACGGATTTG GCCAGCTTCCCGCCGAACACCTAACTCTATTCAGGATGTGAGACGCGCTT GAAAAAATCTGCCCGTGTCGCGCGACTTCACGGACCTAGTATGATTCAGG GAACACTACTGTACCCTTGTACGGTCATGAACCACTCTCATGAACATACA TTGTGTTTACTCTTGACCCTCGTGGACAAGGAATGTGATGCGGTCACCCT TTTGTTGAAGTCCACACCACCCATCAAAGCGCAGCGTTCCTCTCCTTGCT CGAAGGCATGTCCTCCTCCCGCCCCATTTCGCGCCGCACCGTATGCCTTA TTTCGTCCTCCGTTCATCTCTTCTTGCTAGCTTTGATGGATAGGCATCAT TGATGGAAGTTCATGATCACACGCGCCCCCCTCTACTTCCTCTTCCCTCC ACCGCCCGTCCTCATTCTTTTCCACGCCATGTTTGCATTGGTGTCGGGAA CTGCCCAGATGAAGATAGATAGACCCGCACAATCTTCCAGCTCTTGCAAC GCACACCGCTAACTCCCCGCTTGTTTCTCCGGTTTCGTTCGCAGCATTGA CGGCACTGCCCAGATGAAAATCCACAAGAAGTACGACCTTAAGGGCTCCA AAGTCCACCGGACCGCAAAGGAGGGAGAGAAGGTCTTGAAGGACAACAAC TTGAGAGAAGCAAAGACCAAGTTCCGGCTTGGCTCGCAAAGGGACGCCTT CCTCAAGGTGATCACCCTACGGCTGGACAATTGGGGTGATCGGGGTGTCT GTTGATACCTCGACACTATGGTCGAAGGTATTGACCAAAGTTGTGTTGCA ATGGGAGTAATTTCAAACCATCGCCCCTTTCTGTTCTGCGCATTGTCTTT TGTATAGTCTTTTATCCCCGTTTGTCACTGTCATTGCTGGTCTCGTCTGC CCCACGCGCCCCTCTGACTCATATAGTCTCATATCCCCATGTGTCGCTCT CGTTGCTGGTTTCCTCTGCCCTGCGCGCGCGCGCCTCTGACGAAACCATT TCGGCCCGCACCGCGGAACGTGGCGCATCTGCAGGTGGTGCGGTCAGATG CGGAGTTCTTGCGCGACGTTAATGTGATGGACTACTCCATGTTCGTCTCC GTCCACGACGCCTCCCGCCCACCGGAGCGAACCCTTCAACGTGGCTATAC GGAGTTGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19911:116..2425-

>mRNA_Ecto-sp13_S_contig19911.6478.1 ID=mRNA_Ecto-sp13_S_contig19911.6478.1|Name=mRNA_Ecto-sp13_S_contig19911.6478.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=702bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19911:116..2425- (Ectocarpus species13 EcNAP12_S_4_19m)
TCCCAGCAAGACAAGTACGTCTTTCCTCCGGCGGGGGCGGGGGGGCGCCT
GCCCACGCCTTCCCACAAGCTCAACAGGACCTTCAAGTTCCGAGACTACG
CGCCGAAGGTCTTCAAGAACCTCCGGGGTATCTTCGGCATCGATGAGGCA
TCGTACATGAACTCCGTCGCCGGTGACTACGACTACTTGGAACTCATCAC
GAACTCCAAGTCTGGCAGCTTCTTCTTCTACTCCCACGATCAGAAGTACA
TCATCAAGAACATGAAGCGAGCGGAGGCGAAGTTCTTCCGGAGCATCCTG
CCGCAGTACTACGAGCACCACCGCACCCACCCAGACTCCGTGCTGATCCG
GTTCTGCGGCATGTACCTCGTGAAGAAGGGTCACAGGAAGATACCCTTCA
TCGTCATGAAGTGCATTGACGGCACTGCCCAGATGAAAATCCACAAGAAG
TACGACCTTAAGGGCTCCAAAGTCCACCGGACCGCAAAGGAGGGAGAGAA
GGTCTTGAAGGACAACAACTTGAGAGAAGCAAAGACCAAGTTCCGGCTTG
GCTCGCAAAGGGACGCCTTCCTCAAGGTGGTGCGGTCAGATGCGGAGTTC
TTGCGCGACGTTAATGTGATGGACTACTCCATGTTCGTCTCCGTCCACGA
CGCCTCCCGCCCACCGGAGCGAACCCTTCAACGTGGCTATACGGAGTTGT
GA
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