mRNA_Ecto-sp13_S_contig1989.6462.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1989.6462.1
Unique NamemRNA_Ecto-sp13_S_contig1989.6462.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1989.6462.1 vs. uniprot
Match: D8LLV0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLV0_ECTSI)

HSP 1 Score: 433 bits (1113), Expect = 1.620e-151
Identity = 223/280 (79.64%), Postives = 225/280 (80.36%), Query Frame = 1 
Query:    1 MAWVSDESEPLPLKLSPSLGFNNLTSSVSTFAYIHKGDVLIYGLDGVLRQTLVNDGGVRAMEVLLCSGEDFDFLVVALNTGVQIWSSDGRRLIYVFDAKTAPGSSTVDDGGNFTQGIAMVPRGRNFIVGCSDGDVFAFQAKTGPQGEACELTATLRGHCQPITCATADLECCVSGDAGGTVIVWSIAKHLERECSFDGDGTPATALCARDGSVVASYSTGHLRVFDTRRKTLAIEIAAHSRTINAMDLHPSSMLLATVGEDLFLNVWELPECGQEGPSGQ 840
            MAWVSDES+PLPLKLSPSLGFNNLTSSVSTFAYIHKGDVLIYGLDGVLRQTLVNDGGVRAME                     IWSSDGRRLIY FDAK APGSSTVDDGGNFTQGIAMVPRGRNFIVGCSDGDVFAFQAKTGPQGEACELTATLRGHCQPITCA AD ECCVSGDAGGTVIVWSIAKHLERECSFDGDGT                              LAIEIAAHSRTINAMDLHPSSMLLATVGEDLFLNVWELP+CGQEGPSGQ
Sbjct:    1 MAWVSDESKPLPLKLSPSLGFNNLTSSVSTFAYIHKGDVLIYGLDGVLRQTLVNDGGVRAME---------------------IWSSDGRRLIYFFDAKAAPGSSTVDDGGNFTQGIAMVPRGRNFIVGCSDGDVFAFQAKTGPQGEACELTATLRGHCQPITCAAADSECCVSGDAGGTVIVWSIAKHLERECSFDGDGT------------------------------LAIEIAAHSRTINAMDLHPSSMLLATVGEDLFLNVWELPKCGQEGPSGQ 229
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BLAST of mRNA_Ecto-sp13_S_contig1989.6462.1 vs. uniprot
Match: UPI00106D036C (WD repeat-containing protein 54-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106D036C)

HSP 1 Score: 120 bits (301), Expect = 1.750e-28
Identity = 84/273 (30.77%), Postives = 130/273 (47.62%), Query Frame = 1 
Query:   31 LPLKLSPSLGFNNLTSSVS---TFAYIHKGDVLIY-----GLDGVLRQTLVND----GGVRAMEVLLCSGEDFDFLVVALNTGVQIWSSDGRRLIYVFDAKTAPGSSTVDDGGNFTQGIAMVPRGRNFIVGCSDGDVFAFQAKTGPQGEACELTATLRGHCQPITCATADLECCVSGDAGGTVIVWSIAKHLERECSFDGDGTPATALCARDGSVVASYSTGHLRVFDTRRKTLAIEIAAHSRTINAMDLHPSSMLLATVGEDLFLNVWELPE 813
            + LK +PS+  NN+ ++ +   ++A +HK  V +      G   V +Q         G V  M+   C     D LV+A   GVQ++  DG   I +F    +           F +GI      +   +G   G +  F   +  QG    L  TL  H   IT   +  +  VS D  G ++VW   + +++     G GTP T+L   +G ++A+YS+GH+R++D     L IEI AHSR IN++D+   S LL +V ED F+ VW LP+
Sbjct:    8 MALKGTPSMLPNNMATNKTKHLSYAVVHKSVVCVNTIVAAGSSPVQKQIACKGDGSAGNVTVMQAKWCHVSGRDILVIASAKGVQMYEQDGS--IMIFWHSVSQQQLENKSFSYFARGICSTLN-KYLCIGTCTGSILVFDIPS--QGTTITLHKTLDHHNVGITDLASVKDKLVSADEDGNIVVWQCDQTMKKITEIRGSGTPCTSLALWNGFILAAYSSGHIRIYDLALGILKIEICAHSRCINSLDIASESCLLLSVSEDSFVRVWALPK 275
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BLAST of mRNA_Ecto-sp13_S_contig1989.6462.1 vs. uniprot
Match: C3Y3W9_BRAFL (Uncharacterized protein n=4 Tax=Branchiostoma TaxID=7737 RepID=C3Y3W9_BRAFL)

HSP 1 Score: 115 bits (289), Expect = 8.340e-27
Identity = 83/275 (30.18%), Postives = 133/275 (48.36%), Query Frame = 1 
Query:   19 ESEPLPLKLSPSLGFNNLT------SSVSTFAYIHKGDVLIYGLDGVLRQTLVNDGGVRAMEVLLCSGEDFDFLVVALNTGVQIWSSDGRRLIY---VFDAKTAPGSSTVDDGGNFTQGIAMVPRGRNFIVGCSDGDVFAFQAKTGPQGEACELTATLRGHCQPITCATADL---ECCVSGDAGGTVIVWSIAKHLERECSFDGDGTPATALCARDGSVVASYSTGHLRVFDTRRKTLAIEIAAHSRTINAMDLHPSSMLLATVGEDLFLNVWEL 807
            +S+ +PL+ S S   NNL        +++T A +H+  V +  + G +  T          +   C     + LV+    GVQI+  DG  +++   +  A++  G ST      F +G+A V  G    VG S G+V  F     P+G    LT T++GH   IT  T+     +  V+ D  G +IVW   K +E      G   PA  +C    +V+A+YSTGH+R+F      +  E+ AH+R I+++D+ P S LL +  ED +  +W+L
Sbjct:    4 KSKTIPLRGSASALCNNLALNRIPEKNLTTHAVVHRSAVNLVTVSGPV--TGEGQQNFHHRQAKWCQLATRNLLVITSQKGVQIFEQDGAIMVFWHALGAAESVSGYST------FARGVAPVA-GNLICVGTSSGNVLCFNIP--PKGPNVTLTETMKGHSSAITDITSTGHTGDTVVTADDSGNIIVWKGPKFVE-VTRISGSRNPACCVCLWKDTVIAAYSTGHIRLFGAETGNIHAEVCAHARWISSLDMLPESGLLISASEDSYARIWQL 266
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BLAST of mRNA_Ecto-sp13_S_contig1989.6462.1 vs. uniprot
Match: A0A7M5UFF3_9CNID (Uncharacterized protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5UFF3_9CNID)

HSP 1 Score: 114 bits (284), Expect = 4.550e-26
Identity = 75/275 (27.27%), Postives = 132/275 (48.00%), Query Frame = 1 
Query:   37 LKLSPSLGFNNL----TSSVSTFAYIHKGDVLIYGLDGV------LRQTLVNDGGVRAMEVLL----CSGEDFDFLVVALNTGVQIWSSDGRRLIYVFDAKTAPGSSTVDDGGNFTQGIAMVPRGRNFIVGCSDGDVFAFQAKTGPQGEACELTATLRGHCQPITCATADL----ECCVSGDAGGTVIVWSIAKHLERECSFDGDGTPATALCARDGSVVASYSTGHLRVFDTRRKTLAIEIAAHSRTINAMDLHPSSMLLATVGEDLFLNVWEL 807
            +K S SL +NNL    ++S   +A +HK +V ++  + +       R+ +    G +    ++    C       LVV    G Q++  +G  +I+    +  P          F +GI      R   +G +DG ++ F   +  +G   +L  T+  H    TCA  DL    +C VS D  G +I+W +   + +    +G G P T++   +  ++A+Y +GHLR F+ +  T+ +E+AAH++ INAMDL     L+ T  ED FL ++++
Sbjct:    9 IKSSASLLYNNLDVLSSASGLQYAVVHKSNVWVFDAEEIQTNQAAYRRVVCKGEGTQTSSTIMQAKWCVLPQRTLLVVGSVKGAQMFDENGSMMIFWQALQPHPKEGKPQ----FVRGITAAGDNR-ICIGTADGSIYVFDIPS--KGNGVKLHDTINAH----TCALTDLHALDDCMVSADDMGKIILWKVGGAVTKTLEIEGFGFPCTSVRLHENFIIAAYGSGHLRKFNCKTGTIIVEVAAHAKWINAMDLSQDGTLVVTASEDTFLRLFDV 272
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BLAST of mRNA_Ecto-sp13_S_contig1989.6462.1 vs. uniprot
Match: A7S438_NEMVE (Predicted protein n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7S438_NEMVE)

HSP 1 Score: 109 bits (273), Expect = 1.920e-24
Identity = 83/273 (30.40%), Postives = 123/273 (45.05%), Query Frame = 1 
Query:   28 PLPLKLSPSLGFNNLT------SSVSTFAYIHKGDVLIY----GLDGVLRQTLVNDGGVRAMEVLL----CSGEDFDFLVVALNTGVQIWSSDGRRLIYVFDAKTAPGSSTVDDGGNFTQGIAMVPRGRNFI-VGCSDGDVFAFQAKTGPQGEACELTATLRGHCQPITCATADLECCVSGDAGGTVIVWSIAKHLERECSFDGDGTPATALCARDGSVVASYSTGHLRVFDTRRKTLAIEIAAHSRTINAMDLHPSSMLLATVGEDLFLNVW 801
            P+ LK S S   NNL           T+A +HK  V +     G     RQ      G  +   +L    C   + + LV+A   GVQ++  DG  +++    ++ P     +    F++GI  V  G  +I VG SDG +  F      +G   +L  TL  H   I    +     VS D  G +I+W    H  +     G G P +++      V+  Y TGH+RVF+     L IE+ AH+R INA+D+ P + LL +V ED F+ VW
Sbjct:    7 PVNLKASASSLCNNLAIWPVKEKETITYAVVHKAFVCLTNVAKGSIPTQRQVSCKGEGAHSSSSVLQAKWCELPNRNVLVIASVKGVQMFDPDGSIMVFW---QSLPPCEATEVYSQFSRGICAV--GDKYICVGSSDGGIMVFDVPA--RGTGVKLQETLSSHNGAICDLVSHGGKMVSSDESGHMIIWQSGGHFTQLSQIKGFGNPCSSIALLRNLVIGGYGTGHIRVFNGATGKLLIEVCAHARWINALDVAPDAGLLLSVSEDTFVRVW 272
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BLAST of mRNA_Ecto-sp13_S_contig1989.6462.1 vs. uniprot
Match: A0A835YMF8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMF8_9STRA)

HSP 1 Score: 108 bits (270), Expect = 8.670e-24
Identity = 65/161 (40.37%), Postives = 89/161 (55.28%), Query Frame = 1 
Query:   88 TFAYIHKGDVLIYGLDGVLRQTLVNDG-GVRAMEVLLCSGEDFDFLVVALNTGVQIWSSDGRRLIYVFDAKTAPGSSTVDDGGNFT--QGIAMVPRGRNFIVGCSDGDVFAFQAKTGPQGEACELTATLRGHCQPITCATADLECCVSGDAGGTVIVWSIA 561
            T AYIHK +V+  G  G   + L   G   RA++      +  + LVVAL+TGVQ+WS++G RL+Y F  +     S V +GG     +GI+ V RG + +VGCSDGDVF F         A EL+ +LRGH +P+T   A      S D GG +I W +A
Sbjct:    8 TQAYIHKDEVITLGCGGAAPRALGRGGENGRALQARFVVADAQELLVVALSTGVQMWSANGTRLLYFFSLR-----SVVAEGGPAVSCRGISAVERGCHVLVGCSDGDVFVF---------AVELSRSLRGHTRPVTATAASRTIAASADMGGRIIAWRVA 154
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BLAST of mRNA_Ecto-sp13_S_contig1989.6462.1 vs. uniprot
Match: A0A7S2FDR9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FDR9_9STRA)

HSP 1 Score: 103 bits (256), Expect = 9.130e-23
Identity = 60/182 (32.97%), Postives = 94/182 (51.65%), Query Frame = 1 
Query:  307 GSSTVDDGGN----FTQGIAMVPRGRNFIVGCSDGDVFAFQAKTGPQGEACELTATLRGHCQPITCATADLECCVSGDAGGTVIVWSIAKHLERECSFDGDGTPATALCARDGS--VVASYSTGHLRVFDTRRKTLAIEIAAHSRTINAMDLHPSSMLLATVGEDLFLNVWELPECGQEGPS 834
            G   V D GN    F +G A+V   ++  VGCS+GD+  FQ           L  T++ H  PI+  T   +   SGD  G V +W+     +++  F G+G P T L   + +  +VA ++ G LR+     + + +E+AAHSR I A+D+HP+  +  TV ED ++ VW LP+   +  S
Sbjct:   13 GLKDVMDSGNSGMPFMRGAAVVDATQDVCVGCSNGDIAVFQMAANSNAR---LQRTVKCHEAPISTMTGGGDLVASGDDEGQVCLWN--AQFDQQAIFPGEGLPCTCLGMHNDADALVAGFAHGVLRIVQLSTREVTVEVAAHSRCIMALDVHPTQPIFTTVSEDTYMKVWALPDSEDKSAS 189
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BLAST of mRNA_Ecto-sp13_S_contig1989.6462.1 vs. uniprot
Match: UPI000719CF20 (WD repeat-containing protein 54-like isoform X2 n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719CF20)

HSP 1 Score: 104 bits (260), Expect = 1.210e-22
Identity = 77/291 (26.46%), Postives = 140/291 (48.11%), Query Frame = 1 
Query:   19 ESEPLPLKLSPSLGFNNLT------SSVSTFAYIHKG--DVLIYGLDG----VLRQTLVND----GGVRAMEVLLCSGEDFDFLVVALNTGVQIWSSDGRRLIYVFDAKTAPGSSTVDDGGNFTQGIAMVPRGRNFIVGCSDGDVFAFQAKTGPQGEACELTATLRGHCQPITCATADLECCVSGDAGGTVIVWSIAK-HLERECSFDGDGTPATALCARDGSVVASYSTGHLRVFDTRRKTLAIEIAAHSRTINAMDLHPSSMLLATVGEDLFLNVWELPECGQEGPSGQ 840
            + + L +K S S   +NL+          ++  +HK   +++    DG    + RQ +V +    G    M++  C   +   +V+A   G+QI+ SDG  ++Y + +   P S+ V     + +GI  + +     +G   G +  F+    P+G    L  +L+ H  PI+C  +      SGD  G +I+W + +  L      DG G+P + +   +  +VA+Y +GH+R+F      +  E+ AH+R INA+D+   + ++ TV ED F  +W+L E   + P G+
Sbjct:    4 KEKSLSMKGSTSALCHNLSVYTDNDKRTQSYGVVHKSVANIITIAADGANVLMQRQVIVKEPGGHGSTIVMQMKYCEFPERSLMVMACQRGIQIYESDGSVMLY-WHSLVNPESNEVSKA--YARGICTL-QDSMLCIGTDSGTILVFEIP--PKGTNILLKESLKEHVLPISCLHSHGLVLASGDDSGCIILWRVEESQLHPYKRIDGLGSPCSGVRLWNELLVATYGSGHIRLFKVISGHMCAEVTAHARWINAIDVVHRNGMVLTVSEDSFAKIWQLKE--GDAPEGK 286
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BLAST of mRNA_Ecto-sp13_S_contig1989.6462.1 vs. uniprot
Match: UPI000719EA49 (WD repeat-containing protein 54-like isoform X1 n=2 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719EA49)

HSP 1 Score: 104 bits (259), Expect = 2.010e-22
Identity = 75/282 (26.60%), Postives = 136/282 (48.23%), Query Frame = 1 
Query:   19 ESEPLPLKLSPSLGFNNLT------SSVSTFAYIHKG--DVLIYGLDG----VLRQTLVND----GGVRAMEVLLCSGEDFDFLVVALNTGVQIWSSDGRRLIYVFDAKTAPGSSTVDDGGNFTQGIAMVPRGRNFIVGCSDGDVFAFQAKTGPQGEACELTATLRGHCQPITCATADLECCVSGDAGGTVIVWSIAK-HLERECSFDGDGTPATALCARDGSVVASYSTGHLRVFDTRRKTLAIEIAAHSRTINAMDLHPSSMLLATVGEDLFLNVWELPE 813
            + + L +K S S   +NL+          ++  +HK   +++    DG    + RQ +V +    G    M++  C   +   +V+A   G+QI+ SDG  ++Y + +   P S+ V     + +GI  + +     +G   G +  F+    P+G    L  +L+ H  PI+C  +      SGD  G +I+W + +  L      DG G+P + +   +  +VA+Y +GH+R+F      +  E+ AH+R INA+D+   + ++ TV ED F  +W+L E
Sbjct:    4 KEKSLSMKGSTSALCHNLSVYTDNDKRTQSYGVVHKSVANIITIAADGANVLMQRQVIVKEPGGHGSTIVMQMKYCEFPERSLMVMACQRGIQIYESDGSVMLY-WHSLVNPESNEVSKA--YARGICTL-QDSMLCIGTDSGTILVFEIP--PKGTNILLKESLKEHVLPISCLHSHGLVLASGDDSGCIILWRVEESQLHPYKRIDGLGSPCSGVRLWNELLVATYGSGHIRLFKVISGHMCAEVTAHARWINAIDVVHRNGMVLTVSEDSFAKIWQLKE 279
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1989.6462.1 vs. uniprot
Match: A0A0G4F6I2_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F6I2_VITBC)

HSP 1 Score: 104 bits (260), Expect = 2.010e-22
Identity = 80/285 (28.07%), Postives = 126/285 (44.21%), Query Frame = 1 
Query:   28 PLPLKLSPSLGFNNLTSSVSTFAYIHKGDVLIYGLDGVLRQTLVNDGGVRAME-VLLCSGEDFDFLVVALNTGVQIWSSDGRRLIYVFDAK--------TAPGSSTVDDGGNFTQGIAMV--PRGRNFIVGCSDGDVFAFQAKTGPQGEACELTATLR-GHCQPITCATADLECC----VSGDAGGTVIVW---SIAKHLERECSFDGDGTPATALCARDGSVVASYSTGHLRVFDTRRKTLAIEIAAHSRTINAMDLHPSSMLLATVGEDLFLNVWELPECGQE 825
            P+ LK SPSL   NL +S    AY H+  V  Y +D            + ++  V +        L+V +  G Q+W+ DG R++Y    +        T+   +   D G   +G A+   P+  + I+G S G++   +      G+A    AT +     P+       E      +SG A G ++ W   +   +++   +        T +     ++   + TGHLRV+D  R+ L IEIAAH R IN +D+     L+A+VGED  LNVW  P C  E
Sbjct:   14 PVVLKASPSLIHGNLVASQRRIAYAHQSKVCFYAVDSERCVDGPTTSKIISLHYVHIRKAGPKPMLIVNMANGTQMWNQDGTRMLYYLPVQHPQTSATSTSAAQNAAVDIGKCHRGAAVCAFPQADHVIIGSSAGELIIIRT----DGDAFHSLATRKVASASPVMVVACSGEGSDQHVMSGHANGEIVWWRPEANGMYMQLPGALQHAQDTPTCMKVLGNTLYCGFGTGHLRVYDAVRRELKIEIAAHGRWINDIDVRHDG-LVASVGEDTVLNVWRCPSCDSE 293
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1989.6462.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLV0_ECTSI1.620e-15179.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI00106D036C1.750e-2830.77WD repeat-containing protein 54-like n=1 Tax=Dendr... [more]
C3Y3W9_BRAFL8.340e-2730.18Uncharacterized protein n=4 Tax=Branchiostoma TaxI... [more]
A0A7M5UFF3_9CNID4.550e-2627.27Uncharacterized protein n=1 Tax=Clytia hemisphaeri... [more]
A7S438_NEMVE1.920e-2430.40Predicted protein n=1 Tax=Nematostella vectensis T... [more]
A0A835YMF8_9STRA8.670e-2440.37Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2FDR9_9STRA9.130e-2332.97Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
UPI000719CF201.210e-2226.46WD repeat-containing protein 54-like isoform X2 n=... [more]
UPI000719EA492.010e-2226.60WD repeat-containing protein 54-like isoform X1 n=... [more]
A0A0G4F6I2_VITBC2.010e-2228.07Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1989contigEcto-sp13_S_contig1989:348..7155 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeMetazoa
Stop0
Start1
Seed ortholog score128.3
Seed ortholog evalue5.8e-27
Seed eggNOG ortholog7668.SPU_008043-tr
Preferred nameWDR54
Model size840
Hectar predicted targeting categoryother localisation
Exons10
EggNOG free text desc.WD repeat domain 54
EggNOG OGs28JFT@1,2QRUZ@2759,39TF6@33154,3B9FN@33208,3CVNI@33213
Ec32 ortholog descriptionWD40-repeat-containing domain
Ec32 orthologEc-14_001760.1
Cds size840
COG Functional cat.S
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1989.6462.1prot_Ecto-sp13_S_contig1989.6462.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1989 348..7155 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463002.6724885-CDS-Ecto-sp13_S_contig1989:347..4251681463002.6724885-CDS-Ecto-sp13_S_contig1989:347..425Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1989 348..425 -
1681463002.6848075-CDS-Ecto-sp13_S_contig1989:749..8221681463002.6848075-CDS-Ecto-sp13_S_contig1989:749..822Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1989 750..822 -
1681463002.6926033-CDS-Ecto-sp13_S_contig1989:1381..14711681463002.6926033-CDS-Ecto-sp13_S_contig1989:1381..1471Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1989 1382..1471 -
1681463002.7032766-CDS-Ecto-sp13_S_contig1989:1780..18491681463002.7032766-CDS-Ecto-sp13_S_contig1989:1780..1849Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1989 1781..1849 -
1681463002.7141337-CDS-Ecto-sp13_S_contig1989:2379..24861681463002.7141337-CDS-Ecto-sp13_S_contig1989:2379..2486Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1989 2380..2486 -
1681463002.7225094-CDS-Ecto-sp13_S_contig1989:2827..29051681463002.7225094-CDS-Ecto-sp13_S_contig1989:2827..2905Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1989 2828..2905 -
1681463002.7310479-CDS-Ecto-sp13_S_contig1989:3645..37411681463002.7310479-CDS-Ecto-sp13_S_contig1989:3645..3741Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1989 3646..3741 -
1681463002.7400897-CDS-Ecto-sp13_S_contig1989:4470..45331681463002.7400897-CDS-Ecto-sp13_S_contig1989:4470..4533Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1989 4471..4533 -
1681463002.7568645-CDS-Ecto-sp13_S_contig1989:6042..61351681463002.7568645-CDS-Ecto-sp13_S_contig1989:6042..6135Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1989 6043..6135 -
1681463002.7689657-CDS-Ecto-sp13_S_contig1989:7062..71551681463002.7689657-CDS-Ecto-sp13_S_contig1989:7062..7155Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1989 7063..7155 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1989.6462.1

>prot_Ecto-sp13_S_contig1989.6462.1 ID=prot_Ecto-sp13_S_contig1989.6462.1|Name=mRNA_Ecto-sp13_S_contig1989.6462.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=280bp
MAWVSDESEPLPLKLSPSLGFNNLTSSVSTFAYIHKGDVLIYGLDGVLRQ
TLVNDGGVRAMEVLLCSGEDFDFLVVALNTGVQIWSSDGRRLIYVFDAKT
APGSSTVDDGGNFTQGIAMVPRGRNFIVGCSDGDVFAFQAKTGPQGEACE
LTATLRGHCQPITCATADLECCVSGDAGGTVIVWSIAKHLERECSFDGDG
TPATALCARDGSVVASYSTGHLRVFDTRRKTLAIEIAAHSRTINAMDLHP
SSMLLATVGEDLFLNVWELPECGQEGPSGQ
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mRNA from alignment at Ecto-sp13_S_contig1989:348..7155-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1989.6462.1 ID=mRNA_Ecto-sp13_S_contig1989.6462.1|Name=mRNA_Ecto-sp13_S_contig1989.6462.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6808bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1989:348..7155- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTTGGGTCTCGGACGAAAGTGAGCCCCTCCCCCTCAAGCTCTCACC
TTCGCTGGGATTCAACAACCTGACGTCTAGCGTTTCCACCTTCGTGAGTA
CAGCACTGCATGCGCGCAATATCTTTGCTGGAGACCGTCAAAGATACATG
TCGGCAGCAAATGCTATAGACTATCCTGCTGCCTGTGTACGTGGATGGGT
CGGGATGCTATTCGCTCAACACACAGGCCTTACGGCCAGAAGAGATCAGA
TGTTAGGAAGACGGATACTCCACCGGGTGTGGTGACACAAGTGTGTGCAG
AGCAACGCATGTATGTGAGATAACACCCCCATCTTGCTAATGGAATGAAC
CCCATCAGCCGCGTTTCTCAAAGGTTCAAAACAAACAAACGCGTGTACCT
TGTAAGGTCATGGATATCGTACTGTGGATAGATGTGAGTAGGAAATCCGT
TATTTGGGTAAGGCTGCCTGTAGGGGTGCTCATATCGAACGAAGTAGTAA
AAGGCGTTGTGGCACCGCCCTGCCGCCCTGGTGGTTCCCTCTGTTGAGTA
TCTTCGAACTCCACGAACGCAACTTGTCGCGCATTTTCTCACGATGTTGC
GCCAGCCTTGGATGACAGGTGATGCCATATCTGATACAGAATAATGGCGA
AAACATGACTAGCGAAAGTTCTTATTGTTGGAATAATCGCGAAAACATGA
TTAGCGAAAGATCTTGTTGGATCCCGCAGGAGGCGGCCAGTGTGAACAAA
ACAGGTCAGACTGAAAGGTTAGAAAGGGGTAGGATGCGAAAAGTTGAGTG
GCGTGGAAAATGAAAATGATGCCCTTGTATACAGGTCTAGACTACAACCC
CCGTATGTCTCCAATAAGCTTTCCCCTATTCGAAATTCTTCGAGTTTCAC
CGGCGCTTGCTTGTCGGACTGCATGCTTGTCCCTGTGTCATCTGAGCGTG
GATGCTAACTATGTAGTAACTTGAATCAACATCGTGCGCTTCACATCTCT
TCCAATCTTGCGAATGCTAGGCCTACATTCACAAGGGCGATGTGCTCATC
TACGGGCTTGACGGAGTGCTGAGGCAGACTCTAGTAAACGATGGTGGGGT
ACGAGCTATGGAGGTGAAGATTTTTCGGTTTAGTTTTCAATAAAGTCGAA
CTAGCATGCCGTGGCGATATAGAATACCGTAGGAGTGGAGAGATGGCACC
GGGGTGCGAAAAAGAAACGAGAATAGCGTGATTTTTTTGTACTTCCGCAC
CGGGATCGGGTGTGATCTCACCGATCCTCAAATCCAAGATTGCGCTATTT
TTGGCCTGCCGTAAAGAGATACATGTGCGCCCCTTTCACGTGTGCCCCTT
TCACGTGTGAACACAGGTGTCAACGAAGCGTGACCTTTACATATCTTTGT
ACGGTTGGCGCGGTTCACGCGGGATCGTCTGTTGTTTTCATCTGATCAGT
ATGGAAGATGCAAACCATACACCACCCAAGTACAAAACGTACAAGATGCA
ACCTACCCCCACCTTAGGCAGCAAGTAAATATGTTGTGCTGCTTGCGTGC
TGGTACTCGTAGAGGATGACCGAAACGAAAGAGGAAGGCAACCAAATACC
CTGTGCACCGGTACTACCCCAGATGGAAACCACATCGTTTGTTGTCCTTT
TGTCATGCAAAAGCCAAACCCGGATTCAAACTCATGACCATTCGCTGCAA
GAAAAGCTGCTTTGTGCTAGCCTACGTTGTAAATATGTACGGTACGCCGC
GCATCGTCTGCTTTGAATACCTACATGGTACCAATACTCAGAGGGAGAGA
GACACACCGGTAGGGGAGATGCCACCGGGGTGCGCGAAAACCACACCACC
GTAGCACTACAAGTAAGGCCGCTGTCGGCATTTGATTGGGCATTGCACCG
GTCGGAGAGGTCGCACGGGGGTGCCTTGAAAAAAACAAAATGAGATTATT
TATTTTCATTTCCGCACCGGGGTTGGAGAGATCGCACAGGGGTGCGACAA
AAAACACGAAGAAAAAGCATTTTATAAATCGATCGCATCCGGTGCCTTCT
CTCCGACTCTTACGGTGCTTTCACGGCCGGCTCCTTGCGAAAGAAAGTCC
CATTGGCAAAGGGAAGCACTTGCTGCAGTCGGTCGAAAATTGTGGCGCAC
AACAAGCATCACCCTAAGCCAGTCTTGGCAAGGCACTGCGTCCTTGGCTC
GGCTTCCTATTAAATAAATTATTATCCGTGTGCGGATAGCCGGAACTTCT
CATGGCTTGTCGATCCCAACCATGAGTCAAGACTACCCAAGCGCATCCAC
CAATCCCGCCATCACAATTCTTCGTGGTAACGTGGCATCGATGACTGTAC
AAAGTTCCTGCCGACGTACTTTACCTGATTGATTGCGTACGCCGGTCTCC
ACACGGCGCACAGAGCAAGGCATACCTTCGTATTGTGGAGAATATTAGTG
TGGACAATTTCACGGCCGATGGTGTTCTACCACCACAACACCATTGTTTG
CTCTCTCGGGGCTCTTGGTGGCTTGCTTTCTCCTCGTAAACACCTTTATT
GCGCGTTTGACATTTCCTGGAGTGCTTGACAACAGGCTAACGTCGTACAC
GTATATGCATACAACATGCAAGGTGCTCTTGTGCTCGGGCGAAGACTTCG
ACTTCCTTGTGGTGGCCCTTAATACGGGGGTGCAGGTAATTGATCTACTC
TACTCCAACAAACATCAGTAGTAACACGGTGTCTCGGTGTGAGCTCATGT
TTTTGCTGTGACTGTGTTCTCGAGAAAAATGAAAAAAAGCGCAGAGAGAA
TCATATTCGAATACATGTTGTGCAGAACGTAGGGTATCTGGAAGGAGAGG
CGGTTTAGAGTTGGCTGCAATTCTTCGTGGACGGAACCCACACACAATAC
AAGAGCCAACAGGAGAGAGGGTGTGAGTGTTTGAGTCACTCCTGCCGCCA
GCGAACGTGCCGCCTGGCTTGTGGCGTGCCACTTGCGACAAACGCCTGCC
TTGGTAAAATGACTGTAGGTGCCTATCGTTAGTGGGGTGGGCGTCGCGAG
CTCGGGACATGGCAACCAGCAGACGTCGTCACAGATAGCCCTCGGTACAT
GTCCTTTTGATCTGTCGGCGTTTTTTGGACTATGCACGGTAACCTGGGCA
GGCACAAGACGTTTGAGGCCGCCCTCCTCCAAAGTGTATGAGCTCGGCGT
GTTTCTGCTGTTCTCTCGTTACATTCCTTCTTCACCGATGATTTCGTGCC
TTGCGCTTGGCTCAGGCACATCAGTTGAGATTTGTTGGTGCGGAGTCGGT
CGTGGGGTGAACCTGCATGCGCCCCTTTACCCTTGGATCCATGGCCGCAT
TACGTTGGGTGTGCGTCCTCACCGTAACACAGCCAGTTCGTCGGCATCCT
CCTCGTGGTGTCAGATCTGGTCGAGCGACGGGAGACGGCTCATCTACGTC
TTCGATGCGAAGACAGCGCCCGGTTCGTCCACGGTCGACGACGGCGGAAA
CTTCACCCAGGTAAGGGGAAAAGGGGCGGCCTTCACTCGCCGTCGATCTT
TGTTGAATTGTTTGCTGTTTATCACGTTGTTACTGCTGTTGTTGTTGTTG
TTGTTGTTGTTCGTGGTGACGCCATTGTTTGCGTGGTGGTGATCGTGCTA
CGATCCTACTCCGATGAGTAAGATCCATGACTATCCCTCCCCTGGTGTTT
CATCGCGAACAACTGGTTGCCAGGATTGTTACCGATAGTACAAGAAAAAA
CGAAAGCAGGATATAGAGTTGGAGAGGAACAGAGAGCAAAGCACGGTGTG
TCTCCTGTCTGCATTAATAATGAACAGCCGCTCGTGACCGCTTCTTTACG
GTGGGCCTAGACCGCATCGCCTCAAGAAAACCTTCAAAATCCACAACGAG
ACCAGGGCATTCCTAGCTCACGCGAGGCTTTTGAGATAGAACGCCACCCA
TACAGGTATCTTGAGTGGTCGTCCATATGCGGTACTGTAAAATAGGCCGA
TACTACCATGACGACAAACCGCCCAACAGCAGATACGTGTGCAAGACCAA
CATTGTCCACCGTGGAGAAAAAAACAGATAGGACAGCCTACTGAACAGCT
CTCCGGCTTCATGTGTGGGTCTGAATAAAAAGCCCGTGGAGGGCGAACCT
CTTCTTGCGCTCATACGTACGCGTCACGCATTCTTGCCTATCGTGCTCCG
AACGTCTGAACCCTGACCCAACGAGTGTTGCCCGTGTTCATTTCGATCAG
GGCATTGCGATGGTCCCGAGAGGGCGGAATTTTATCGTCGGCTGCAGCGA
CGGAGACGTGTTTGCGTTCCAAGCTAAGGTGCAGGATTTGGAGGATGCAA
TAAATGCAGGAAACAAGGCTAGGGGGGGCGTCCAGTCCACCCCCACACGT
TGTTTGTTTTTTCGAAGTTCCGAGCAAGGTCGAAGGTCCTCAACGGGCCG
TACATTAAACCGTATTCTTCTTCTCGCAAGAGGAAATTTGGTCAGAGAGA
TGCTTCAAAGTTGCACGGGCTTACGAGGAGCGCACAACTAATCAAGATTG
TGCACGGCCGTGCCATCATACCAAGAAATAAAAATAAGGAATCCATCGCT
TTCATCGTTTTACCGATACGTCTTAAATCGTGCCTTCTTTCTTCGTCGTT
CGATTGCACGAGAGGGCAGACCGGCCCCCAAGGGGAAGCGTGCGAGCTGA
CGGCTACTCTGAGAGGGCACTGCCAACCGATCACGTGCGCGACGGCCGAC
TTGGAGTGCTGCGTCTCCGGAGACGCGTGAGTGCCTCACGTATCGTTAGC
GCTAACCTTCCTCTAGCCGTGCATGATGGGCGCAACCCGAACCTGAGCCC
TATTTAGTCTAAAACCTGACCGAAGGGGAACGGTATCGAGCAACGTATAT
AACGCTACCCCGTGCAAGACTCTGGGGTGATTACGGGGGGAAGGGAACGG
GGGTCACAGTGTTGTGGAGCAGCCGGCGACGGCGGTGCCTTCATCACCGC
AATTCGTTTCTTCTTGAATTGTGGACCCATTAAGGACTTTGATCTCTGTC
TTCCAGGAGACTGATTTGTAGCCTTGTTCTGTTCAAGGTCGCGAGAAACG
GAATTGAACTCTTCCCTAGGATGACCGTCAACACCCGAGGTGAGGTTCCG
ATGTTATCCTCAAGAGTAAATGGGTTAAAATACCGTACCAAGGCGACATT
CGTTGTACTACGTTGGCTCACTTGCTTGATGCTCTTCGTCCTCAATCTTT
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTT
CCGTAGGGGCGGCACGGTCATAGTGTGGAGTATTGCCAAGCACCTTGAAC
GGGAATGCTCCTTCGACGGCGATGGGTGAGATTATGTCATAGGCACTACG
GTCAGAGTTAGGAATGGTGTACCGTGTAGAGAATTCCATACAGACGCTTG
ACACGCTAGTGTGACATGGCATACGGGCACTGATACGACGACAACCTGGG
GGAATCGATACTGATGCCTCCTCACACTCAGTAATTATTTCTGGCCTTTG
TCCAGTAGACCATCCCCTCTTCCGTGTCTTTCAATCAACAGAGCCGCATT
CCCGACGGATTATCAATGCCCGTAGGTTGTACTCATAGATCGCCACCATG
CATACCCCCGAAATCGCACCCTCTTGCCGCCCAGCACCCCCGCTACCGCC
CTGTGTGCACGAGACGGCTCAGTGGTGGCCTCGTACTCCACCGGACACCT
GCGCGTTTTCGACACACGTAGAAAGTGAGGATCGACCGAAGCGGTGGGGG
AAAGGGGGGAGTGCGGAGGACGTTCCCCGAAGCTTCACCTATCATGCGGT
TGTAGGCTTCGTGCGTCTCGTCGTTGGGTCGCCGTTGTTGATTGTTCCGT
GTTGGGTGTTGCGTTTGTCACGAAAAGCATCTGCACGTTAGGGAGGGAGA
TTCCGAGACCCAGCTGAGTTACGTGGGCATCCATGACAACAACACGAGAA
ACGTCGCGGTAAAAAGACCTACAATCAGCGCCCAATTTTTGATGACAAAA
CGACGATGGCCCTCCATTTCTGGACGTACCTACTCCGCAGCACCAGAAAC
ACACCACATGTAGCCGTTATTTCGTCGGTGGCGTCGTTTTACACCGCAAC
GGCGCGGTGGTGCCGTGGCGGGCGCCGGGGGCGAATATTTTGTCGCTTGT
CAATTGTGATACGAGCGTTTACCAGCACGTCGCTCTCGAGACCGTTACCA
TTTACTACTCTTCCTCACCACATCTTGACGGCCTTGACGTTTTGCTGTTC
GTGCGGGCGGGCGCGGGGGGGCGGGGCTGCCAGAACGCTTGCGATCGAGA
TCGCAGCGCACAGCCGCACCATCAACGCGATGGACCTGCATCCCTCCAGC
ATGCTGGTGAGACTTGCTGTTAGGGCGAGACGAAGGCAAGGCATGGAGAG
AAACGGATAAAACGTTCGTGGAGGGACAATCAATACTTCCCAGCAAGGAG
GAACAGTTGCCCGCGTCGGCAGCCTACTGTGTGTAGGAACGGTAACTCGT
TTTGTGCAGTGCGATCTCAGACCCCCCTTCAACCAATAAAGCTGCCGCAG
CTGACCGGCATGCCGTCCTGATGAAGAGAAGGAGAGGAGAAAGAACCGTT
CGTTGTCAACTCATCCCCGGTAACGCTGCCGTTGCTTGTTGATGAAACGT
TTTCATTCCCGCTCGTACGTCCTATCGCAGTTGGCTACGGTCGGGGAAGA
CTTGTTTCTCAACGTGTGGGAGCTACCCGAGTGCGGACAGGAGGGGCCAT
CAGGCCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1989:348..7155-

>mRNA_Ecto-sp13_S_contig1989.6462.1 ID=mRNA_Ecto-sp13_S_contig1989.6462.1|Name=mRNA_Ecto-sp13_S_contig1989.6462.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=840bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1989:348..7155- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTTGGGTCTCGGACGAAAGTGAGCCCCTCCCCCTCAAGCTCTCACC
TTCGCTGGGATTCAACAACCTGACGTCTAGCGTTTCCACCTTCGCCTACA
TTCACAAGGGCGATGTGCTCATCTACGGGCTTGACGGAGTGCTGAGGCAG
ACTCTAGTAAACGATGGTGGGGTACGAGCTATGGAGGTGCTCTTGTGCTC
GGGCGAAGACTTCGACTTCCTTGTGGTGGCCCTTAATACGGGGGTGCAGA
TCTGGTCGAGCGACGGGAGACGGCTCATCTACGTCTTCGATGCGAAGACA
GCGCCCGGTTCGTCCACGGTCGACGACGGCGGAAACTTCACCCAGGGCAT
TGCGATGGTCCCGAGAGGGCGGAATTTTATCGTCGGCTGCAGCGACGGAG
ACGTGTTTGCGTTCCAAGCTAAGACCGGCCCCCAAGGGGAAGCGTGCGAG
CTGACGGCTACTCTGAGAGGGCACTGCCAACCGATCACGTGCGCGACGGC
CGACTTGGAGTGCTGCGTCTCCGGAGACGCGGGCGGCACGGTCATAGTGT
GGAGTATTGCCAAGCACCTTGAACGGGAATGCTCCTTCGACGGCGATGGC
ACCCCCGCTACCGCCCTGTGTGCACGAGACGGCTCAGTGGTGGCCTCGTA
CTCCACCGGACACCTGCGCGTTTTCGACACACGTAGAAAAACGCTTGCGA
TCGAGATCGCAGCGCACAGCCGCACCATCAACGCGATGGACCTGCATCCC
TCCAGCATGCTGTTGGCTACGGTCGGGGAAGACTTGTTTCTCAACGTGTG
GGAGCTACCCGAGTGCGGACAGGAGGGGCCATCAGGCCAG
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