mRNA_Ecto-sp13_S_contig19875.6453.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19875.6453.1
Unique NamemRNA_Ecto-sp13_S_contig19875.6453.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19875.6453.1 vs. uniprot
Match: D7FMN5_ECTSI (BZIP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMN5_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 9.840e-9
Identity = 34/35 (97.14%), Postives = 34/35 (97.14%), Query Frame = 1 
Query:    1 ARDQAAASVEELLKDLAQGALDAHSISLAVSRMAP 105
            ARDQAAASVEELLKDLA GALDAHSISLAVSRMAP
Sbjct:  384 ARDQAAASVEELLKDLALGALDAHSISLAVSRMAP 418
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19875.6453.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMN5_ECTSI9.840e-997.14BZIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19875contigEcto-sp13_S_contig19875:1120..1980 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score62.4
Seed ortholog evalue1.7e-07
Seed eggNOG ortholog2880.D7FMN5
Model size369
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.basic region leucin zipper
EggNOG OGs2903V@1,2R6YT@2759
Cds size369
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463002.1243615-CDS-Ecto-sp13_S_contig19875:1119..14461681463002.1243615-CDS-Ecto-sp13_S_contig19875:1119..1446Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19875 1120..1446 -
1681463002.1364615-CDS-Ecto-sp13_S_contig19875:1938..19801681463002.1364615-CDS-Ecto-sp13_S_contig19875:1938..1980Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19875 1939..1980 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19875.6453.1prot_Ecto-sp13_S_contig19875.6453.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19875 1120..1980 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19875.6453.1

>prot_Ecto-sp13_S_contig19875.6453.1 ID=prot_Ecto-sp13_S_contig19875.6453.1|Name=mRNA_Ecto-sp13_S_contig19875.6453.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=123bp
ARDQAAASVEELLKDLAQGALDAHSISLAVSRMAPPPPPSYPPSERLPSS
SPDDPVSTTESTAAAAGCRLGAPPPSSSPAAAEPPQSTTSLPPPPPPLPP
TATAAEAAAAETTTAFPEPDLPS
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mRNA from alignment at Ecto-sp13_S_contig19875:1120..1980-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19875.6453.1 ID=mRNA_Ecto-sp13_S_contig19875.6453.1|Name=mRNA_Ecto-sp13_S_contig19875.6453.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=861bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19875:1120..1980- (Ectocarpus species13 EcNAP12_S_4_19m)
GCTCGAGACCAGGCGGCCGCTAGCGTGGAAGAGCTTCTCAAGGTACGTTG
TTGCTGTCGTTGTTGTTGATTTTGTCGGTGGAGGCGTTGCTGATGGTGGT
GTTGGTATTGCTCTCCTTGGCGCGGGCGTTCCCGCTGCTGGTGTTCCCGC
TGCTGTTGCTAGTTCTGCTGTTGCTGGTTCTGTGTGGTGCTGCTGCCGTT
GTGGTTGGCGGTGCCGTTGTTGTTGGGACCGACAGCCCAGCGGTAGTGCT
GGTTCTGTTGGTGCTGCTACCGTTGTCTTCAGCGCTTTCGTTGTTGCATG
CCCTTTTTGGGGGTTGTTGTCTGTGACGGGAACGTTTGCGTAGGTGGACA
CAGCAGCAGCAGCAACAACAACAAACAATTTCCCACTACTGTTGGTGGGA
AAATTTTACCAAGAGACAAGAGTAGTTGGCCTTACAAGCACAACCTTCCA
TGAGGTTACCGACCCTCCCGCTCCTATATCCCCCGTCCACGATGTCTTTG
AGCCCTCTTAACCCCCATCGTACTCGACGGGCAGGATCTCGCCCAGGGAG
CGCTCGACGCGCACTCCATCTCCCTCGCGGTGTCGCGGATGGCCCCGCCT
CCGCCCCCGTCGTACCCTCCGTCGGAGCGACTACCCTCGTCCTCTCCCGA
CGACCCCGTGAGTACCACCGAATCAACGGCGGCGGCGGCAGGGTGCCGGC
TAGGAGCACCGCCACCATCATCGTCACCCGCTGCTGCGGAGCCACCGCAG
TCGACTACGTCGTTGCCGCCGCCGCCGCCGCCGCTACCGCCGACAGCGAC
GGCGGCGGAGGCAGCAGCAGCCGAAACGACGACGGCGTTCCCAGAGCCCG
ACCTCCCGTCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19875:1120..1980-

>mRNA_Ecto-sp13_S_contig19875.6453.1 ID=mRNA_Ecto-sp13_S_contig19875.6453.1|Name=mRNA_Ecto-sp13_S_contig19875.6453.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=369bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19875:1120..1980- (Ectocarpus species13 EcNAP12_S_4_19m)
GCTCGAGACCAGGCGGCCGCTAGCGTGGAAGAGCTTCTCAAGGATCTCGC
CCAGGGAGCGCTCGACGCGCACTCCATCTCCCTCGCGGTGTCGCGGATGG
CCCCGCCTCCGCCCCCGTCGTACCCTCCGTCGGAGCGACTACCCTCGTCC
TCTCCCGACGACCCCGTGAGTACCACCGAATCAACGGCGGCGGCGGCAGG
GTGCCGGCTAGGAGCACCGCCACCATCATCGTCACCCGCTGCTGCGGAGC
CACCGCAGTCGACTACGTCGTTGCCGCCGCCGCCGCCGCCGCTACCGCCG
ACAGCGACGGCGGCGGAGGCAGCAGCAGCCGAAACGACGACGGCGTTCCC
AGAGCCCGACCTCCCGTCG
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