mRNA_Ecto-sp13_S_contig1986.6446.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1986.6446.1
Unique NamemRNA_Ecto-sp13_S_contig1986.6446.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1986.6446.1 vs. uniprot
Match: D7G8U3_ECTSI (Ribosomal_L2_C domain-containing protein n=3 Tax=Eukaryota TaxID=2759 RepID=D7G8U3_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 5.160e-7
Identity = 26/28 (92.86%), Postives = 27/28 (96.43%), Query Frame = 2 
Query:    2 KFKRDNELIVAVEGMYSGQFIYCGKKGT 85
            KFKRDNELIVAVEGMYSGQFIYCGKK +
Sbjct:   68 KFKRDNELIVAVEGMYSGQFIYCGKKAS 95
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1986.6446.1 vs. uniprot
Match: A0A7S3LED9_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LED9_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 2.110e-5
Identity = 21/28 (75.00%), Postives = 26/28 (92.86%), Query Frame = 2 
Query:    2 KFKRDNELIVAVEGMYSGQFIYCGKKGT 85
            K+K+DNEL+V VEGMY+GQF+YCGKK T
Sbjct:   68 KYKKDNELLVCVEGMYTGQFVYCGKKAT 95
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1986.6446.1 vs. uniprot
Match: A0A820S2J4_9BILA (Hypothetical protein n=2 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A820S2J4_9BILA)

HSP 1 Score: 53.1 bits (126), Expect = 4.780e-5
Identity = 22/30 (73.33%), Postives = 26/30 (86.67%), Query Frame = 2 
Query:    2 KFKRDNELIVAVEGMYSGQFIYCGKKGTRK 91
            ++K+  ELIVA EGMY+GQFIYCGKKG RK
Sbjct:   68 RYKKRKELIVAAEGMYTGQFIYCGKKGKRK 97
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1986.6446.1 vs. uniprot
Match: B8CCN2_THAPS (RL8, ribosomal protein 8 (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CCN2_THAPS)

HSP 1 Score: 53.5 bits (127), Expect = 5.400e-5
Identity = 22/28 (78.57%), Postives = 25/28 (89.29%), Query Frame = 2 
Query:    2 KFKRDNELIVAVEGMYSGQFIYCGKKGT 85
            +FKRD EL+VA EGMY+GQFIYCGKK T
Sbjct:   68 RFKRDTELMVATEGMYTGQFIYCGKKAT 95
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1986.6446.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G8U3_ECTSI5.160e-792.86Ribosomal_L2_C domain-containing protein n=3 Tax=E... [more]
A0A7S3LED9_9STRA2.110e-575.00Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A820S2J4_9BILA4.780e-573.33Hypothetical protein n=2 Tax=Rotaria sp. Silwood2 ... [more]
B8CCN2_THAPS5.400e-578.57RL8, ribosomal protein 8 (Fragment) n=1 Tax=Thalas... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1986contigEcto-sp13_S_contig1986:3284..3975 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size670
Hectar predicted targeting categoryother localisation
Exons2
Cds size534
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463001.5703084-UTR-Ecto-sp13_S_contig1986:3283..33261681463001.5703084-UTR-Ecto-sp13_S_contig1986:3283..3326Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1986 3284..3326 +
1681463001.5959973-UTR-Ecto-sp13_S_contig1986:3882..39751681463001.5959973-UTR-Ecto-sp13_S_contig1986:3882..3975Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1986 3883..3975 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463001.5792332-CDS-Ecto-sp13_S_contig1986:3326..36331681463001.5792332-CDS-Ecto-sp13_S_contig1986:3326..3633Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1986 3327..3633 +
1681463001.5876071-CDS-Ecto-sp13_S_contig1986:3655..38821681463001.5876071-CDS-Ecto-sp13_S_contig1986:3655..3882Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1986 3656..3882 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1986.6446.1prot_Ecto-sp13_S_contig1986.6446.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1986 3327..3882 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1986.6446.1

>prot_Ecto-sp13_S_contig1986.6446.1 ID=prot_Ecto-sp13_S_contig1986.6446.1|Name=mRNA_Ecto-sp13_S_contig1986.6446.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=178bp
MYSGQFIYCGKKGTRKFSPTHNARLGNFVWARENGFDGWLQITAAAAASP
IRRKRFDGWLPTTAGSPGVVLCVWETQPPLRTAAKRRSSSDYLFVHPPAR
LLYILSLYFRDTLFRRREVHRARAKQGVCRESVVGWTACTLMDGVRKQPR
QRSACFFLHSSYRESREHVSKSVNAYT*
back to top

mRNA from alignment at Ecto-sp13_S_contig1986:3284..3975+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1986.6446.1 ID=mRNA_Ecto-sp13_S_contig1986.6446.1|Name=mRNA_Ecto-sp13_S_contig1986.6446.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=692bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1986:3284..3975+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAAGTTCAAGAGGGACAACGAGCTCATCGTAGCTGTGGAGGGCATGTACT
CCGGGCAGTTCATCTACTGCGGGAAGAAGGGTACGCGGAAGTTCTCACCC
ACACACAACGCTCGCCTTGGAAATTTTGTGTGGGCACGAGAGAACGGGTT
TGATGGGTGGCTCCAGATAACAGCCGCGGCAGCAGCATCACCTATACGAC
GCAAGCGCTTTGATGGGTGGCTCCCGACGACAGCCGGTTCGCCAGGGGTT
GTGCTTTGTGTTTGGGAAACGCAGCCCCCCCTTCGCACGGCGGCAAAGCG
GCGGTCCTCCTCTGATTACCTCTTCGTTCACCCCCCAGCTCGCCTCCTCT
GTGCTTCCTCTCTATTTTCGAGACATTTTGTCTCTCTATTTTCGAGACAC
TTTGTTTCGAAGGAGAGAGGTGCACAGGGCCAGAGCAAAGCAAGGGGTGT
GTCGTGAGAGTGTCGTCGGTTGGACTGCATGCACCTTGATGGATGGCGTC
CGAAAACAGCCACGGCAGCGTTCTGCTTGCTTTTTTTTGCATAGCTCTTA
TAGAGAAAGTAGAGAGCACGTAAGCAAGTCAGTAAATGCTTACACATGAT
CTGAAAAAGATCTGCGCGGTTATGTGTAGATTTGTCATGTGTAACTGGGT
AGTGGTCCAGTTGTGTGGCAACATGTCCCGATTTTAGTTAGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1986:3284..3975+

>mRNA_Ecto-sp13_S_contig1986.6446.1 ID=mRNA_Ecto-sp13_S_contig1986.6446.1|Name=mRNA_Ecto-sp13_S_contig1986.6446.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=534bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1986:3284..3975+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTACTCCGGGCAGTTCATCTACTGCGGGAAGAAGGGTACGCGGAAGTT
CTCACCCACACACAACGCTCGCCTTGGAAATTTTGTGTGGGCACGAGAGA
ACGGGTTTGATGGGTGGCTCCAGATAACAGCCGCGGCAGCAGCATCACCT
ATACGACGCAAGCGCTTTGATGGGTGGCTCCCGACGACAGCCGGTTCGCC
AGGGGTTGTGCTTTGTGTTTGGGAAACGCAGCCCCCCCTTCGCACGGCGG
CAAAGCGGCGGTCCTCCTCTGATTACCTCTTCGTTCACCCCCCAGCTCGC
CTCCTCTACATTTTGTCTCTCTATTTTCGAGACACTTTGTTTCGAAGGAG
AGAGGTGCACAGGGCCAGAGCAAAGCAAGGGGTGTGTCGTGAGAGTGTCG
TCGGTTGGACTGCATGCACCTTGATGGATGGCGTCCGAAAACAGCCACGG
CAGCGTTCTGCTTGCTTTTTTTTGCATAGCTCTTATAGAGAAAGTAGAGA
GCACGTAAGCAAGTCAGTAAATGCTTACACATGA
back to top