mRNA_Ecto-sp13_S_contig198.6415.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig198.6415.1
Unique NamemRNA_Ecto-sp13_S_contig198.6415.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig198.6415.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig198contigEcto-sp13_S_contig198:27476..28660 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size159
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size159
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462999.155394-CDS-Ecto-sp13_S_contig198:27475..275551681462999.155394-CDS-Ecto-sp13_S_contig198:27475..27555Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig198 27476..27555 +
1681462999.169183-CDS-Ecto-sp13_S_contig198:28581..286601681462999.169183-CDS-Ecto-sp13_S_contig198:28581..28660Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig198 28582..28660 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig198.6415.1prot_Ecto-sp13_S_contig198.6415.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig198 27476..28660 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig198.6415.1

>prot_Ecto-sp13_S_contig198.6415.1 ID=prot_Ecto-sp13_S_contig198.6415.1|Name=mRNA_Ecto-sp13_S_contig198.6415.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=53bp
DIKSSGRCAYSRNAPRVTRGTDITPNRKDVEQQWRGPVFPPTMVASWWCQ
GAS
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mRNA from alignment at Ecto-sp13_S_contig198:27476..28660+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig198.6415.1 ID=mRNA_Ecto-sp13_S_contig198.6415.1|Name=mRNA_Ecto-sp13_S_contig198.6415.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1185bp|location=Sequence derived from alignment at Ecto-sp13_S_contig198:27476..28660+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACATAAAGTCTAGCGGTCGCTGTGCTTACAGCAGGAACGCACCAAGAGT
GACAAGAGGCACAGACATCACCCCGAACCGGTATGGAACCGTACTCTTTG
TTTGTTTGTGTCCCAACAGTCCAACTGACCTGTACATGTTTGGCAACGCA
TGCCAAGAAATTACGCCTGTTGCTTGACTGAAGTTTTACCAAAACATCAA
CCAAACCAACCCATGGCGTTGTGAACAGGGGGAGGAAATTGTCCTCGAGA
GAGGGCCGGGGAGATGAAAATCTACAGGTAGATGCATACCACGTCTGTCT
GTGACCTTTCTGTCTCCAGTGCACGCCAACCTAACGAACGTAGTACTATC
CGCGGTAGACTAAAGTCGTGTTGTCATCAATCGCTGATGTTTTTTTTTGG
TTTGAAACGGGATGGAAAACAACAACGTGTTGCGAGAGGGAGACTGATGC
TGTTGCTGTCACCCACTTCACGCTAAACAAACGTGTAACACAACGTACGG
GTGTAGGTCAGTATGGGCCCAAAAACAGAAACCACTTGCATGTGTGCAGT
ACTGTAGTTTTTCTTTTCATAGATGAGACAGCGGACAACAGAACACACGT
TGCACAAAAAAACACCACGATACATGTAAAACTTGCCGACGATTACCTAG
AACACTGCTACTGCTGTAGTGTTTTCTTGCAGCCATTTTTTTCTCCCTCG
GGGTGGTTTTAAGTGTCGTATACAAACGCTCCTCCTTTCGCTATGTATCG
GGCCTTGTGTGTGTTACAAATATGTAAAACTGTTTGTATCCAGTCATTCT
CACGGTTTTCGTGCCCTCTCTCGCGCAACATTCAGTATTCCTAGTCGACG
GGAGGATTTGACACGCGCGGAACGATGAGCGACCTCAGAAGATCCAACCA
ACAAACTTTTCCTGCTGTGCAGCAGAAATGTACTACATGACGGCCAACAA
GAGGGGGGCAAAACCGACCATGAGCTTGCTCTTTCGCGGGAGTACCACAG
CCTCGTCTCGCTACATTAACGCCGCAAAAATACTTTATCATGGCCAACTG
AAAAAACTTGTGTAAAGAGTACTTCCGGCCCCGACGTTGTGGCCCTCGTG
CGGCAGCAAAGACGTGGAGCAGCAGTGGCGTGGGCCAGTGTTCCCACCAA
CCATGGTCGCATCCTGGTGGTGTCAGGGAGCAAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig198:27476..28660+

>mRNA_Ecto-sp13_S_contig198.6415.1 ID=mRNA_Ecto-sp13_S_contig198.6415.1|Name=mRNA_Ecto-sp13_S_contig198.6415.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=159bp|location=Sequence derived from alignment at Ecto-sp13_S_contig198:27476..28660+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACATAAAGTCTAGCGGTCGCTGTGCTTACAGCAGGAACGCACCAAGAGT
GACAAGAGGCACAGACATCACCCCGAACCGCAAAGACGTGGAGCAGCAGT
GGCGTGGGCCAGTGTTCCCACCAACCATGGTCGCATCCTGGTGGTGTCAG
GGAGCAAGC
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