mRNA_Ecto-sp13_S_contig198.6411.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig198.6411.1 vs. uniprot
Match: D8LU61_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU61_ECTSI) HSP 1 Score: 442 bits (1136), Expect = 1.790e-155 Identity = 225/256 (87.89%), Postives = 226/256 (88.28%), Query Frame = 1
Query: 1 RNKGRWTKDEHERFLSVAGQLSKTTESWKWISKFVVTTRSPAQVRTHAQKYFQRIGQGRPFPDEPYTDDRLDDGEGHEQNEEEDQEG-----GRSTAAGEAPPPQIKGTPDGARCHSPPSSGLMAVVKVPSVVSLINSYDDGGGFPQAGGTPALPPSLCSPCGLFPGCTPGQGWQDSSLDPHVAVASAETVAGAAALGHDLDGGMFLPSGGCGEELSAPPPLPPLWSGIGDVSGASCGGSLSMPYDGGSGSPLDNW 753
RNKGRWTKDEHERFLSV GQL KTTESWK ISKFVVTTRSPAQVRTHAQKYFQRIGQGRPFPDEPY DDRLDDGEGHEQNE GRSTAAGEAPPPQIK TPDGARCHSPPSSGLM VVKVPSVVSLINSYDDGGGFPQAGGTPALPPSLCSPCGLFPG TP Q QDSSLDPHVA A+AET AGAAALGHDLDGGMFLPSGG GE SA PPLPPLWS IGD SGASCGGSLSMPYDG SGSPLDNW
Sbjct: 4 RNKGRWTKDEHERFLSVVGQLGKTTESWKLISKFVVTTRSPAQVRTHAQKYFQRIGQGRPFPDEPYADDRLDDGEGHEQNEXXXXXXXXXXXGRSTAAGEAPPPQIKATPDGARCHSPPSSGLMVVVKVPSVVSLINSYDDGGGFPQAGGTPALPPSLCSPCGLFPGFTPKQDGQDSSLDPHVAAAAAETAAGAAALGHDLDGGMFLPSGGSGEGSSAAPPLPPLWSDIGDSSGASCGGSLSMPYDGRSGSPLDNW 259
BLAST of mRNA_Ecto-sp13_S_contig198.6411.1 vs. uniprot
Match: A0A6H5L659_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L659_9PHAE) HSP 1 Score: 396 bits (1017), Expect = 9.770e-137 Identity = 204/256 (79.69%), Postives = 204/256 (79.69%), Query Frame = 1
Query: 1 RNKGRWTKDEHERFLSVAGQLSKTTESWKWISKFVVTTRSPAQVRTHAQKYFQRIGQGRPFPDEPYTDDRLDDGEGHEQNEEEDQEGGRSTAAGEAPPPQIKGTPDGARCHSPPSSGLMAVVKVPSVVSLINSYDDGGGFPQAGGTPALPPSLCSPCGLFPGCTPGQGWQDSSLDPHVAVASAETVAGAAALGHDLDGGMFLPSGGCGEELSAPPPLPPLWSGIGDVSGASCGGSLSMPYDGGSGSPLDNWYGKRW 768
RNKGRWTKDEHERFLSVAGQL KTTESWKWISKFVVTTRSPAQVRTHAQKYFQRIGQGRPFPDE QI TPD ARCHSPPSSGLMAVVKVPSVVSLINSYDD GGFPQAGG PALPPSLCSPCGLFPG TP QGWQDSSLDPHVA ASAET AGAAALGHDLD GMFLPSGG GE SAPPPLPPLWSGIGD SGASC GSLSMPYDG SGSPLDNWYGKRW
Sbjct: 20 RNKGRWTKDEHERFLSVAGQLGKTTESWKWISKFVVTTRSPAQVRTHAQKYFQRIGQGRPFPDENEXXXXXXXXXXX-----------XXXXXXXXXXXQIMATPDDARCHSPPSSGLMAVVKVPSVVSLINSYDDCGGFPQAGGIPALPPSLCSPCGLFPGFTPEQGWQDSSLDPHVAAASAETAAGAAALGHDLDRGMFLPSGGSGEGSSAPPPLPPLWSGIGDASGASCCGSLSMPYDGSSGSPLDNWYGKRW 264
BLAST of mRNA_Ecto-sp13_S_contig198.6411.1 vs. uniprot
Match: D8LU58_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU58_ECTSI) HSP 1 Score: 143 bits (361), Expect = 2.480e-39 Identity = 103/254 (40.55%), Postives = 113/254 (44.49%), Query Frame = 1
Query: 1 RNKGRWTKDEHERFLSVAGQLSKTTESWKWISKFVVTTRSPAQVRTHAQKYFQRIGQGRPFPDEPYTDDRLDDGEGHEQNEEEDQEGGRSTAAGEAPPPQIKGTPDGARCHSPPSSGLMAVVKVPSVVSLINSYDDGGGFPQAGGTPALPPSLCSPCGLFPGCTPGQGWQDSSLDPHVAVA-SAETVAGAAALGHDLDGGMFLPSGGCGEELSAPPPLPPLWS--GIGDVSGASCGGSLSMPYDGGSGSPLDNW 753
RNKGRWTKDEHERFLSVAGQL K ESW+WIS+ VVTTRSPAQVRTHAQKYF++IGQG PFPDE G QD+SLDPHVA A +AET AGAAALGHDLDGGMFLPSG G + L PLW+ +GD DGG G PLD+W
Sbjct: 26 RNKGRWTKDEHERFLSVAGQLGKNKESWRWISQVVVTTRSPAQVRTHAQKYFRKIGQGLPFPDE-------------------------------------------------------------------------------------------------------GGQDTSLDPHVAAAVAAETAAGAAALGHDLDGGMFLPSGSGGASSA----LAPLWADASVGDA-------------DGG-GFPLDSW 158
BLAST of mRNA_Ecto-sp13_S_contig198.6411.1 vs. uniprot
Match: A0A6H5JBL6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBL6_9PHAE) HSP 1 Score: 117 bits (294), Expect = 7.190e-30 Identity = 55/64 (85.94%), Postives = 58/64 (90.62%), Query Frame = 1
Query: 1 RNKGRWTKDEHERFLSVAGQLSKTTESWKWISKFVVTTRSPAQVRTHAQKYFQRIGQGRPFPDE 192
RNKGRWTKDEHERFL VAGQL K ESWKWIS+ VVTTRSPAQVRTHAQKYF++IGQG PFPDE
Sbjct: 49 RNKGRWTKDEHERFLCVAGQLGKNKESWKWISQVVVTTRSPAQVRTHAQKYFRKIGQGLPFPDE 112
BLAST of mRNA_Ecto-sp13_S_contig198.6411.1 vs. uniprot
Match: A0A6H5JA96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA96_9PHAE) HSP 1 Score: 107 bits (268), Expect = 1.650e-25 Identity = 80/171 (46.78%), Postives = 95/171 (55.56%), Query Frame = 1
Query: 310 TPDGA-RCHSPPSS---GLMAVVKVPSVVSL-------INSYDDGG------GFPQAGGTPALPPSLCSPCGLFPGCTPGQGWQDSSLDPHVAVASA-ETVAGAAALGHDLDGGMFLPSGGCGEELSAPPPLPPLWS--GIGDVSGASCGGSLSMPYDGGSGSPLDNWYGK 762
TPDGA R PP++ G M + P++ SL + Y+DGG FP A G PALPP LC P G+ PG+G QDS LDPHVA A+A ET AGAAALGHDLD GMFLPSGG G + LPPLW+ G+GD GG G L++W K
Sbjct: 6 TPDGAGRYPLPPTARFGGQMRLAGAPAMDSLGPGRIVPSHGYEDGGRASTGGSFPHAIGAPALPP-LCFPDGIASSFAPGEGGQDSCLDPHVAAAAAAETAAGAAALGHDLDEGMFLPSGGGGGASA----LPPLWADAGVGDA--------------GGGGFLLESWPSK 157
BLAST of mRNA_Ecto-sp13_S_contig198.6411.1 vs. uniprot
Match: D8LPL1_ECTSI (HTH myb-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPL1_ECTSI) HSP 1 Score: 62.4 bits (150), Expect = 1.820e-8 Identity = 31/66 (46.97%), Postives = 42/66 (63.64%), Query Frame = 1
Query: 1 RNKGRWTKDEHERFLSVAGQLSKTTESWKWISKFVVTTRSPAQVRTHAQKYFQRIGQGRPFPDEPY 198
+NKG+WT++EHE FLS Q + + +V TRS Q+RTHAQKYF +I +G FP +PY
Sbjct: 6 KNKGKWTREEHEAFLSGLWQHESNSHA-------LVPTRSALQIRTHAQKYFDKIERGEKFPAQPY 64
BLAST of mRNA_Ecto-sp13_S_contig198.6411.1 vs. uniprot
Match: D7FXQ4_ECTSI (HTH myb-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXQ4_ECTSI) HSP 1 Score: 61.2 bits (147), Expect = 3.240e-7 Identity = 33/66 (50.00%), Postives = 44/66 (66.67%), Query Frame = 1
Query: 1 RNKGRWTKDEHERFLSVAGQLSKTTESWKWISKFVVTTRSPAQVRTHAQKYFQRIGQGRPFPDEPY 198
RNKGRWT +EH FL +L K ++ S ++ TR+ QVRTHAQKYF ++ +G PFP+EPY
Sbjct: 5 RNKGRWTHEEHAEFLRGV-ELFKRSDLEAVAS--MLPTRTILQVRTHAQKYFDKVDKGEPFPNEPY 67
BLAST of mRNA_Ecto-sp13_S_contig198.6411.1 vs. uniprot
Match: UPI000E705CD7 (transcription factor MYBS1-like n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E705CD7) HSP 1 Score: 57.8 bits (138), Expect = 1.110e-6 Identity = 27/51 (52.94%), Postives = 34/51 (66.67%), Query Frame = 1
Query: 16 WTKDEHERFLSVAGQLSKTTESWKWISKFVVTTRSPAQVRTHAQKYFQRIG 168
WTKDEH +FL Q SK W+ IS+F + +R+P QV +HAQKYFQ G
Sbjct: 41 WTKDEHRKFLEGLEQFSKG--DWRSISRFFIVSRTPTQVASHAQKYFQHQG 89
BLAST of mRNA_Ecto-sp13_S_contig198.6411.1 vs. uniprot
Match: A0A6H5KVV5_9PHAE (HTH myb-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVV5_9PHAE) HSP 1 Score: 59.3 bits (142), Expect = 1.740e-6 Identity = 33/66 (50.00%), Postives = 43/66 (65.15%), Query Frame = 1
Query: 1 RNKGRWTKDEHERFLSVAGQLSKTTESWKWISKFVVTTRSPAQVRTHAQKYFQRIGQGRPFPDEPY 198
RNKGRWT +EH FL +L K ++ S ++ TR+ QVRTHAQKYF ++ +G PFP EPY
Sbjct: 5 RNKGRWTHEEHAVFLRGV-ELFKRSDLEAVAS--MLPTRTILQVRTHAQKYFDKVDKGEPFPTEPY 67
BLAST of mRNA_Ecto-sp13_S_contig198.6411.1 vs. uniprot
Match: UPI000CE1DF32 (probable transcription factor At5g61620 n=2 Tax=Quercus suber TaxID=58331 RepID=UPI000CE1DF32) HSP 1 Score: 55.8 bits (133), Expect = 2.460e-6 Identity = 27/48 (56.25%), Postives = 35/48 (72.92%), Query Frame = 1
Query: 13 RWTKDEHERFLSVAGQLSKTTESWKWISKFVVTTRSPAQVRTHAQKYF 156
RWT++EH+ FLS QL K WK IS+ VTT++PAQ+ +HAQKYF
Sbjct: 84 RWTEEEHKLFLSGLNQLGK--HDWKEISQKFVTTKTPAQIASHAQKYF 129 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig198.6411.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig198.6411.1 >prot_Ecto-sp13_S_contig198.6411.1 ID=prot_Ecto-sp13_S_contig198.6411.1|Name=mRNA_Ecto-sp13_S_contig198.6411.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=261bp RNKGRWTKDEHERFLSVAGQLSKTTESWKWISKFVVTTRSPAQVRTHAQKback to top mRNA from alignment at Ecto-sp13_S_contig198:5019..6307- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig198.6411.1 ID=mRNA_Ecto-sp13_S_contig198.6411.1|Name=mRNA_Ecto-sp13_S_contig198.6411.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1289bp|location=Sequence derived from alignment at Ecto-sp13_S_contig198:5019..6307- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig198:5019..6307- >mRNA_Ecto-sp13_S_contig198.6411.1 ID=mRNA_Ecto-sp13_S_contig198.6411.1|Name=mRNA_Ecto-sp13_S_contig198.6411.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=783bp|location=Sequence derived from alignment at Ecto-sp13_S_contig198:5019..6307- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |