mRNA_Ecto-sp13_S_contig19793.6409.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19793.6409.1
Unique NamemRNA_Ecto-sp13_S_contig19793.6409.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig19793.6409.1 vs. uniprot
Match: D7FNH6_ECTSI (Major facilitator transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNH6_ECTSI)

HSP 1 Score: 496 bits (1276), Expect = 1.540e-171
Identity = 265/289 (91.70%), Postives = 273/289 (94.46%), Query Frame = 1
Query:    1 QVVLEHFDHDDGEASRFTGWLTLVSCIVQLIAIPNLCGASDVIGRRAILAGALALTAVSSCSLRLAPSSITVVSVCQVVSGVANAILPISQAIIIDLSHWGAAAGGGEVTHGLGLIGAAFGLAVSVGPVLGGSLTEDHAGTACWLSASMSFLGVLSLKFFGWEETAPAAAQGTGGSAANTSARGRWKKLCARGSSSRIVNPFSVLKVFLESSQLMQLAVVLACFSLSLNVFSVYNNYFDFRYHWSPLDISSYLSTFGILQALTSGVLIRFLVPKRLSMGRGVLLGLALQ 867
            +VVLEHFDHD+GEASRFTGWLTLVSCIVQLIAIP LCGASDVIGRRAILAGALALTAVSS SL LAPSSI VVSVCQVVSGVANAILPISQA++IDLSHWGAAAGGGEVTHGLGLIGAAFGLAVSVGPVLGGSLTEDHAGTACWLSASMS LGVLSLKFFGWEETAPAA QG GG+ AN SA G WKKLCARGSSSRIVNPFSVLKVFLESS LMQLAVVLACFSLSLNVFSVY NYFDFRYHWSPLDIS + STFGIL ALTSG+LIRFLVPKRLS+GRGVLLGLALQ
Sbjct:   73 KVVLEHFDHDNGEASRFTGWLTLVSCIVQLIAIPTLCGASDVIGRRAILAGALALTAVSSFSLGLAPSSIAVVSVCQVVSGVANAILPISQAVVIDLSHWGAAAGGGEVTHGLGLIGAAFGLAVSVGPVLGGSLTEDHAGTACWLSASMSVLGVLSLKFFGWEETAPAATQGAGGATANASAGGGWKKLCARGSSSRIVNPFSVLKVFLESSLLMQLAVVLACFSLSLNVFSVYYNYFDFRYHWSPLDISLFFSTFGILLALTSGLLIRFLVPKRLSVGRGVLLGLALQ 361          
BLAST of mRNA_Ecto-sp13_S_contig19793.6409.1 vs. uniprot
Match: D7FNH7_ECTSI (Tetracycline-efflux transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNH7_ECTSI)

HSP 1 Score: 189 bits (480), Expect = 1.220e-51
Identity = 131/346 (37.86%), Postives = 181/346 (52.31%), Query Frame = 1
Query:    1 QVVLEHFDHDDGEASRFTGWLTLVSCIVQLIAIPNLCGASDVIGRRAILAGALALTAVSSCSLRLAPSSITVVSVCQVVSGVANAILPISQAIIIDLSHWGAAAGGGEVTHGLGLIGAAFGLAVSVGPVLGGSLTEDHAGTACWLSASMSFLGVLSLKFFGWEETAP--------------------------------------------AAAQGTGGSAANTSA------------RGRWKKLCARGSSSRIVNPFSVLKVFLESSQLMQLAVVLACFSLSLNVFSVYNNYFDFRYHWSPLDISSYLSTFGILQALTSGVLIRFLVPKRLSMGRGVLLGLALQV 870
            +++L     DDGEAS++ GWL     ++QLI +P + G SDV+GR+A++  A  L A S  +L     S+   +VC++ + V   ILP+SQAI+IDLS       G   THGLG+   A  L  S G ++GGSLTE H G AC +SA+ S   +LSL  FGW ETAP                                             AA   GG A   +A            +G   +  AR S  + +NP SVLKVFLES  L+++A     F LSLNVF+   NY D+R+ W+P +IS + +T+ IL AL  G +IRF+VPKRL+  +G L G+++QV
Sbjct:   96 KIILLSCGGDDGEASKYRGWLAAGVSVIQLIFVPAISGWSDVVGRKAVVCFAQVLHAGSVLALAAMADSLAWATVCRLATSVCIVILPVSQAIMIDLSP----DRGKGATHGLGIAFGASALGFSAGDIIGGSLTEHHRGAACLVSAAFSAASLLSLALFGWRETAPPLVGEGWQRWLWWRVEEQERIDDAVVGMNDDDDVGANRGICGRDVAAVVQGGDAVEATASVDSFVWDDDGKQGAGGRGRARRSGRKQLNPLSVLKVFLESRALLRIACSYFLFVLSLNVFATGYNYVDYRFGWTPSEISYFFATYNILMALAGGWVIRFIVPKRLTEEKGALFGISVQV 437          
BLAST of mRNA_Ecto-sp13_S_contig19793.6409.1 vs. uniprot
Match: A0A6H5L7V6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7V6_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 2.600e-29
Identity = 70/167 (41.92%), Postives = 100/167 (59.88%), Query Frame = 1
Query:    1 QVVLEHFDHDDGEASRFTGWLTLVSCIVQLIAIPNLCGASDVIGRRAILAGALALTAVSSCSLRLAPSSITVVSVCQVVSGVANAILPISQAIIIDLSHWGAAAGGGEVTHGLGLIGAAFGLAVSVGPVLGGSLTEDHAGTACWLSASMSFLGVLSLKFFGWEETAP 501
            +++L     DDGEAS++ GWL     ++QL+ +P + G+SDV+GR+ ++  A  L A S  +L     S+   +VC++ + V   ILP+SQAI+IDLS       G   THGLG+   A  L  S G ++GGSL E H G AC +SA+ +   +LSL  FGW ETAP
Sbjct:   56 KIILLSSGGDDGEASKYRGWLAAGVSVIQLLFVPAISGSSDVVGRKVVVCFAQVLHASSVLALAAMADSLVWATVCRLATSVCIVILPVSQAIMIDLSP----DRGKGATHGLGIAFGACALGFSAGDIIGGSLAEHHRGAACLVSAAFATASLLSLMLFGWRETAP 218          
BLAST of mRNA_Ecto-sp13_S_contig19793.6409.1 vs. uniprot
Match: A0A835YXD6_9STRA (Major facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXD6_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 3.090e-19
Identity = 62/180 (34.44%), Postives = 98/180 (54.44%), Query Frame = 1
Query:    1 QVVLEHFDHDDGEASRFTGWLTLVSCIVQLIAIPNLCGASDVIGRRAILAGALALTAVSSCSLRLAPSSITVVSVCQVVSGVANAILPISQAIIIDLS-HWGAAAGGGEVTHGLGLIGAAFGLAVSVGPVLGGSLTEDHAGTACWLSASMSFLG--------------VLSLKFFGWEET 495
            +VVL ++  DDG+ + F GW++  S ++Q +  P+L  + DV GRR +L  A    A+       +P++I + +   V++G+   ++P+SQAII D++ H GAAA      HG G+I   FGL + +GP+LGG LT  H   AC+ +A  + L               +L    +GWEET
Sbjct:  210 KVVLSYYGGDDGKTASFLGWVSGGSSMLQFVLSPSLTASCDVRGRRGLLLAAAGAQALICFIWGFSPNNIGLAAAVAVITGMCGVVIPVSQAIISDVTRHDGAAA-----AHGFGVIAGTFGLGLCIGPLLGGWLTNVHRPAACFTAAGAALLAHCWWRWWAGTALLALLVATVWGWEET 384          
BLAST of mRNA_Ecto-sp13_S_contig19793.6409.1 vs. uniprot
Match: A0A426U4E4_9CHLR (MFS transporter n=1 Tax=Candidatus Viridilinea halotolerans TaxID=2491704 RepID=A0A426U4E4_9CHLR)

HSP 1 Score: 71.2 bits (173), Expect = 2.610e-10
Identity = 79/278 (28.42%), Postives = 124/278 (44.60%), Query Frame = 1
Query:    7 VLEHFDHDDGEASRFTGWLTLVSCIVQLIAIPNLCGASDVIGRRAILAGALALTAVSSCSLRLAP--SSITVVSVCQVVSGVANAILPISQAIIIDLSHWGAAAGGGEVTHGLGLIGAAFGLAVSVGPVLGGSLTEDHAGTACWLSASMSFLGVLSLKFFGWEETAPAAAQGTGGSAANTSARGRWKKLCARGSSSRIVNPFSVLKVFLESSQLMQLA-VVLACFSLSLNVFSVYNNYFDF---RYHWSPLDISSYLSTFGILQALTSGVLIRFLVPK 822
            +L    H+  E++   G L+ +  ++QL+A P L   SD IGRR +L G+L  ++ +   L L     S+ ++ +     GVA A +P  QA I D +         E T  LGL+GAAFG+ + VGP  GG L+        + +A ++ LG          E+ PA              R R           R ++P S+      +  L  L  ++LA F L+L    + +N+  F   R+ W PLD   + +  G     T GVL+  L+P+
Sbjct:   31 LLPFIVHEQAESALVVGMLSSLYALMQLLAAPVLGTLSDRIGRRPVLLGSLLASSCAYALLGLGGMCGSLLLIGLAVAWGGVAGASIPTVQAYISDRAK------SSERTRSLGLVGAAFGIGLMVGPAAGGLLSVYGLNVPAFAAALLA-LGNALFALVALPESLPA------------ERRVR-----------RSLSPTSIASQIGYAVALPNLRPLLLAIFLLNLAFAGLQSNFPIFSSTRFGWDPLDNGIFFAFVGFCGVFTQGVLVGRLLPR 278          
BLAST of mRNA_Ecto-sp13_S_contig19793.6409.1 vs. uniprot
Match: A3U1K1_PSEBH (Putative transport transmembrane protein n=1 Tax=Pseudooceanicola batsensis (strain ATCC BAA-863 / DSM 15984 / KCTC 12145 / HTCC2597) TaxID=252305 RepID=A3U1K1_PSEBH)

HSP 1 Score: 70.5 bits (171), Expect = 4.950e-10
Identity = 77/281 (27.40%), Postives = 126/281 (44.84%), Query Frame = 1
Query:   37 EASRFTGWLTLVSCIVQLIAIPNLCGASDVIGRRAILAGALALTAVSSCSLRLAPSSITVVSVCQVVSGVANAILPISQAIIIDLSHWGAAAGGGEVTHGLGLIGAAFGLAVSVGPVLGGSLTEDHAGTACWLSASMSFLGVLSLKFFGWEETAPAAAQGTGGSAANTSARGRWKKLCARGSSSRIVNPFSVLKVFLESSQLMQLAVVLACFSLSLNVFSVYNNYFDFR-YHWSPLDISSYLSTFGILQALTSGVLIRFLVPKRLSMGRGVLLGLALQVLG 876
            +AS   GW+     + Q +  P +   SD  GRR++L  A+   AV      LAP+   ++ + ++++G+  A   I+ A + D++     A         G+IGAAFGL   +GP LGG L E       W +A+++         FG+     +   G                   R  S R  NPF VL+VF     ++ L +VL  +  +  V+     ++    + W+   I + L+ FGI+ ALT G+L   LV +R+   R ++ GL +  LG
Sbjct:   49 DASVIGGWMFAAYALAQFLFGPLIGSLSDAYGRRSLLLLAIGGLAVDYVFSALAPTFWLLI-LGRIIAGICGASHIIATAYLTDITPPEGRA------RAFGMIGAAFGLGFVIGPALGGLLGEFGPRVPFWAAAALAAANFA----FGYAVLPESLPPGK-----------------RRPLSLRRANPFGVLRVFRGYPSVLPLTMVLMLYFFAGQVYPTLWTFWGIAAFGWTEATIGATLALFGIMSALTEGLLSGPLV-RRMGESRVIVAGLIVAALG 300          
BLAST of mRNA_Ecto-sp13_S_contig19793.6409.1 vs. uniprot
Match: UPI0013004A95 (TCR/Tet family MFS transporter n=1 Tax=Pelagibacterium sediminicola TaxID=2248761 RepID=UPI0013004A95)

HSP 1 Score: 70.1 bits (170), Expect = 7.070e-10
Identity = 81/291 (27.84%), Postives = 134/291 (46.05%), Query Frame = 1
Query:    4 VVLEHFDHDD-GEASRFTGWLTLVSCIVQLIAIPNLCGASDVIGRRAILAGALALTAVSSCSLRLAPSSITVVSVCQVVSGVANAILPISQAIIIDLSHWGAAAGGGEVTHGLGLIGAAFGLAVSVGPVLGGSLTEDHAGTACWLSASMSFLGVLSLKFFGWEETAPAAAQGTGGSAANTSARGRWKKLCARGSSSRIVNPFSVLKVFLESSQLMQLAVVLACFSLSLNVF-SVYNNYFDFRYHWSPLDISSYLSTFGILQALTSGVLIRFLVPKRLSMGRGVLLGLALQV 870
            ++LE  D D+   A+   G+L  V   +Q +  P L   SD  GRR +L  +L   ++    +  AP+ +  + V +V+SG+  A +  + A + D++         + +   GLIGAAFGL + VGPV+GG L E       +L+A+++   V+   FF   E+                      K   R    +  NPF  +  F  +  ++ L   L  F+L+   + +V+N Y   ++ WSP  +   L  FGIL AL+  VL+   + +   +   +L GLAL V
Sbjct:   35 LILELTDGDNVANAAVIGGYLVFVYASMQFLFSPILGNLSDRWGRRPVLLLSLVGLSIDYFLMAWAPT-LAWLFVGRVLSGICGAAMGTATAYVADITPKE------KRSQRFGLIGAAFGLGLIVGPVIGGELGEFGPRAPFYLAATLAATNVV-FGFFVLPESL--------------------SKFRRRRFDLKRANPFGAILAFRHTPIVLVLLGALFLFALAGQTYPNVWNFYTIRQFDWSPSQVGRSLGVFGILFALSQAVLVGPAI-RYFGVAATILAGLALAV 296          
BLAST of mRNA_Ecto-sp13_S_contig19793.6409.1 vs. uniprot
Match: A0A1C2HBU0_9RHOB (ABC transporter permease n=2 Tax=Thioclava sp. SK-1 TaxID=1889770 RepID=A0A1C2HBU0_9RHOB)

HSP 1 Score: 68.2 bits (165), Expect = 2.650e-9
Identity = 72/284 (25.35%), Postives = 123/284 (43.31%), Query Frame = 1
Query:    7 VLEHFDHDD-GEASRFTGWLTLVSCIVQLIAIPNLCGASDVIGRRAILAGALALTAVSSCSLRLAPSSITVVSVCQVVSGVANAILPISQAIIIDLSHWGAAAGGGEVTHGLGLIGAAFGLAVSVGPVLGGSLTEDHAGTACWLSASMSFLGVLSLKFFGWEETAPAAAQGTGGSAANTSARGRWKKLCARGSSSRIVNPFSVLKVFLESSQLMQLAVVLACFSLSLNVFSVYNNYFDF-RYHWSPLDISSYLSTFGILQALTSGVLI-----RFLVPKRLSMG 837
            ++E   H D  +A+R  GW+     + Q +  P +   SD  GRR +L  A+    +      LAPS +  + + ++++G+  +   I+ A + D+S               G +GAAFGL   +GP LGG L E       W +A +S L   +   F   E+ P +A+                    R  + R  NP  VL VF     ++ +  VL  +  + +V+     ++   ++ WS   +   L+ FG++ ALT G+L      RF  P+ ++ G
Sbjct:   20 LIEQVGHLDLAQAARIGGWMFAGFSLAQFLCAPTMGALSDRFGRRPLLLLAVGGLGLDYLFHALAPS-LVFLFIGRIIAGICGSSFVIANAYLADIST------PEHRARAFGWMGAAFGLGFILGPALGGLLGEFGPRAPFWAAAGLS-LANFAFGLFALPESLPPSAR--------------------RPMNWREANPLGVLAVFRRHPGVLPMTGVLVLYFFATSVYVAIWPFWGMQKFGWSEATVGITLAAFGLVMALTQGLLTGPVGKRFGEPRVIAAG 275          
BLAST of mRNA_Ecto-sp13_S_contig19793.6409.1 vs. uniprot
Match: A0A534X623_9DELT (TCR/Tet family MFS transporter n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534X623_9DELT)

HSP 1 Score: 65.9 bits (159), Expect = 1.660e-8
Identity = 53/124 (42.74%), Postives = 75/124 (60.48%), Query Frame = 1
Query:   37 EASRFT-GWLTLVSCIVQLIAIPNLCGASDVIGRRAILAGALALTAVSSCSLRLAPSSITVVSVCQVVSGVANAILPISQAIIIDLSHWGAAAGGGEVTHGLGLIGAAFGLAVSVGPVLGGSLT 405
            +A+ FT G L  V  ++QLI  P     SD IGRR +L   LA +A+S   L  A   + V+ + +V++GVA A +P++QA I D++      G GE   G+GLIGAAFGL + +GP LGG L+
Sbjct:   41 KATPFTAGVLIAVYSLMQLIFAPVWGRVSDDIGRRPVLLLCLAGSAMSYLLLAAA-WRLEVLFLARVLAGVAGASIPVAQAYIADVT------GPGERARGMGLIGAAFGLGMVIGPALGGGLS 157          
BLAST of mRNA_Ecto-sp13_S_contig19793.6409.1 vs. uniprot
Match: A0A2T6DJ54_9BACT (Tetracycline resistance MFS efflux pump n=1 Tax=Opitutaceae bacterium EW11 TaxID=2161865 RepID=A0A2T6DJ54_9BACT)

HSP 1 Score: 65.9 bits (159), Expect = 1.740e-8
Identity = 77/295 (26.10%), Postives = 128/295 (43.39%), Query Frame = 1
Query:    4 VVLEHFDHDDGEASRFTGWLTLVSCIVQLIAIPNLCGASDVIGRRAILAGALALTAVSSCSLRLAPSSITVVSVCQVVSGVANAILPISQAIIIDLSHWGAAAGGGEVTHGLGLIGAAFGLAVSVGPVLGGSLTEDHAGTACWLSASMSFLGVLSLKFFGWEETAPAAAQGTGGSAANTSARGRWKKLCARGSSSRIVNPFSVLKVFLESSQLMQLA----VVLACFSLSLNVFSVYNNYFDFRYHWSPLDISSYLSTFGILQALTSGVLIRFLVPKRLSMG--RGVLLGLALQV 870
            +V E    +    S   G L  V  ++Q I  P L   SD IGRR ++  +LA  +V    +  AP+ +T + V +++SG    +L  + A + D++         +     GL+GAAFG+ + VGP+LGG L   +     W +A  + L  L   F   E   P   +              WK+           NP   L+       +  +A    +++ C ++   ++S +  Y   RYHW+   +   L   G+  A+   +L+R +VP   +MG  R VL GLA+ +
Sbjct:   36 LVTEFQGGEVSAGSHAYGLLVGVFALLQFIGSPILGSLSDRIGRRKVILLSLAGASVDYVIMANAPN-MTWLFVARMISGFTAGVLATANAYVADVTP------PEKRAQNYGLLGAAFGIGLIVGPLLGGMLGAINLRLPFWFAAGCAALNWLYGYFVLPESLKPEHRRSFS-----------WKR----------ANPVGALRALGRFPAVRSMANAYFILMLCQAM---LYSTWVLYMGHRYHWTTSQVGLSLGLAGVTSAIVQALLVRRIVP---AMGDERAVLFGLAVGI 296          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19793.6409.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNH6_ECTSI1.540e-17191.70Major facilitator transporter n=2 Tax=Ectocarpus T... [more]
D7FNH7_ECTSI1.220e-5137.86Tetracycline-efflux transporter n=1 Tax=Ectocarpus... [more]
A0A6H5L7V6_9PHAE2.600e-2941.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YXD6_9STRA3.090e-1934.44Major facilitator superfamily domain-containing pr... [more]
A0A426U4E4_9CHLR2.610e-1028.42MFS transporter n=1 Tax=Candidatus Viridilinea hal... [more]
A3U1K1_PSEBH4.950e-1027.40Putative transport transmembrane protein n=1 Tax=P... [more]
UPI0013004A957.070e-1027.84TCR/Tet family MFS transporter n=1 Tax=Pelagibacte... [more]
A0A1C2HBU0_9RHOB2.650e-925.35ABC transporter permease n=2 Tax=Thioclava sp. SK-... [more]
A0A534X623_9DELT1.660e-842.74TCR/Tet family MFS transporter n=1 Tax=Deltaproteo... [more]
A0A2T6DJ54_9BACT1.740e-826.10Tetracycline resistance MFS efflux pump n=1 Tax=Op... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19793contigEcto-sp13_S_contig19793:1293..3081 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score497.7
Seed ortholog evalue3.8e-138
Seed eggNOG ortholog2880.D7FNH6
Model size879
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.folate import across plasma membrane
EggNOG OGsKOG2816@1,KOG2816@2759
Ec32 ortholog descriptionTetracycline resistance protein, TetA/multidrug resistance protein MdtG
Ec32 orthologEc-01_005430.1
Cds size879
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462999.047543-CDS-Ecto-sp13_S_contig19793:1292..13491681462999.047543-CDS-Ecto-sp13_S_contig19793:1292..1349Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19793 1293..1349 +
1681462999.059163-CDS-Ecto-sp13_S_contig19793:1731..19701681462999.059163-CDS-Ecto-sp13_S_contig19793:1731..1970Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19793 1732..1970 +
1681462999.0690877-CDS-Ecto-sp13_S_contig19793:2335..26741681462999.0690877-CDS-Ecto-sp13_S_contig19793:2335..2674Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19793 2336..2674 +
1681462999.080757-CDS-Ecto-sp13_S_contig19793:2837..30811681462999.080757-CDS-Ecto-sp13_S_contig19793:2837..3081Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19793 2838..3081 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19793.6409.1prot_Ecto-sp13_S_contig19793.6409.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19793 1293..3081 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19793.6409.1

>prot_Ecto-sp13_S_contig19793.6409.1 ID=prot_Ecto-sp13_S_contig19793.6409.1|Name=mRNA_Ecto-sp13_S_contig19793.6409.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=293bp
QVVLEHFDHDDGEASRFTGWLTLVSCIVQLIAIPNLCGASDVIGRRAILA
GALALTAVSSCSLRLAPSSITVVSVCQVVSGVANAILPISQAIIIDLSHW
GAAAGGGEVTHGLGLIGAAFGLAVSVGPVLGGSLTEDHAGTACWLSASMS
FLGVLSLKFFGWEETAPAAAQGTGGSAANTSARGRWKKLCARGSSSRIVN
PFSVLKVFLESSQLMQLAVVLACFSLSLNVFSVYNNYFDFRYHWSPLDIS
SYLSTFGILQALTSGVLIRFLVPKRLSMGRGVLLGLALQVLG*
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mRNA from alignment at Ecto-sp13_S_contig19793:1293..3081+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19793.6409.1 ID=mRNA_Ecto-sp13_S_contig19793.6409.1|Name=mRNA_Ecto-sp13_S_contig19793.6409.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1789bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19793:1293..3081+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGGTCCTGGAACATTTTGATCACGACGATGGCGAAGCCTCTAGGTT TACCGGGGTGAGTGCAAGAGGCGGAGAGAGAAACCAAGAGAAAGAGACAC AAACGCAGTAGTGAGTGCAAAGGGCTGTTGGAGAGAAACACATACACAAG AACAAGACAAGTGCAAAGGGCTGCTGGAGACATACACATACACAAAAACA AGACAAAACCCACAGTTGTTTCGCCAAGCGGCGAGGGAGTCAGTTGCTGA TTGTCTCCCAGGCATCTACAACCTTGACGTAACCTGTAACGGCTATTTAC CTGTTTTTTTATTCCGCCGCCGACCGTGCCTGTGCAGACGCCCGCCCAGC ATCACGCTAAGGCTCGCTTCATTCACCCTCTCCGTCCCGTTCTCCCCTCC CCCCCTGACCCTCCGCCTCTAAAAAACGAACCCCGATAGTGGTTGACTCT CGTGTCGTGCATCGTTCAGCTCATCGCTATCCCGAACCTTTGCGGGGCTA GTGACGTCATCGGCCGACGTGCGATCCTCGCCGGCGCCCTGGCGCTCACC GCCGTGTCTTCGTGCTCCCTACGGCTCGCCCCGAGCTCCATCACAGTGGT GTCAGTGTGCCAGGTCGTGTCGGGCGTTGCGAACGCTATCCTGCCCATCA GCCAGGCGATAATTATCGACCTTTCTCAGTGAGTCTAAAGTTTGTGCATT TTCTGTTTCGAGCACCCCCGTCTTTAGTGCCATGCTTTTGCCTTATGATA GTGTGTTCTGACTCTTAATCAACATCGTGCTTATTGTGGCTTTTTTTTCT GTGGCTTTTGACGGCGTGACATCCATCGACCTCTTGAATTGCAATGACAA GGATAGTCGTCCATGTCTCTGAACAGATATGTTTTGGAGGGGAGGTGGTA GTGTGGCAGAGGCTATAGATTTACTCAAGCATCCCCTCCCCTTTGTTTTC GAACGTAACTATCAGCGCATGACCTCCCCCCCCCCCCCCCCTCCCTCCGC ATTTCCTTTGGCCTATTCGAACAATTAATCTTCGGACTTACAGCTGGGGG GCGGCTGCTGGAGGCGGTGAAGTGACTCACGGCCTCGGACTGATCGGCGC CGCGTTTGGTCTTGCGGTCAGCGTCGGCCCCGTTCTGGGGGGATCTCTCA CGGAGGATCATGCGGGCACGGCTTGCTGGCTGTCCGCGTCGATGTCTTTC CTGGGCGTGCTCTCGCTCAAGTTTTTCGGGTGGGAGGAAACGGCGCCCGC AGCCGCTCAAGGGACAGGGGGGTCTGCGGCGAACACGAGTGCACGAGGAA GATGGAAGAAACTCTGCGCTAGGGGCTCGTCGTCGAGAATCGTGAACCCA TTTTCGGTTCTCAAGGTGTTCCTCGAGAGCAGGTGGGATGTTTTCCTCTT GGTTGGGAGAGTGGGGACCTACGCGGGAGGTGCTTATGGATCCCCCCCCC CCCCCCCCCCTTCGCTCGCCCGGCAAACTCACTGACTACCCTGCATCCCA CCCGCGTCGCCCCCCGCCCCTGCTGTCGTCCAACCGCACAAGCAGCCAGC TGATGCAGCTGGCTGTGGTACTTGCATGCTTCTCCCTCTCCCTGAACGTG TTCAGCGTGTACAACAACTACTTCGACTTCCGGTACCACTGGAGCCCGCT AGACATCAGCTCATACCTCTCGACGTTTGGGATCTTGCAGGCGCTGACGT CGGGCGTTTTGATTCGCTTTCTCGTGCCGAAGCGGTTGTCGATGGGACGA GGCGTTCTGCTTGGTCTAGCGCTGCAGGTGCTTGGTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19793:1293..3081+

>mRNA_Ecto-sp13_S_contig19793.6409.1 ID=mRNA_Ecto-sp13_S_contig19793.6409.1|Name=mRNA_Ecto-sp13_S_contig19793.6409.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=879bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19793:1293..3081+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGGTCCTGGAACATTTTGATCACGACGATGGCGAAGCCTCTAGGTT
TACCGGGTGGTTGACTCTCGTGTCGTGCATCGTTCAGCTCATCGCTATCC
CGAACCTTTGCGGGGCTAGTGACGTCATCGGCCGACGTGCGATCCTCGCC
GGCGCCCTGGCGCTCACCGCCGTGTCTTCGTGCTCCCTACGGCTCGCCCC
GAGCTCCATCACAGTGGTGTCAGTGTGCCAGGTCGTGTCGGGCGTTGCGA
ACGCTATCCTGCCCATCAGCCAGGCGATAATTATCGACCTTTCTCACTGG
GGGGCGGCTGCTGGAGGCGGTGAAGTGACTCACGGCCTCGGACTGATCGG
CGCCGCGTTTGGTCTTGCGGTCAGCGTCGGCCCCGTTCTGGGGGGATCTC
TCACGGAGGATCATGCGGGCACGGCTTGCTGGCTGTCCGCGTCGATGTCT
TTCCTGGGCGTGCTCTCGCTCAAGTTTTTCGGGTGGGAGGAAACGGCGCC
CGCAGCCGCTCAAGGGACAGGGGGGTCTGCGGCGAACACGAGTGCACGAG
GAAGATGGAAGAAACTCTGCGCTAGGGGCTCGTCGTCGAGAATCGTGAAC
CCATTTTCGGTTCTCAAGGTGTTCCTCGAGAGCAGCCAGCTGATGCAGCT
GGCTGTGGTACTTGCATGCTTCTCCCTCTCCCTGAACGTGTTCAGCGTGT
ACAACAACTACTTCGACTTCCGGTACCACTGGAGCCCGCTAGACATCAGC
TCATACCTCTCGACGTTTGGGATCTTGCAGGCGCTGACGTCGGGCGTTTT
GATTCGCTTTCTCGTGCCGAAGCGGTTGTCGATGGGACGAGGCGTTCTGC
TTGGTCTAGCGCTGCAGGTGCTTGGTTGA
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