mRNA_Ecto-sp13_S_contig19787.6405.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19787.6405.1
Unique NamemRNA_Ecto-sp13_S_contig19787.6405.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19787.6405.1 vs. uniprot
Match: D8LSP4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSP4_ECTSI)

HSP 1 Score: 149 bits (376), Expect = 1.980e-44
Identity = 83/96 (86.46%), Postives = 86/96 (89.58%), Query Frame = 1 
Query:    1 MSGDDESKPAVAGPMHETEQ-KVPSVTEMMDKAAEDDFVARAXXXXXXXXVMGPSKPPEEYKRKEREIFELNKKPETNRWASGAFKRGVALQVTIL 285
            MSGDDESKPAVAGPM ETEQ KVPSVTEMMDKAAEDDFVARA    XXX VMGPSKPPEEYKRKERE FELNKKPETN+WASGAFKRG+ALQ  +L
Sbjct:    1 MSGDDESKPAVAGPMPETEQQKVPSVTEMMDKAAEDDFVARASASSXXXGVMGPSKPPEEYKRKERESFELNKKPETNQWASGAFKRGLALQAVVL 96
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BLAST of mRNA_Ecto-sp13_S_contig19787.6405.1 vs. uniprot
Match: A0A6H5KT39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT39_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 1.310e-43
Identity = 78/95 (82.11%), Postives = 81/95 (85.26%), Query Frame = 1 
Query:    1 MSGDDESKPAVAGPMHETEQKVPSVTEMMDKAAEDDFVARAXXXXXXXXVMGPSKPPEEYKRKEREIFELNKKPETNRWASGAFKRGVALQVTIL 285
            M+GDDESKPAVAGPM E EQKVPSVTEMMDKAAE DFVARA        VMGPSKPPEEYKRKERE FELNKKPETNRWASGAFKRG+ALQ  +L
Sbjct:   65 MTGDDESKPAVAGPMPEMEQKVPSVTEMMDKAAEADFVARASASSSSGGVMGPSKPPEEYKRKEREAFELNKKPETNRWASGAFKRGLALQAVVL 159
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19787.6405.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSP4_ECTSI1.980e-4486.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KT39_9PHAE1.310e-4382.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19787contigEcto-sp13_S_contig19787:132..416 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size285
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-15_003110.1
Cds size285
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462998.7711685-CDS-Ecto-sp13_S_contig19787:131..4161681462998.7711685-CDS-Ecto-sp13_S_contig19787:131..416Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19787 132..416 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19787.6405.1prot_Ecto-sp13_S_contig19787.6405.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19787 132..416 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19787.6405.1

>prot_Ecto-sp13_S_contig19787.6405.1 ID=prot_Ecto-sp13_S_contig19787.6405.1|Name=mRNA_Ecto-sp13_S_contig19787.6405.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=95bp
MSGDDESKPAVAGPMHETEQKVPSVTEMMDKAAEDDFVARASSSSSSGGV
MGPSKPPEEYKRKEREIFELNKKPETNRWASGAFKRGVALQVTIL
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mRNA from alignment at Ecto-sp13_S_contig19787:132..416-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19787.6405.1 ID=mRNA_Ecto-sp13_S_contig19787.6405.1|Name=mRNA_Ecto-sp13_S_contig19787.6405.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=285bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19787:132..416- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCGGCGACGACGAGAGCAAGCCGGCGGTGGCGGGGCCGATGCACGA
GACGGAGCAGAAGGTACCGAGCGTGACGGAGATGATGGACAAGGCGGCCG
AAGACGACTTCGTCGCCAGAGCCAGCTCAAGCAGCAGCAGCGGGGGCGTC
ATGGGCCCCTCCAAGCCGCCGGAGGAGTACAAGCGGAAGGAGAGGGAGAT
TTTTGAGCTCAACAAGAAGCCCGAGACCAACCGGTGGGCCTCCGGCGCCT
TCAAGAGAGGGGTCGCGCTCCAGGTAACAATACTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19787:132..416-

>mRNA_Ecto-sp13_S_contig19787.6405.1 ID=mRNA_Ecto-sp13_S_contig19787.6405.1|Name=mRNA_Ecto-sp13_S_contig19787.6405.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=285bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19787:132..416- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCGGCGACGACGAGAGCAAGCCGGCGGTGGCGGGGCCGATGCACGA
GACGGAGCAGAAGGTACCGAGCGTGACGGAGATGATGGACAAGGCGGCCG
AAGACGACTTCGTCGCCAGAGCCAGCTCAAGCAGCAGCAGCGGGGGCGTC
ATGGGCCCCTCCAAGCCGCCGGAGGAGTACAAGCGGAAGGAGAGGGAGAT
TTTTGAGCTCAACAAGAAGCCCGAGACCAACCGGTGGGCCTCCGGCGCCT
TCAAGAGAGGGGTCGCGCTCCAGGTAACAATACTC
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