mRNA_Ecto-sp13_S_contig19776.6398.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19776.6398.1
Unique NamemRNA_Ecto-sp13_S_contig19776.6398.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19776.6398.1 vs. uniprot
Match: D8LBU7_ECTSI (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBU7_ECTSI)

HSP 1 Score: 301 bits (770), Expect = 8.100e-101
Identity = 164/168 (97.62%), Postives = 164/168 (97.62%), Query Frame = 1 
Query:    1 RHRGEITKNAARKVDREKVVEEQLAALRQQQESRKHYNQLEEARKQQHARKLKLEAQEVALGERDHVTATMGDALFL--DSLTGEGLDGAGGEPGANGNAPAAVPAGMRQMLNIPAPLPQPQSNQDTRRRFASMSVTERRPRMQKAAAAPDRALGAKRNWAEMLGSLF 498
            RHRGEITKNAARKVDREKVVEEQLAALRQQQESRKHYNQLEEARKQQHARKLKLEAQEVALGERDHVTATMGD LFL  DSLTGEGLDGAGGEPGANGNAPAAVPAGMRQMLNIPAPLPQPQSNQDTRRRFASMSVTERRPRMQKAAAAPDRALGAKRNW EMLGSLF
Sbjct:  137 RHRGEITKNAARKVDREKVVEEQLAALRQQQESRKHYNQLEEARKQQHARKLKLEAQEVALGERDHVTATMGDGLFLFLDSLTGEGLDGAGGEPGANGNAPAAVPAGMRQMLNIPAPLPQPQSNQDTRRRFASMSVTERRPRMQKAAAAPDRALGAKRNWVEMLGSLF 304
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19776.6398.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LBU7_ECTSI8.100e-10197.62RING-type domain-containing protein n=2 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19776contigEcto-sp13_S_contig19776:663..3241 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score305.1
Seed ortholog evalue2.1e-80
Seed eggNOG ortholog2880.D8LBU7
Preferred nameTFB3
Model size501
KEGG koko:K10842
KEGG Pathwayko03022,ko03420,map03022,map03420
KEGG ModuleM00290
Hectar predicted targeting categoryother localisation
GOsGO:0000079,GO:0000109,GO:0000112,GO:0000428,GO:0001932,GO:0001934,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005675,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008047,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009889,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010562,GO:0010604,GO:0016070,GO:0016310,GO:0016538,GO:0016567,GO:0016591,GO:0016740,GO:0018130,GO:0019207,GO:0019209,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019538,GO:0019787,GO:0019887,GO:0030234,GO:0030295,GO:0030880,GO:0031323,GO:0031325,GO:0031326,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032147,GO:0032268,GO:0032270,GO:0032446,GO:0032774,GO:0032806,GO:0032991,GO:0033554,GO:0033674,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0042325,GO:0042327,GO:0043085,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043539,GO:0043549,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0045737,GO:0045787,GO:0045859,GO:0045860,GO:0045937,GO:0046483,GO:0046872,GO:0046914,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051252,GO:0051338,GO:0051347,GO:0051716,GO:0051726,GO:0055029,GO:0060255,GO:0061575,GO:0061630,GO:0061659,GO:0061695,GO:0065007,GO:0065009,GO:0070013,GO:0070647,GO:0070816,GO:0070985,GO:0071704,GO:0071900,GO:0071902,GO:0080090,GO:0090304,GO:0090575,GO:0097659,GO:0098772,GO:0140096,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1902494,GO:1902554,GO:1902911,GO:1903506,GO:1904029,GO:1904031,GO:1990234,GO:1990391,GO:2000112,GO:2001141
Exons5
EggNOG free text desc.cyclin-dependent protein serine/threonine kinase activator activity
EggNOG OGsCOG5220@1,KOG3800@2759
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-27_002640.1
Cds size501
COG Functional cat.DKL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03021,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462998.4033158-CDS-Ecto-sp13_S_contig19776:662..7941681462998.4033158-CDS-Ecto-sp13_S_contig19776:662..794Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19776 663..794 -
1681462998.4334383-CDS-Ecto-sp13_S_contig19776:1346..14831681462998.4334383-CDS-Ecto-sp13_S_contig19776:1346..1483Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19776 1347..1483 -
1681462998.4438345-CDS-Ecto-sp13_S_contig19776:2118..22571681462998.4438345-CDS-Ecto-sp13_S_contig19776:2118..2257Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19776 2119..2257 -
1681462998.4562545-CDS-Ecto-sp13_S_contig19776:2765..28201681462998.4562545-CDS-Ecto-sp13_S_contig19776:2765..2820Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19776 2766..2820 -
1681462998.466829-CDS-Ecto-sp13_S_contig19776:3203..32411681462998.466829-CDS-Ecto-sp13_S_contig19776:3203..3241Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19776 3204..3241 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19776.6398.1prot_Ecto-sp13_S_contig19776.6398.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19776 663..3241 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19776.6398.1

>prot_Ecto-sp13_S_contig19776.6398.1 ID=prot_Ecto-sp13_S_contig19776.6398.1|Name=mRNA_Ecto-sp13_S_contig19776.6398.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=167bp
RHRGEITKNAARKVDREKVVEEQLAALRQQQESRKHYNQLEEARKQQHAR
KLKLEAQEVALGERDHVTATMGDALFLDSLTGEGLDGAGGEPGANGNAPA
AVPAGMRQMLNIPAPLPQPQSNQDTRRRFASMSVTERRPRMQKAAAAPDR
ALGAKRNWAEMLGSLF*
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mRNA from alignment at Ecto-sp13_S_contig19776:663..3241-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19776.6398.1 ID=mRNA_Ecto-sp13_S_contig19776.6398.1|Name=mRNA_Ecto-sp13_S_contig19776.6398.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2579bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19776:663..3241- (Ectocarpus species13 EcNAP12_S_4_19m)
AGACACCGGGGCGAGATCACCAAAAACGCCGCCAGGAAGTGAGTAAGCAG
ATGGTAGATGGTAGATGGTGTTACCTGCCATGTAGATGCCGTGTTTACCT
GGGGGAGGGGGAGGTCCGGACTATAGGTTTTGGGTTGCTCGTACAGAAAC
AAATGAAAGGCCGTCGCGAGTCAATCGTTTATCTATTTTTTTTTTTGTCT
GGTAGGATTACGTGGAAGTTGAGATATGCATCAACGCACCGTCTTGTGCG
GCACACTCCCCGTAAGTGAACGGAGCGACATCACACTTTATGAAGAATTG
GTCCCGCTCTCCGTACTCATCACAACGGTGGCATCGACTTGCTGTTTTGT
GCCCGCCTCCGAATTCCCTCCCCTCGCTGTGATGATGATGATTGGGGCGG
CGGTGGTGGTGGTGGTGTCAGGGTGGACCGAGAAAAGGTCGTGGAGGAAC
AGCTTGCGGCGCTAAGACAGCAACAGGTGACTCACTCACTCGCTCTCATC
CGTTTTTTTCCGTCAGTGGTCCGGTGATCGACACAACAAGCGTTTCGTGA
CGGTCACGCATGCCAGCACTGGTCGTATATTTTGGCCTCGTTTGCCATGA
TAGATGTGTTTGGCCTCTTCTATTTTCGAGGGTGTACGCCACATGTCCAC
CTTTTCTGGGTTCGCGGCAGACACTGTCGCTCCCAGATGTCGATCACACA
AAAGACAGACACATAGTGTACACACACCGCCCATGAAGCGCGCCAGCCAA
AGTCCCGAAGCGTGTTCAGGTACATTCACCGGTGGTAAACAGTTTTTTTC
CCAACAACCGAGCGAGCGTCCCCCCCATCCGGCGTCCAACACAATATGGT
GATGACAGTTTTTGTGAATGCCTCTCCCACTTCTTGCACCCAGCCTATGT
ATAATGTACGGCACTGTAACACCCCCCTCTCCCCCCCTCTCTCTCGCCCG
CGCCGATTCGGCTCGGACCGGACTACCGCGGCAGGAGAGCCGCAAGCACT
ACAACCAACTGGAGGAGGCGCGCAAGCAGCAGCACGCGAGGAAGCTCAAG
CTGGAGGCCCAAGAAGTGGCTCTCGGGGAGCGAGATCACGTCACCGCCAC
CATGGGAGACGCTCTGTTCTTGGGTGAGAGAAGCGACGGGGCTGCCTGGG
CCGGGTCGCCTCACGACCGCAACGTGCTTCATGCGGCGTTTTTGATTCCT
ACGCGCGCGGGGGGGGTGGATTGTGGATTGCTAGCAGAGGCTGGGACGGC
ACCGTCCAATGTGTATTTGTCAAGAGGGGCATGGCGACGATGTGCTCGAT
TGTAGGCGTGCCCCTTCGATATTTTCGATAGACCCAGTGCTCCGTCGAAC
CATATTGCCACTGCTGTCTGCCCTGCACTACTACAGAACGAAACTGTTGG
TGAAGGGGGTGATGCAACGCTGTAGACTATTCATAATGTGCTGTGGAGTC
CTGTGTAGTAGCTTCGCGGCTCCGAACCGGTGTGTATCCGTGTGGACGGC
GGGTAAGCCTCGCAGGCCCTGCGATGCATGTTTTGTTCACGAGCAAGTCG
CGCTGCTGTGTTAAACCAAGGTGGCACGCTCCTGTAGTGCGTTTCGATGA
TGTACATCAGCGGTCCATCCAGCATGTACCACTGACATCACGTGAGAACC
AATGTAGACGCTTGCAAACCAAACCAATCGCACTTAAATACCTCTCTACT
AACCAAACGACGACGAAGACAATAACAACAACAACAACAATAACAACAAC
GATAACAGACAGCCTTACTGGGGAGGGGCTCGACGGAGCGGGAGGAGAGC
CGGGGGCGAACGGGAACGCGCCTGCGGCCGTTCCGGCAGGGATGAGGCAG
ATGCTCAACATACCCGCACCGCTGCCGCAGCCCCAGAGCAACCAGGTTTG
TTTGCGTAACGGCCTGTGCGTCCACAGCAGTGGCAGCACGTAGCAGTCGG
ATCGGGCGAGAGTCTTGACGCTAGGGTTTTTTGTACTGTGCCGATGTCAA
CGGCTTTTTTGTGTTTCGCAAAACGGAAGGAGGCATGCCGCGATCTAAAG
TAGATATGGAGATGCGTGCGATCGGGCTTGTGTATTGGCCCGTTTGCGTC
TGTCTGGCTATCGATTGCGGGCTTACCATTCCCGTGCCGGCAGTATTGCT
GTTGTTACGGCCATTGTCGTTAGTGTTGTATGCTCCACAATGAGTGGAAA
TCGACGAACGGATTTCCGTAGTAATCTCAGGTTACGGAATAATTGAAACT
GAAATAGTTAACACAGCGAAGTATGTTACACTCAGTTTAACAGATATTCA
TGGGCTGGTGGTGAATACGTACTGAACTTTGATTTCCAGCTCATTGTAAC
CCCGCCACCCCACCAGTGGCGCCCCCATCCCCTCTCACGGTCACACATAA
CGAAGTCCAACAATTTCCGTGTTGATTTGGTCGTTTGTTTTCGGCAGGAC
ACGCGAAGAAGGTTCGCCTCGATGTCGGTGACGGAGCGGCGTCCTCGCAT
GCAGAAGGCCGCCGCGGCGCCAGATCGAGCGCTCGGGGCCAAGCGGAACT
GGGCGGAGATGTTGGGCAGCCTATTCTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19776:663..3241-

>mRNA_Ecto-sp13_S_contig19776.6398.1 ID=mRNA_Ecto-sp13_S_contig19776.6398.1|Name=mRNA_Ecto-sp13_S_contig19776.6398.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=501bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19776:663..3241- (Ectocarpus species13 EcNAP12_S_4_19m)
AGACACCGGGGCGAGATCACCAAAAACGCCGCCAGGAAGGTGGACCGAGA
AAAGGTCGTGGAGGAACAGCTTGCGGCGCTAAGACAGCAACAGGAGAGCC
GCAAGCACTACAACCAACTGGAGGAGGCGCGCAAGCAGCAGCACGCGAGG
AAGCTCAAGCTGGAGGCCCAAGAAGTGGCTCTCGGGGAGCGAGATCACGT
CACCGCCACCATGGGAGACGCTCTGTTCTTGGACAGCCTTACTGGGGAGG
GGCTCGACGGAGCGGGAGGAGAGCCGGGGGCGAACGGGAACGCGCCTGCG
GCCGTTCCGGCAGGGATGAGGCAGATGCTCAACATACCCGCACCGCTGCC
GCAGCCCCAGAGCAACCAGGACACGCGAAGAAGGTTCGCCTCGATGTCGG
TGACGGAGCGGCGTCCTCGCATGCAGAAGGCCGCCGCGGCGCCAGATCGA
GCGCTCGGGGCCAAGCGGAACTGGGCGGAGATGTTGGGCAGCCTATTCTA
G
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