mRNA_Ecto-sp13_S_contig19764.6393.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig19764.6393.1 vs. uniprot
Match: D7FKU9_ECTSI (Derlin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKU9_ECTSI) HSP 1 Score: 513 bits (1321), Expect = 8.130e-181 Identity = 265/277 (95.67%), Postives = 269/277 (97.11%), Query Frame = 1
Query: 1 ARSALHSIALQMPPATRAYVLLLMVITAVDVSVGEAIDSGNTFSMDWGRTVKGLELWRPLTSLVYLGPLSMSWLTNVYFLTQHGTRLELVSGTAEQVIFLLVVGSLLLFLGPLIGMPLLSTSMVAAHTYVSARMDPLGAVQFQFLRIPMWTLPFAQMGAAVLQAEGSPLAAIPHFVGILCGHVYHFFTVVHPLMGAKRRLGAPGWMKRRLDGGDNPNFMETPDEPAAPRGRKIGAGKKAANKSKTRGTSKSGSSGSKRGGGKGRPVPDFPTADGGCS 831
A SAL + MPPATRAYVLLLMVITAVDVSVG+AIDSGNTFSMDWGRTVKGLELWRPLTSLVYLGPLSMSWLTNVYFLTQHGTRLELVSGTAEQVIFLLVVGSLLLFLGPLIGMPLLSTSMVAAHTYVSARMDPLGAVQFQFLRIPMWTLPFAQMGAAVLQAEGSPLAAIPHFVGILCGHVYHFFTVVHPLMGAKRRLGAPGWMKRRLDGGDNPNFMETPDEPAAPRGRKIGAGKK A+KSKTRGTSKSGSSGSK+GGGK RPVPDFPTADGGCS
Sbjct: 98 ALSALTGVFKNMPPATRAYVLLLMVITAVDVSVGKAIDSGNTFSMDWGRTVKGLELWRPLTSLVYLGPLSMSWLTNVYFLTQHGTRLELVSGTAEQVIFLLVVGSLLLFLGPLIGMPLLSTSMVAAHTYVSARMDPLGAVQFQFLRIPMWTLPFAQMGAAVLQAEGSPLAAIPHFVGILCGHVYHFFTVVHPLMGAKRRLGAPGWMKRRLDGGDNPNFMETPDEPAAPRGRKIGAGKKTASKSKTRGTSKSGSSGSKKGGGKARPVPDFPTADGGCS 374
BLAST of mRNA_Ecto-sp13_S_contig19764.6393.1 vs. uniprot
Match: A0A836CEG4_9STRA (Tricarboxylate carrier-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEG4_9STRA) HSP 1 Score: 189 bits (480), Expect = 8.220e-52 Identity = 101/192 (52.60%), Postives = 129/192 (67.19%), Query Frame = 1
Query: 109 IDSGNTFSMDWGRTVKGLELWRPLTSLVYLGPLSMSWLTNVYFLTQHGTRLELVSGTAEQVIFLLVVGSLLLFLGPLIGMPLLSTSMVAAHTYVSARMDPLGAVQFQF-LRIPMWTLPFAQMGAAVLQAEGSPLAAIPHFVGILCGHVYHFFTVVHPLMGAKRRLGAPGWMKRRLDGGDNP-NFMETPDEPA 678
+D+ F W RT+ LELWRPLT+ +YLGP+SM W TNVYFL +G+ LE V+GTAEQ++FLL + LG LI +P++STS+++A Y SAR+DPLG+V FQF L++P W LP+ LQA G AAIPH VGIL GH Y F PLMG + L APGW++RR+DGG NFME P + A
Sbjct: 7 VDAKEVFVASWPRTILNLELWRPLTAALYLGPISMHWATNVYFLITYGSHLEAVNGTAEQIVFLLTAFVCVTILGALISLPVVSTSLISACVYGSARVDPLGSVPFQFGLQMPRWLLPYGLAVVDFLQA-GKIEAAIPHAVGILAGHFYTFNRNTLPLMGGRDWLRAPGWLQRRVDGGGGATNFMEKPKKTA 197
BLAST of mRNA_Ecto-sp13_S_contig19764.6393.1 vs. uniprot
Match: A0A6U1QM22_9STRA (Derlin n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1QM22_9STRA) HSP 1 Score: 160 bits (405), Expect = 6.780e-43 Identity = 85/200 (42.50%), Postives = 124/200 (62.00%), Query Frame = 1
Query: 40 PATRAYVLLLMVITAVDVSVGEAIDSGNTFSMDWGRTVKGLELWRPLTSLVYLGPLSMSWLTNVYFLTQHGTRLELVSGTAEQVIFLLVVGSLLLFLGPLIGMPLLSTSMVAAHTYVSARMDPLG--AVQFQFLRIPMWTLPFAQMGAAVLQAEGSPLAAIPHFVGILCGHVYHFFTVVHPLMGAKRRLGAPGWMKRRLD 633
PATR Y+ + +V+T V ++ +D+ S++ RT K LE+WRP+TS ++GP SM N+YFL ++G LE GT + V FL+ LL LG ++G P +S+S++ A + +R+DP+ V F L +P W LPFA MG +LQA+ S A IPH G L GH YHFF ++PL+G ++ L AP ++KR LD
Sbjct: 90 PATRVYLSIALVLTVVHMT--GMVDAQQLLSLNLVRTFKNLEIWRPITSTCFMGPPSMQMAGNIYFLVKYGQELEANDGTLQHVFFLMTQLVLLSILGGVLGAPFMSSSLITAQLWCCSRLDPMSMVGVGFMGLAVPHWLLPFALMGIDILQAQ-SIAAGIPHVFGFLTGHFYHFFYRIYPLLGGRKLLEAPNFLKRMLD 286
BLAST of mRNA_Ecto-sp13_S_contig19764.6393.1 vs. uniprot
Match: A0A1Z5K2V8_FISSO (Derlin n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K2V8_FISSO) HSP 1 Score: 147 bits (371), Expect = 3.700e-38 Identity = 89/228 (39.04%), Postives = 133/228 (58.33%), Query Frame = 1
Query: 40 PATRAYVLLLMVITAVDVSVGEAIDSGNTFSMDWGRTVKGLELWRPLTSLVYLGPLSMSWLTNVYFLTQHGTRLELVSGTAEQVIFLLVVGSLLLFLGPLIGMPLLSTSMVAAHTYVSARMDPLGAVQFQFLRIPMWTLPFAQMGAAVLQAEGSPLAAIPHFVGILCGHVYHFFTVVHP-LMGAKRRLGAPGWMKRRLDGGDNPNFMETPDEPAAPR----GRKIGAG 708
P TR Y+ L+ V T + + +GE + G ++D R + GL+LWRP+T+ +LGP S+SWL N Y+L Q+G+ LE GTA+ +FLL LL L+G P + SM+ + +V +R P V++ +P W+LP+ M + VLQA+ SP+AA+PH +GIL GH YHF + P L + L AP ++ +RLD D E+ + R GRK+G+G
Sbjct: 94 PLTRIYITLVGVATLLGLVLGEELTQG-LLALDPMRVLYGLQLWRPITAATFLGPPSISWLLNGYYLFQYGSSLERAYGTAQHSVFLLSQLVLLSIFSTLVGQPFFANSMITSMLHVLSRSMPHQKVKWLVFTVPYWSLPYGLMASDVLQAQ-SPMAALPHIMGILTGHFYHFHKHIWPKLEQGQDWLVAPEFLSKRLDPADKDAGKESVSKALKLRKKNKGRKLGSG 319
BLAST of mRNA_Ecto-sp13_S_contig19764.6393.1 vs. uniprot
Match: A0A7S4N1A3_9STRA (Derlin n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N1A3_9STRA) HSP 1 Score: 144 bits (363), Expect = 5.550e-38 Identity = 82/225 (36.44%), Postives = 132/225 (58.67%), Query Frame = 1
Query: 40 PATRAYVLLLMVITAVDVSVGEAIDSGNTFSMDWGRTVKGLELWRPLTSLVYLGPLSMSWLTNVYFLTQHGTRLELVSGTAEQVIFLLVVGSLLLFLGPLIGMPLLSTSMVAAHTYVSARMDPLGAVQFQFLRIPMWTLPFAQMGAAVLQAEGSPLAAIPHFVGILCGHVYHFFTVVHPLMGAKRRLGAPGWMKRRLDGGDNPNFMETPDEPAAPRGRKIGAGKK 714
P TR Y+ ++ V+T + + +GE + G ++D R + GLELWRP T+ +LGP S+ WL + Y+L ++G+ LE GTA+ ++FL+ LL L G P + ++ A +V +R P V++ +P W+LP+ M + VLQA+ SP+AA+PH +GIL GH Y F+ + P MG + L AP ++ + LD + ++ + AA + RK G G+K
Sbjct: 9 PLTRIYITMIGVVTLMGLVLGEELAQG-VLALDPIRVMYGLELWRPFTAACFLGPPSIGWLMSAYYLFEYGSSLERAYGTAQHLVFLIWQIVLLTVLSAFFGQPFFAQPVITAMLHVLSRSMPKQKVKWLIFNVPYWSLPYGLMASDVLQAQ-SPMAALPHIMGILTGHFYFFYKFIWPKMGGEDWLTAPDFLSQWLDPNARSDSKKSVN--AALKARKKGKGRK 229
BLAST of mRNA_Ecto-sp13_S_contig19764.6393.1 vs. uniprot
Match: A0A7S1XM51_9STRA (Derlin n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XM51_9STRA) HSP 1 Score: 145 bits (365), Expect = 3.140e-37 Identity = 83/204 (40.69%), Postives = 123/204 (60.29%), Query Frame = 1
Query: 31 QMPPATRAYVLLLMVITAVDVSVGEAIDSGNTFSMDWGRTVKGLELWRPLTSLVYLGPLSMSWLTNVYFLTQHGTRLELVSGTAEQVIFLLVVGSLLLFLGPLIGMPLLSTSMVAAHTYVSARMDPLGAVQFQFL--RIPMWTLPFAQMGAAVLQAEGSPLAAIPHFVGILCGHVYHFFTVVHPLMGAKRRLGAPGWMKRRLDG 636
++ PATR Y+ + M +T V + + N ++D T+ L+ WRPLTS +LGPL+M+ T++YF+ G LE GTA+ V+FL+ +LL LGP++GMP S+S+V+A +VS R P+ + F+ + W +PFA+M LQA+ S AA+PH +G L GH YHF T + PL+G L AP MK+ L+G
Sbjct: 90 KLKPATRLYLSVAMALTMVATA---GLVDPNLMALDPLATIFNLQFWRPLTSAFFLGPLNMNMATSLYFVAMFGQELEKDKGTADYVVFLISQITLLTLLGPMLGMPYTSSSLVSAALWVSCRRKPMQKMGLGFMGMSVEAWLVPFARMVMDSLQAQ-SGAAALPHMLGFLTGHCYHFVTKIWPLVGGTNWLDAPPRMKKMLNG 289
BLAST of mRNA_Ecto-sp13_S_contig19764.6393.1 vs. uniprot
Match: A0A6U6GRJ3_9STRA (Derlin n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6GRJ3_9STRA) HSP 1 Score: 144 bits (363), Expect = 5.880e-37 Identity = 82/225 (36.44%), Postives = 132/225 (58.67%), Query Frame = 1
Query: 40 PATRAYVLLLMVITAVDVSVGEAIDSGNTFSMDWGRTVKGLELWRPLTSLVYLGPLSMSWLTNVYFLTQHGTRLELVSGTAEQVIFLLVVGSLLLFLGPLIGMPLLSTSMVAAHTYVSARMDPLGAVQFQFLRIPMWTLPFAQMGAAVLQAEGSPLAAIPHFVGILCGHVYHFFTVVHPLMGAKRRLGAPGWMKRRLDGGDNPNFMETPDEPAAPRGRKIGAGKK 714
P TR Y+ ++ V+T + + +GE + G ++D R + GLELWRP T+ +LGP S+ WL + Y+L ++G+ LE GTA+ ++FL+ LL L G P + ++ A +V +R P V++ +P W+LP+ M + VLQA+ SP+AA+PH +GIL GH Y F+ + P MG + L AP ++ + LD + ++ + AA + RK G G+K
Sbjct: 103 PLTRIYITMIGVVTLMGLVLGEELAQG-VLALDPIRVMYGLELWRPFTAACFLGPPSIGWLMSAYYLFEYGSSLERAYGTAQHLVFLIWQIVLLTVLSAFFGQPFFAQPVITAMLHVLSRSMPKQKVKWLIFNVPYWSLPYGLMASDVLQAQ-SPMAALPHIMGILTGHFYFFYKFIWPKMGGEDWLTAPDFLSQWLDPNARSDSKKSVN--AALKARKKGKGRK 323
BLAST of mRNA_Ecto-sp13_S_contig19764.6393.1 vs. uniprot
Match: A0A7S2P7M0_9STRA (Derlin n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P7M0_9STRA) HSP 1 Score: 142 bits (359), Expect = 2.310e-36 Identity = 86/229 (37.55%), Postives = 131/229 (57.21%), Query Frame = 1
Query: 34 MPPATRAYVLLLMVITAVDVSVGEAIDSGNTFSM--DWGRTVKGLELWRPLTSLVYLGPLSMSWLTNVYFLTQHGTRLELVSGTAEQVIFLLVVGSLLLFLGPLIGMPLLSTSMVAAHTYVSARMDPLGAVQFQFLRIPMWTLPFAQMGAAVLQAEGSPLAAIPHFVGILCGHVYHFFTVVHPLMGAKRRLGAPGWMKRRLDGGDNPNFMETPDEPAAPRGRKIGAGKK 714
M P TR Y+ ++ ++T + + VG D G M D R + GLELWRP T+ +LGP S+ WL N Y+L ++G+ LE G+A+ ++FLL LL +L + P +SM+ A +V +R P V++ +P W+LP+ M + VLQ++ SP +A+PH +GIL GH YHF + P +G + L AP ++ +RLD D + A +GRK G G+K
Sbjct: 101 MLPLTRVYITVVGIVTLLGLIVG---DEGAQMLMAFDMNRVLHGLELWRPFTAAAFLGPPSIGWLMNGYYLFEYGSSLERAYGSAQFLLFLLGQIFLLSWLSGIFAQPFFGSSMITAMLHVLSRSMPNQKVKWLIFTVPYWSLPYGLMASDVLQSQ-SPASALPHIIGILTGHFYHFHKFIWPKVGGEDWLVAPEFLSKRLDA-DAKRDVAKETISNALKGRKKGKGRK 324
BLAST of mRNA_Ecto-sp13_S_contig19764.6393.1 vs. uniprot
Match: A0A7R9U412_9STRA (Derlin (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U412_9STRA) HSP 1 Score: 140 bits (352), Expect = 2.370e-35 Identity = 84/201 (41.79%), Postives = 120/201 (59.70%), Query Frame = 1
Query: 40 PATRAYVLLLMVITAVDVSVGEAIDSGNTFSMDWGRTVKGLELWRPLTSLVYLGPLSMSWLTNVYFLTQHGTRLELVSGTAEQVIFLLVVGSLLLFLGPLIGMPLLSTSMVAAHTYVSARMDPLGAVQFQFLRIPM--WTLPFAQMGAAVLQAEGSPLAAIPHFVGILCGHVYHFFTVVHPLMGAKRRLGAPGWMKRRLDG 636
PATR Y+ + +T + I + N ++D + GL+ WRPLTS ++LG L+M T++YFL +G LE GTA+ V+FLL LL L PL+GMP S+S+V+A +VS R P+ + + I M W +PF +M LQA+ +P+AA+PH +G + GH YHF T V PL+G K L AP MK+ L+G
Sbjct: 111 PATRLYITGALALTLLATF---GIVNPNMLALDPMAALLGLQFWRPLTSALFLGGLNMQMATSLYFLGMYGQELEKDRGTADYVVFLLTQVILLSVLAPLLGMPYTSSSVVSAALWVSCRRRPMQKLSLGVMGISMEAWLVPFGRMLIECLQAQ-NPIAALPHMLGFVSGHFYHFTTRVWPLLGGKDWLQAPPKMKKLLNG 307
BLAST of mRNA_Ecto-sp13_S_contig19764.6393.1 vs. uniprot
Match: B7FP36_PHATC (Derlin n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FP36_PHATC) HSP 1 Score: 139 bits (349), Expect = 6.210e-35 Identity = 75/198 (37.88%), Postives = 113/198 (57.07%), Query Frame = 1
Query: 40 PATRAYVLLLMVITAVDVSVGEAIDSGNTFSMDWGRTVKGLELWRPLTSLVYLGPLSMSWLTNVYFLTQHGTRLELVSGTAEQVIFLLVVGSLLLFLGPLIGMPLLSTSMVAAHTYVSARMDPLGAVQFQFLRIPMWTLPFAQMGAAVLQAEGSPLAAIPHFVGILCGHVYHFFTVVHPLMGAKRRLGAPGWMKRRLD 633
P TR Y+ ++ V T + + GE + ++D R G E WRP T+ +LGP+S+ WL + Y+L ++G+ LE GTA+ +FL+ L FL L G P SM+ A +V +R P V++ +P W+LP+ M + VLQA+ S +AA+PH +GI+ GH YHF + P G + L AP ++ RRLD
Sbjct: 102 PLTRIYITMVGVATLISIIFGEEFTQ-SLLALDPTRAFYGFEFWRPFTAASFLGPISIGWLMSGYYLFEYGSSLERAYGTAQHFVFLMSQVFGLTFLSSLTGQPFFGQSMITAMLHVLSRAMPHQKVKWLIFTVPYWSLPYGLMASDVLQAQ-SAMAALPHILGIVSGHFYHFHKFIWPKKGGEDWLVAPDFLVRRLD 297 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19764.6393.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig19764.6393.1 >prot_Ecto-sp13_S_contig19764.6393.1 ID=prot_Ecto-sp13_S_contig19764.6393.1|Name=mRNA_Ecto-sp13_S_contig19764.6393.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=267bp MPPATRAYVLLLMVITAVDVSVGEAIDSGNTFSMDWGRTVKGLELWRPLTback to top mRNA from alignment at Ecto-sp13_S_contig19764:12..2659+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig19764.6393.1 ID=mRNA_Ecto-sp13_S_contig19764.6393.1|Name=mRNA_Ecto-sp13_S_contig19764.6393.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2648bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19764:12..2659+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19764:12..2659+ >mRNA_Ecto-sp13_S_contig19764.6393.1 ID=mRNA_Ecto-sp13_S_contig19764.6393.1|Name=mRNA_Ecto-sp13_S_contig19764.6393.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=801bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19764:12..2659+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |