mRNA_Ecto-sp13_S_contig19750.6384.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19750.6384.1
Unique NamemRNA_Ecto-sp13_S_contig19750.6384.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19750.6384.1 vs. uniprot
Match: D7FU45_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU45_ECTSI)

HSP 1 Score: 338 bits (868), Expect = 2.720e-113
Identity = 176/184 (95.65%), Postives = 178/184 (96.74%), Query Frame = 1 
Query:    4 TDLRPLFVLSLCLLLDPCGSFLHSSRGVGCLRCPRLVQRSPLPRGQKLSATMSSVVAVGQGKAKREPPRLLENLEVGERLKGVVVTELDGTSGKKAWVRVGVMRRAKGGKFSHVDGMIRLNKEKGLKPKKVAIDKPVTVYVSKVIEAEGRLEVSLRAPKPLVPIVDTSTLKPLADLKRGEELTG 555
            TDLRP FVLSLCLLLDPCGSFLHSSRGVGCL CPRLVQRSPLPRGQ+LSATMSSV AVGQ KAKREPPRLLENLEVGERLKGVVVTELDGTSGKKAWVRVGVMRRAKGGKFSHVDGMIRLNKEKGLKPKKVA+DKPVTVYVSKVIEAEGRLEVSLRAPKPL PIVDTSTLKPLADLK GEELTG
Sbjct:    3 TDLRPRFVLSLCLLLDPCGSFLHSSRGVGCLPCPRLVQRSPLPRGQRLSATMSSVPAVGQKKAKREPPRLLENLEVGERLKGVVVTELDGTSGKKAWVRVGVMRRAKGGKFSHVDGMIRLNKEKGLKPKKVAVDKPVTVYVSKVIEAEGRLEVSLRAPKPLAPIVDTSTLKPLADLKHGEELTG 186
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19750.6384.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FU45_ECTSI2.720e-11395.65Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19750contigEcto-sp13_S_contig19750:523..3219 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size555
Hectar predicted targeting categorysignal peptide
Exons3
Ec32 ortholog descriptionRibosomal protein S1, RNA-binding domain
Ec32 orthologEc-25_000700.1
Cds size555
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462997.223707-CDS-Ecto-sp13_S_contig19750:522..6451681462997.223707-CDS-Ecto-sp13_S_contig19750:522..645Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19750 523..645 -
1681462997.2371695-CDS-Ecto-sp13_S_contig19750:1963..21671681462997.2371695-CDS-Ecto-sp13_S_contig19750:1963..2167Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19750 1964..2167 -
1681462997.248343-CDS-Ecto-sp13_S_contig19750:2991..32191681462997.248343-CDS-Ecto-sp13_S_contig19750:2991..3219Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19750 2992..3219 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19750.6384.1prot_Ecto-sp13_S_contig19750.6384.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19750 523..3219 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19750.6384.1

>prot_Ecto-sp13_S_contig19750.6384.1 ID=prot_Ecto-sp13_S_contig19750.6384.1|Name=mRNA_Ecto-sp13_S_contig19750.6384.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=185bp
MTDLRPLFVLSLCLLLDPCGSFLHSSRGVGCLRCPRLVQRSPLPRGQKLS
ATMSSVVAVGQGKAKREPPRLLENLEVGERLKGVVVTELDGTSGKKAWVR
VGVMRRAKGGKFSHVDGMIRLNKEKGLKPKKVAIDKPVTVYVSKVIEAEG
RLEVSLRAPKPLVPIVDTSTLKPLADLKRGEELTG
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mRNA from alignment at Ecto-sp13_S_contig19750:523..3219-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19750.6384.1 ID=mRNA_Ecto-sp13_S_contig19750.6384.1|Name=mRNA_Ecto-sp13_S_contig19750.6384.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2697bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19750:523..3219- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACAGACCTCCGGCCACTCTTTGTCCTCTCTCTCTGCTTGCTGTTGGA
CCCATGCGGTTCGTTCTTGCACAGCAGTCGCGGTGTTGGTTGTCTTCGAT
GCCCTCGACTGGTCCAGCGCTCGCCACTTCCTCGCGGTCAGAAGCTCTCC
GCAACGATGTCGTCGGTGGTGGCGGTCGGGCAGGGGAAAGCGAAGCGAGA
GCCGCCCCGTCTGCTCGAGAACTTGGAGGTAACCGCGGTACAGCAGTACT
GCAATCACCGAGTTACCGCGCCATGTTGGTTCACTTTGCACCCCAGCAGG
AGTAGTGCATACCGGGGCAGTTAATCGGCGGTTGGGTGTACAGCAATCTT
GGCGTTATGCTCTTCGTTGTTGCGATATCAACCAAGAAACATGTGTCATT
TAGTAAATAGACCTTTTTGTTCGCCGCCAAACACGAGGCGCATGGATCGC
GGTGCGTGGTGACACACGGCGAGCGGGACAGGCATCAAGGGCGAAGGGGG
TGGTAACACTGCACACCGACTTTGCTGTCGAGGCTGTGCTAGCGTATGGT
TGGACGCATCGGCGTGGCTTGTTGTTGTTGTTGTTGTCTTCACGTAAAAC
AACGTTCCGTTCTCCGCTCAGTACCTTCTGATGTCCGCACCGGTTCAACC
GACGCGGATTCCTTCCGTGGTAACAAACTTTTCAAGCAATTAAAGAAGGG
GTACACCTTTCTAGAAGTAAAAAGATCCGGTGAAAATCTTGCCCAATCGA
AACAAACCATTCTTCCCCCGATCCCAAGGAAATCTACCCGCAATCACTGA
TCGAGAAAATACGTGGTGGTACAGTATGCATAGAGTCGAAGGGATATGTT
GAAGTCTTTTACTGCAGCAGGAGTGAGTGGAGAAAGAAACCTGCTGGACA
CGAGCCTTTCTTGAAGCTGTTTCAAGCCTCGATGTACGGTGAAGGATCAG
CTCCTGTCGAAGGCTCGCCCCATGGGCAGGCAGCAACCTAAGATGCCTAC
TTCCGTTTCATCGGACCCTGATTATTGTTGTCATGCCGGCCTTCACTCTC
AGGTGGGCGAGAGGTTAAAGGGCGTGGTGGTGACCGAGCTGGACGGGACA
AGCGGCAAGAAGGCGTGGGTGAGAGTCGGGGTGATGCGGCGCGCCAAGGG
GGGCAAGTTCTCGCACGTGGACGGCATGATCCGGCTGAACAAGGAGAAGG
GGCTCAAGCCGAAGAAGGTGGCGATCGACAAGCCGGTCACCGTCTACGTC
AGCAAGGTACCGTGGATCTGATGCCGTTGTCGTACAATCGGTACCCTTCG
TAAGGAATTTAAGCCACACGAGGTGGTGTTCAGGGATAGGGTTAGGATTA
GGGATGGGGATACGAATCCCCCCTCTCTATTTCATAGATTAACAATCAAA
TCCTCGCGACGGCGGTCCTATCGTATCTTGCAGGCGGTGGCGGTAGTTGA
TTGGCCGGCTTGCCGTTGGGAGCTTGTTACCGTTGGAGCAGGACGGTTTG
TAGAGTGCTCGGCAGGCCTGTAGCTTCGCCAGAAAAAATGTAGGGCTACA
ACACGCACGACGACGTAGGGCTCCAAACTGCCACACAACCTTGAGGGGGG
TGTCGGAGTACTATAGGTTGCATAATGTATCACACCCCCTGGAGAGCAGT
GACGGTGCCGAAAATGGCGGGGTTGAACCGTCTCGTCGAGAGCTTTCCGA
CAACGTATACTTCGATTTCGGCACCCTCTTCGTCGTGGAGTACCGTAATT
GTTCGTGTTATCGCACCCTAGTGTTAGCGTTTTTCTATAGCGTATTTCTC
CACAACTAGGAGGGTGCGAACACCAACTGATACCTCTCCGGGAAGCCTTC
GACGAGATGTTTCTAAAACCACCCCTTTCGGAGGTAACAACTCCCTAGTT
GTGGAGAAATACGCTATAGAAAAAAACTAACACGGGGGTGCGGTAACACG
CACAATTACAGTAGTCGAGTTATTAAAGTCGGTCAAGGGGGTGCGATATC
TTATGCAACCTACGGTTTTTTTTCCCACCCCAACCCCCGCGCTGGCAAGC
ACGATAAAAGTTTCTGGCGCACGCACGAAAGTTCTCCAACGCTTCTCTTG
GGCCCAAGTTGTTTTTTTTGCGAAATGGGCTACGGCACGCTTGCATACGA
AAGAGGCTGAAGGTCGACAACCATGGTATCACCATGACGGCCGACAGCAG
CCAGTGAAAACACACACGTCCTACACGGGCCACTTTGCTGCCCCCTCCAG
GCCCTCGCCCACTCTCGTGAGGCCCCCTTGCCCCCCCCCCCCACACACCT
TTGGCAAAAGTAGGAACGAACCATTGGCCATCGGTGATCTGTCCTGTGGG
AACAATGCTCCGTCCTCTCAAGGACGCGTGGTCTAGCAGCCAAGGCATGG
AAAGCATGGTCTAGCAGCCAAGGCATGGAAAGCATGAGTAACCCCCCCCC
CCGCCCTTCATCCATCCCGGTTCTGCATGGATGCGAAGTCAATGGTTTAA
CGAATACGGCATGCACAACTATGAGGTTCCCTCCTCCCCCCTTGATATTG
AAAATGCAAAAAACCCGCGAGCAGGTGATAGAGGCTGAGGGACGATTAGA
AGTATCGCTTCGTGCCCCCAAGCCCCTCGTTCCAATCGTGGACACCTCAA
CCCTCAAGCCGCTCGCGGACCTCAAGCGCGGCGAGGAGCTCACGGGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19750:523..3219-

>mRNA_Ecto-sp13_S_contig19750.6384.1 ID=mRNA_Ecto-sp13_S_contig19750.6384.1|Name=mRNA_Ecto-sp13_S_contig19750.6384.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=555bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19750:523..3219- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACAGACCTCCGGCCACTCTTTGTCCTCTCTCTCTGCTTGCTGTTGGA
CCCATGCGGTTCGTTCTTGCACAGCAGTCGCGGTGTTGGTTGTCTTCGAT
GCCCTCGACTGGTCCAGCGCTCGCCACTTCCTCGCGGTCAGAAGCTCTCC
GCAACGATGTCGTCGGTGGTGGCGGTCGGGCAGGGGAAAGCGAAGCGAGA
GCCGCCCCGTCTGCTCGAGAACTTGGAGGTGGGCGAGAGGTTAAAGGGCG
TGGTGGTGACCGAGCTGGACGGGACAAGCGGCAAGAAGGCGTGGGTGAGA
GTCGGGGTGATGCGGCGCGCCAAGGGGGGCAAGTTCTCGCACGTGGACGG
CATGATCCGGCTGAACAAGGAGAAGGGGCTCAAGCCGAAGAAGGTGGCGA
TCGACAAGCCGGTCACCGTCTACGTCAGCAAGGTGATAGAGGCTGAGGGA
CGATTAGAAGTATCGCTTCGTGCCCCCAAGCCCCTCGTTCCAATCGTGGA
CACCTCAACCCTCAAGCCGCTCGCGGACCTCAAGCGCGGCGAGGAGCTCA
CGGGT
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