mRNA_Ecto-sp13_S_contig19741.6379.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19741.6379.1
Unique NamemRNA_Ecto-sp13_S_contig19741.6379.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19741.6379.1 vs. uniprot
Match: D8LT99_ECTSI (Aureochrome 3 n=5 Tax=Phaeophyceae TaxID=2870 RepID=D8LT99_ECTSI)

HSP 1 Score: 188 bits (478), Expect = 1.880e-54
Identity = 114/120 (95.00%), Postives = 116/120 (96.67%), Query Frame = 1 
Query:    1 LSGMDEDXXXXXXXHGAGGKRGSVSGKRPRQGGRNMTEQQRLDRRERNREHAKRSRVRKKFLLESLQKSVTSLQEENEKLRGAIRSNLGPEEANELLAETETPTTLITSRPGDATKVLLD 360
            +SGMDEDXXXXXXX  AGGKRGSVSGKRPRQGGRNMTEQQRLDRRERNREHAKRSRVRKKFLLESLQKSVTSLQEENEKLRGAIRSNLGPEEA ELLAETETPTTLI+SRPGDATKVL D
Sbjct:    1 MSGMDEDXXXXXXXXXAGGKRGSVSGKRPRQGGRNMTEQQRLDRRERNREHAKRSRVRKKFLLESLQKSVTSLQEENEKLRGAIRSNLGPEEAKELLAETETPTTLISSRPGDATKVLDD 120
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BLAST of mRNA_Ecto-sp13_S_contig19741.6379.1 vs. uniprot
Match: A0A126X2D9_9PHAE (Putative LOV domain-containing protein n=4 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A126X2D9_9PHAE)

HSP 1 Score: 161 bits (407), Expect = 7.340e-44
Identity = 102/120 (85.00%), Postives = 110/120 (91.67%), Query Frame = 1 
Query:    1 LSGMDEDXXXXXXXHGAGGKRGSVSGKRPRQGGRNMTEQQRLDRRERNREHAKRSRVRKKFLLESLQKSVTSLQEENEKLRGAIRSNLGPEEANELLAETETPTTLITSRPGDATKVLLD 360
            +S MDEDXXXXXXX G  GKRGS +GKRPRQGGRNMTEQQRLDRRERNREHAKRSRVRKKFLLESLQKSVTSLQEENEKLRGAIR+NLG EEA ELLA+TE+ ++LI S+PGDATKVL D
Sbjct:    1 MSAMDEDXXXXXXXXGVVGKRGSGTGKRPRQGGRNMTEQQRLDRRERNREHAKRSRVRKKFLLESLQKSVTSLQEENEKLRGAIRANLGAEEAKELLAQTES-SSLIASKPGDATKVLDD 119
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BLAST of mRNA_Ecto-sp13_S_contig19741.6379.1 vs. uniprot
Match: A0A126X307_SARHM (Putative LOV domain-containing protein n=1 Tax=Sargassum hemiphyllum TaxID=127544 RepID=A0A126X307_SARHM)

HSP 1 Score: 148 bits (374), Expect = 2.220e-37
Identity = 92/120 (76.67%), Postives = 101/120 (84.17%), Query Frame = 1 
Query:    1 LSGMDEDXXXXXXXHGAGGKRGSVSGKRPRQGGRNMTEQQRLDRRERNREHAKRSRVRKKFLLESLQKSVTSLQEENEKLRGAIRSNLGPEEANELLAETETPTTLITSRPGDATKVLLD 360
            ++G DED        G  G+RG   GKRPRQGGRNMTEQQRLDRRERNREHAKRSRVRKKFLLESLQKSVT+LQEENEKLRGAIRSNLGPEEA ELL +TET ++LI+S PG+ATKVL D
Sbjct:  182 IAGGDED--------GRQGRRGG--GKRPRQGGRNMTEQQRLDRRERNREHAKRSRVRKKFLLESLQKSVTALQEENEKLRGAIRSNLGPEEAKELLTQTET-SSLISSSPGEATKVLDD 290
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BLAST of mRNA_Ecto-sp13_S_contig19741.6379.1 vs. uniprot
Match: A0A126WZN1_9PHAE (Putative LOV domain-containing protein n=1 Tax=Dictyopteris undulata TaxID=156997 RepID=A0A126WZN1_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 1.840e-36
Identity = 85/103 (82.52%), Postives = 88/103 (85.44%), Query Frame = 1 
Query:   52 GGKRGSVSGKRPRQGGRNMTEQQRLDRRERNREHAKRSRVRKKFLLESLQKSVTSLQEENEKLRGAIRSNLGPEEANELLAETETPTTLITSRPGDATKVLLD 360
            GGKR      RPRQGGRNMTEQQRLDRRERNREHAKRSRVRKKFLLESLQKSVT+LQEENEKLRGAIRSNL  EEA ELL +TET + LI S PGDATKVL D
Sbjct:   38 GGKRSGGGXXRPRQGGRNMTEQQRLDRRERNREHAKRSRVRKKFLLESLQKSVTALQEENEKLRGAIRSNLSAEEAKELLEQTET-SNLIASNPGDATKVLDD 139
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BLAST of mRNA_Ecto-sp13_S_contig19741.6379.1 vs. uniprot
Match: X2CR90_SACJA (Aureochrome2 (Fragment) n=1 Tax=Saccharina japonica TaxID=88149 RepID=X2CR90_SACJA)

HSP 1 Score: 124 bits (311), Expect = 1.390e-30
Identity = 72/85 (84.71%), Postives = 79/85 (92.94%), Query Frame = 1 
Query:  106 MTEQQRLDRRERNREHAKRSRVRKKFLLESLQKSVTSLQEENEKLRGAIRSNLGPEEANELLAETETPTTLITSRPGDATKVLLD 360
            MTEQQRLDRRERNREHAKRSRVRKKFLLESLQKSVT+LQEENEKLRGAIR+NLG +EA ELLA+TE+ ++LI S PGDATKVL D
Sbjct:    1 MTEQQRLDRRERNREHAKRSRVRKKFLLESLQKSVTALQEENEKLRGAIRANLGADEAKELLAQTES-SSLIASNPGDATKVLDD 84
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BLAST of mRNA_Ecto-sp13_S_contig19741.6379.1 vs. uniprot
Match: A0A126X1C8_9PHAE (Putative LOV domain-containing protein n=1 Tax=Sargassum horneri TaxID=74089 RepID=A0A126X1C8_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 1.540e-30
Identity = 72/85 (84.71%), Postives = 80/85 (94.12%), Query Frame = 1 
Query:  106 MTEQQRLDRRERNREHAKRSRVRKKFLLESLQKSVTSLQEENEKLRGAIRSNLGPEEANELLAETETPTTLITSRPGDATKVLLD 360
            MTE+QRLDRRERNREHAKRSRVRKKFLLESLQKSVT+LQEENEKLRGAIR+NLGPEEA ELL +TET ++LI+S PG+ATKVL D
Sbjct:    1 MTEKQRLDRRERNREHAKRSRVRKKFLLESLQKSVTALQEENEKLRGAIRANLGPEEAKELLTQTET-SSLISSSPGEATKVLDD 84
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BLAST of mRNA_Ecto-sp13_S_contig19741.6379.1 vs. uniprot
Match: A0A7S2GCF2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2GCF2_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 6.650e-21
Identity = 57/88 (64.77%), Postives = 73/88 (82.95%), Query Frame = 1 
Query:  100 RNMTEQQRLDRRERNREHAKRSRVRKKFLLESLQKSVTSLQEENEKLRGAIRSNLGPEEANELLAETETPT-TLITSRPGDATKVLLD 360
            RNMTE+Q+++RRERNREHAKRSRVRKKFLLESLQ+SV +LQ+ENEKLR AI+ +L P++A+ LL++  T    LI S P DAT++L D
Sbjct:   14 RNMTEKQKVERRERNREHAKRSRVRKKFLLESLQQSVNALQQENEKLRSAIKEHLNPQQADSLLSQCSTKAGPLIASDPNDATRILDD 101
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BLAST of mRNA_Ecto-sp13_S_contig19741.6379.1 vs. uniprot
Match: A0A126WW60_9STRA (Putative LOV domain-containing protein n=1 Tax=Mallomonas sp. BC-2016 TaxID=1802913 RepID=A0A126WW60_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 4.600e-19
Identity = 59/89 (66.29%), Postives = 72/89 (80.90%), Query Frame = 1 
Query:  100 RNMTEQQRLDRRERNREHAKRSRVRKKFLLESLQKSVTSLQEENEKLRGAIRSNLGPEEANELLAETET--PTTLITSRPGDATKVLLD 360
            RNMTE+Q+++RRERNREHAKRSRVRKKFLLESLQ+SV +LQ+ENEKLRGAIR +L P EA ELL+      P ++I  RP +AT+ L D
Sbjct:  119 RNMTEEQKVERRERNREHAKRSRVRKKFLLESLQQSVQALQDENEKLRGAIREHL-PTEAEELLSTCSQTGPGSIIADRPDEATRTLDD 206
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BLAST of mRNA_Ecto-sp13_S_contig19741.6379.1 vs. uniprot
Match: W7TTA1_9STRA (Aureochrome1-like protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TTA1_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 8.990e-19
Identity = 58/87 (66.67%), Postives = 71/87 (81.61%), Query Frame = 1 
Query:  106 MTEQQRLDRRERNREHAKRSRVRKKFLLESLQKSVTSLQEENEKLRGAIRSNLGPEEANELL--AETETPTTLITSRPGDATKVLLD 360
            MTE+Q+++RRERNREHAKRSRVRKKFLLESLQKSV +LQEEN+KLRGAIRS+L  E A++LL   E E   +++ S P  ATK+L D
Sbjct:    1 MTEEQKVERRERNREHAKRSRVRKKFLLESLQKSVNALQEENDKLRGAIRSHL-KEGADDLLKTCEVEVDESILASDPCSATKILDD 86
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BLAST of mRNA_Ecto-sp13_S_contig19741.6379.1 vs. uniprot
Match: A0A7S1UCA1_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UCA1_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 2.160e-18
Identity = 56/89 (62.92%), Postives = 71/89 (79.78%), Query Frame = 1 
Query:   94 GGRNMTEQQRLDRRERNREHAKRSRVRKKFLLESLQKSVTSLQEENEKLRGAIRSNLGPEEANELLAETETPTTLITSRPGDATKVLLD 360
            GGRNMTE+Q+L+RRERNREHAKRSRVRKKFLLESLQKSV +LQ EN +LR AIR  + P+EA ++L  TE   +L+ +   +AT++L D
Sbjct:  106 GGRNMTEEQKLERRERNREHAKRSRVRKKFLLESLQKSVDALQAENLRLRAAIREQI-PDEAEDVLRATELRDSLLANSAAEATQILDD 193
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19741.6379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LT99_ECTSI1.880e-5495.00Aureochrome 3 n=5 Tax=Phaeophyceae TaxID=2870 RepI... [more]
A0A126X2D9_9PHAE7.340e-4485.00Putative LOV domain-containing protein n=4 Tax=Scy... [more]
A0A126X307_SARHM2.220e-3776.67Putative LOV domain-containing protein n=1 Tax=Sar... [more]
A0A126WZN1_9PHAE1.840e-3682.52Putative LOV domain-containing protein n=1 Tax=Dic... [more]
X2CR90_SACJA1.390e-3084.71Aureochrome2 (Fragment) n=1 Tax=Saccharina japonic... [more]
A0A126X1C8_9PHAE1.540e-3084.71Putative LOV domain-containing protein n=1 Tax=Sar... [more]
A0A7S2GCF2_9STRA6.650e-2164.77Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A126WW60_9STRA4.600e-1966.29Putative LOV domain-containing protein n=1 Tax=Mal... [more]
W7TTA1_9STRA8.990e-1966.67Aureochrome1-like protein n=3 Tax=Monodopsidaceae ... [more]
A0A7S1UCA1_9STRA2.160e-1862.92Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19741contigEcto-sp13_S_contig19741:159..2398 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score186.0
Seed ortholog evalue1.1e-44
Seed eggNOG ortholog2880.D8LT99
Model size1008
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.PAS domain
EggNOG OGs2BEDG@1,2S14J@2759
Cds size390
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462996.7647913-UTR-Ecto-sp13_S_contig19741:158..7671681462996.7647913-UTR-Ecto-sp13_S_contig19741:158..767Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19741 159..767 -
1681462996.8142421-UTR-Ecto-sp13_S_contig19741:2389..23981681462996.8142421-UTR-Ecto-sp13_S_contig19741:2389..2398Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19741 2390..2398 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462996.7818577-CDS-Ecto-sp13_S_contig19741:767..10321681462996.7818577-CDS-Ecto-sp13_S_contig19741:767..1032Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19741 768..1032 -
1681462996.7989254-CDS-Ecto-sp13_S_contig19741:2264..23891681462996.7989254-CDS-Ecto-sp13_S_contig19741:2264..2389Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19741 2265..2389 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19741.6379.1prot_Ecto-sp13_S_contig19741.6379.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19741 768..2389 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19741.6379.1

>prot_Ecto-sp13_S_contig19741.6379.1 ID=prot_Ecto-sp13_S_contig19741.6379.1|Name=mRNA_Ecto-sp13_S_contig19741.6379.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=130bp
MDEDDDEDEDDHGAGGKRGSVSGKRPRQGGRNMTEQQRLDRRERNREHAK
RSRVRKKFLLESLQKSVTSLQEENEKLRGAIRSNLGPEEANELLAETETP
TTLITSRPGDATKVLLDFLSFLLFLDVLR*
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mRNA from alignment at Ecto-sp13_S_contig19741:159..2398-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19741.6379.1 ID=mRNA_Ecto-sp13_S_contig19741.6379.1|Name=mRNA_Ecto-sp13_S_contig19741.6379.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2240bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19741:159..2398- (Ectocarpus species13 EcNAP12_S_4_19m)
CTGTCGGGGATGGACGAGGACGACGATGAGGACGAGGACGACCACGGGGC
CGGGGGAAAGCGAGGCTCCGTTAGCGGGAAGCGGCCCCGGCAGGGAGGGA
GGAATATGACGGAGCAGCAAAGACTTGATCGGAGGTGTGTAAGCATGCAA
GTTATTTTTTTCGCCTGTACGTGATAGATGGGACGAACACACGAAGACAC
ACACACACACAAACGTGATGTGCGTCTTGCTTTTGTGCTCGCGGGTAGTT
CGTTTTTTTTGCCTCTTGCGAAAGCGGAGAGTTAGGTAGGTAGGCCAGGA
CGAGTGCTGCTCTCGGAATGGTTGGAGTTACTGGGTGTTTCGCGTGGGTT
GACTCTGGTGTGTGATGGACGAGGCTGGTCCTGTCTGATCGTTCTGCCCC
TTCTCGCTGCAGGTACTGCCTGTACCTCACGTTCACTGTCGCACAATAGT
AGCGATTTCTGAGAAGCTTCCCTTTCCGGTTCTCGCTCGTGAGTCGTCGT
GCTTTTGTAAACCAAGCAGTACGGTACGTACACAGGACATCACAGAACCA
CCCAAAAAATGGAGTATCACGGTAGAATGTTCGGCCGTCTTGCTTGTTGC
CACGGCCTTCGCAAATACTTGAAACGAGCCACCTCTCTTCGGGTAAGTGG
ACACCCCCGCCTCTTCCTAGAACACCAACTGGTGTTCGTTTTTGTTCTAC
GTGTGCGAGCGCGCTTTTGCGCTCTTTTTCTCTGTCGCTCCTCCTAGCTG
TCACGTTGTGCTACCGCTTGATTACCACGGACGACTGACGTTTTCAGACG
AGCTACCTGTTGATAGGCATGTCCTAGTGAAAGACACCGTCATCAACATC
TTGAGGAAGGGTAGCAGCAGCAGCAGCAGCAGTATGACAACACTGCTTGT
TGTATGTAGCGTCCCGTCGGCCTCTCTCTCGGCTCCCGTTCGTTCCCACT
ACTTGCGGAGCACCCGGCAGAGCGGTACCAACTCGCTGACTGTCGTTGCA
GCACGCTCTCTCGCGTGCGCGTGTTGTTTTTCTCTTGACCTTTTATTATG
TTGCCGACCGTGCGAGTAGCTGATGCCGGGATGCGGATGTGTGTCCATCG
GCGTCGTTGAAGCAATCGCTTGGACTCGTAGAAGAACCACAGAGAAGGGC
GAGGGCCGGAAGTAGTGGTCGCCTTTCCTCTGTTGCGTAGTCCTTTTCTC
GTTCACTCAGCTTATTCTGCTGTATCTGTTGTCTCTCTCTACCTGCGTAA
CTCTCCTGCTCCTGTGTGTCTCTTTTGTCTCCTCTAAAGGCACCAACTGC
TGTGTGCACGGTACCCCATTTCACCCCTAACCCTCCCAACAACAACAACA
ACCGCTTTCTCGACAGAGAGCGCAACCGGGAGCACGCAAAGCGGTCGCGC
GTTCGCAAGAAGTTCCTCCTGGAGTCGCTGCAGAAGAGCGTGACGTCGCT
ACAGGAGGAGAACGAGAAACTCAGGGGGGCGATCCGCTCCAACCTGGGTC
CGGAAGAGGCAAACGAGCTCCTCGCGGAGACGGAGACGCCCACGACCCTC
ATCACCAGTAGACCAGGAGATGCCACGAAGGTGTTACTTGACTTTTTGTC
ATTTCTGCTGTTCCTTGATGTTTTGCGCTGATTTTTTTTTTACCACACAC
ACACAAACACACACACACATACACACACGGAAAGATCCGACTCTCTCTCG
CGCGCGCTCTTCGTATTGTCTGTTTTTTAGCCAGCCGAGAGCAACCAGGA
GCAAGGAAATGCCTCTGCCGCTGTGTTCGCAGTGTTGTAGTTTTAACGGT
GTAGTTTTAGTGGTAGTTTGAGGGCCGGGGAGGTGGGTAGATGGGATTTG
TGGCATGGGCATGTGCGCTTCCTCTGTCCATCGCTTGCTGGGTGGGTGGC
GGCGGCGGCAGCGGCAGCAAGTCTTCTTATATGTAGATTCAGTGGCAGTG
GTCCTCCAACAATGAGTGGGGTTATACGCGCGCATGTGCTTTTGCTGCCT
GCGTTGTTGTTATTGGCGACAGCGGTTAGCCGTCACGACGTTGTTTCTAT
TTCTTATGTCTTCAGAGGCACGACCACCACTGCTTCGGTAAGCAACCGGA
CGAAAAAATTTCGCTTTACTTTCGAGGCAAACCGGCCTTCTGTTGTTCAC
CAACCAATCATCGTCATCAGTCGTGTGCGCATACACCGAGATTTTTTTTT
CCCTTTCGGGGCCAGTTTCTGCACACCCACCCGAAGACCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19741:159..2398-

>mRNA_Ecto-sp13_S_contig19741.6379.1 ID=mRNA_Ecto-sp13_S_contig19741.6379.1|Name=mRNA_Ecto-sp13_S_contig19741.6379.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=390bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19741:159..2398- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACGAGGACGACGATGAGGACGAGGACGACCACGGGGCCGGGGGAAA
GCGAGGCTCCGTTAGCGGGAAGCGGCCCCGGCAGGGAGGGAGGAATATGA
CGGAGCAGCAAAGACTTGATCGGAGAGAGCGCAACCGGGAGCACGCAAAG
CGGTCGCGCGTTCGCAAGAAGTTCCTCCTGGAGTCGCTGCAGAAGAGCGT
GACGTCGCTACAGGAGGAGAACGAGAAACTCAGGGGGGCGATCCGCTCCA
ACCTGGGTCCGGAAGAGGCAAACGAGCTCCTCGCGGAGACGGAGACGCCC
ACGACCCTCATCACCAGTAGACCAGGAGATGCCACGAAGGTGTTACTTGA
CTTTTTGTCATTTCTGCTGTTCCTTGATGTTTTGCGCTGA
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