mRNA_Ecto-sp13_S_contig19739.6376.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig19739.6376.1 vs. uniprot
Match: D7G5U2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5U2_ECTSI) HSP 1 Score: 115 bits (288), Expect = 8.200e-29 Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 1
Query: 4 QYVLIRLVSTAVALALQLGHLYTEGDFDPKRGYLWITVVTCCSQSWALYVLVLFY 168
QYVLIRLVSTAVALALQLGHLYTEGDFDPKRGYLWITVVTCCSQSWALYVLVLFY
Sbjct: 233 QYVLIRLVSTAVALALQLGHLYTEGDFDPKRGYLWITVVTCCSQSWALYVLVLFY 287
BLAST of mRNA_Ecto-sp13_S_contig19739.6376.1 vs. uniprot
Match: A0A7S2XZN0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZN0_9STRA) HSP 1 Score: 67.4 bits (163), Expect = 1.450e-12 Identity = 28/55 (50.91%), Postives = 41/55 (74.55%), Query Frame = 1
Query: 4 QYVLIRLVSTAVALALQLGHLYTEGDFDPKRGYLWITVVTCCSQSWALYVLVLFY 168
QYV+ R+V+T +A+ ++ LY EG++ P G+ W+T+ C SQ+WALYVLVLFY
Sbjct: 6 QYVVCRVVTTVMAVGMEPFGLYREGEYHPATGFFWVTLANCLSQTWALYVLVLFY 60
BLAST of mRNA_Ecto-sp13_S_contig19739.6376.1 vs. uniprot
Match: K8Z680_NANGC (Transmembrane protein 184c n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z680_NANGC) HSP 1 Score: 63.9 bits (154), Expect = 1.570e-10 Identity = 26/55 (47.27%), Postives = 39/55 (70.91%), Query Frame = 1
Query: 4 QYVLIRLVSTAVALALQLGHLYTEGDFDPKRGYLWITVVTCCSQSWALYVLVLFY 168
QY+ +RL + + AL+ LY EG++ +RG+ W+TV C SQ+WALY+L+LFY
Sbjct: 174 QYLGVRLATLVLTFALESLDLYAEGEYTVRRGFFWMTVANCISQTWALYILILFY 228
BLAST of mRNA_Ecto-sp13_S_contig19739.6376.1 vs. uniprot
Match: W7U0S2_9STRA (Signal recognition particle-docking protein FtsY n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U0S2_9STRA) HSP 1 Score: 63.9 bits (154), Expect = 1.710e-10 Identity = 26/55 (47.27%), Postives = 39/55 (70.91%), Query Frame = 1
Query: 4 QYVLIRLVSTAVALALQLGHLYTEGDFDPKRGYLWITVVTCCSQSWALYVLVLFY 168
QY+ +RL + + AL+ LY EG++ +RG+ W+TV C SQ+WALY+L+LFY
Sbjct: 769 QYLGVRLATLVLTFALESLDLYAEGEYTVRRGFFWMTVANCISQTWALYILILFY 823
BLAST of mRNA_Ecto-sp13_S_contig19739.6376.1 vs. uniprot
Match: A0A4D9DA43_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DA43_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 5.930e-10 Identity = 25/55 (45.45%), Postives = 38/55 (69.09%), Query Frame = 1
Query: 4 QYVLIRLVSTAVALALQLGHLYTEGDFDPKRGYLWITVVTCCSQSWALYVLVLFY 168
QY+ +RL + AL+ +Y EG++ +RG+ W+TV C SQ+WALY+L+LFY
Sbjct: 227 QYLGVRLATLVFTFALESLDMYAEGEYTVRRGFFWMTVANCISQTWALYILILFY 281
BLAST of mRNA_Ecto-sp13_S_contig19739.6376.1 vs. uniprot
Match: A0A1E7FR84_9STRA (DUF300-domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FR84_9STRA) HSP 1 Score: 54.7 bits (130), Expect = 2.610e-7 Identity = 25/55 (45.45%), Postives = 35/55 (63.64%), Query Frame = 1
Query: 4 QYVLIRLVSTAVALALQLGHLYTEGDFDPKRGYLWITVVTCCSQSWALYVLVLFY 168
QYVL++ + T L+ LY EG F K GYL+I++VT SQ+WA+Y + FY
Sbjct: 132 QYVLLKFILTIAVFILERNGLYKEGVFSYKGGYLYISIVTNLSQTWAIYCFLFFY 186
BLAST of mRNA_Ecto-sp13_S_contig19739.6376.1 vs. uniprot
Match: A0A835YQ95_9STRA (Organic solute transporter Ostalpha-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ95_9STRA) HSP 1 Score: 53.1 bits (126), Expect = 1.080e-6 Identity = 27/55 (49.09%), Postives = 38/55 (69.09%), Query Frame = 1
Query: 4 QYVLIRLVSTAVALALQLGHLYTEGDFDPKRGYLWITVVTCCSQSWALYVLVLFY 168
Q+++IR+ ST VAL +QL +G + G++ +T V CCSQ WALYVL+LFY
Sbjct: 286 QFLIIRVASTLVALYVQLVQRL-QGHGASQAGHMVVTAVVCCSQMWALYVLLLFY 339
BLAST of mRNA_Ecto-sp13_S_contig19739.6376.1 vs. uniprot
Match: A0A6J1HVC8_CUCMA (protein LAZ1-like isoform X2 n=4 Tax=Cucurbita TaxID=3660 RepID=A0A6J1HVC8_CUCMA) HSP 1 Score: 52.8 bits (125), Expect = 1.310e-6 Identity = 26/56 (46.43%), Postives = 40/56 (71.43%), Query Frame = 1
Query: 1 VQYVLIRLVSTAVALALQLGHLYTEGDFDPKRGYLWITVVTCCSQSWALYVLVLFY 168
VQY++I+ +++ +A+ L+ +Y EGDF+ K GY ++ VV SQSWALY L+ FY
Sbjct: 154 VQYMMIKSLTSILAVVLENFGVYCEGDFNFKCGYPYMAVVLNFSQSWALYCLIQFY 209
BLAST of mRNA_Ecto-sp13_S_contig19739.6376.1 vs. uniprot
Match: A0A7J7KCC7_BUGNE (Uncharacterized protein n=2 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7KCC7_BUGNE) HSP 1 Score: 52.8 bits (125), Expect = 1.440e-6 Identity = 26/55 (47.27%), Postives = 37/55 (67.27%), Query Frame = 1
Query: 4 QYVLIRLVSTAVALALQLGHLYTEGDFDPKRGYLWITVVTCCSQSWALYVLVLFY 168
Q+ +++ V V + LQ LY++G+F PK+GYL+IT+V S S ALY L LFY
Sbjct: 77 QFCVVKPVMAIVTIVLQSCDLYSDGNFTPKKGYLYITIVYNISISLALYALFLFY 131
BLAST of mRNA_Ecto-sp13_S_contig19739.6376.1 vs. uniprot
Match: A0A2U1MPF8_ARTAN (Organic solute transporter Ost-alpha n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1MPF8_ARTAN) HSP 1 Score: 52.0 bits (123), Expect = 2.790e-6 Identity = 24/56 (42.86%), Postives = 40/56 (71.43%), Query Frame = 1
Query: 1 VQYVLIRLVSTAVALALQLGHLYTEGDFDPKRGYLWITVVTCCSQSWALYVLVLFY 168
VQY++I+ +++ +A+ L+ +Y EG+F+ + GY ++ VV SQ+WALY LV FY
Sbjct: 227 VQYMIIKALTSVLAVVLEAFDVYCEGEFNWRCGYPYVAVVLNFSQTWALYCLVQFY 282 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19739.6376.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig19739.6376.1 >prot_Ecto-sp13_S_contig19739.6376.1 ID=prot_Ecto-sp13_S_contig19739.6376.1|Name=mRNA_Ecto-sp13_S_contig19739.6376.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=56bp VQYVLIRLVSTAVALALQLGHLYTEGDFDPKRGYLWITVVTCCSQSWALYback to top mRNA from alignment at Ecto-sp13_S_contig19739:2576..2743- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig19739.6376.1 ID=mRNA_Ecto-sp13_S_contig19739.6376.1|Name=mRNA_Ecto-sp13_S_contig19739.6376.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19739:2576..2743- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19739:2576..2743- >mRNA_Ecto-sp13_S_contig19739.6376.1 ID=mRNA_Ecto-sp13_S_contig19739.6376.1|Name=mRNA_Ecto-sp13_S_contig19739.6376.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19739:2576..2743- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |