mRNA_Ecto-sp13_S_contig19683.6350.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19683.6350.1
Unique NamemRNA_Ecto-sp13_S_contig19683.6350.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig19683.6350.1 vs. uniprot
Match: A0A6H5L9A2_9PHAE (Fe-ADH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L9A2_9PHAE)

HSP 1 Score: 573 bits (1477), Expect = 7.180e-204
Identity = 303/317 (95.58%), Postives = 309/317 (97.48%), Query Frame = 1
Query:    1 SGQQVVAQVSRHGRTCLAIADDNTPGQSAGRCLFELRKAGINCAMFTGRGAYPTADGIDEAREMARRIGATCIVSVGRGGTIDTAKAAARLHSSSGGCKQFLTSPGGVLMGEGGNSKPRTPAGNALPLVAIPTSAGAGAAANGRCLVWHPDDEVLVPLAEEGESLTVALVDPILCASLSKTQTAAMALTALSSCVDALLARELALASGTPLQNGDALLDLGRRGIGAVAEGLPVALADGKNKLARELLTIGSVCAGQLAVATPAPPTQLVARATGSLLGRHSYPSVCAMVFPHVVADMLSQANSFSGDVEAAEAIER 951
            S  +VVAQVSRHGRTCLAIADDNTPGQ+ GRCLFELRKAGINCAMFTGRGAYPTADGIDEAREMARRIGATCIVSVGRGGTIDTAKAAARLHSSSGGCKQFLTSPGGVLMGE G+SKPRTPAGNALPLVAIPTSAGAGAAANGRCLVWHPDDEVLVPLAEEGESLTVALVDPILC SLSK+QTAAMALTALS+CVDALLARELALASGTPLQNGDALLDLGRRGI AVAEGLPVALADGKNKLARELLTIGSVCAGQLAVATPAPPTQLVARATGSLLGRHSYPSVCAMVFPHVV DMLSQANSFSGD +AAEAIER
Sbjct:   29 SWTKVVAQVSRHGRTCLAIADDNTPGQAVGRCLFELRKAGINCAMFTGRGAYPTADGIDEAREMARRIGATCIVSVGRGGTIDTAKAAARLHSSSGGCKQFLTSPGGVLMGEDGHSKPRTPAGNALPLVAIPTSAGAGAAANGRCLVWHPDDEVLVPLAEEGESLTVALVDPILCTSLSKSQTAAMALTALSACVDALLARELALASGTPLQNGDALLDLGRRGIDAVAEGLPVALADGKNKLARELLTIGSVCAGQLAVATPAPPTQLVARATGSLLGRHSYPSVCAMVFPHVVGDMLSQANSFSGDAQAAEAIER 345          
BLAST of mRNA_Ecto-sp13_S_contig19683.6350.1 vs. uniprot
Match: A0A836CAW8_9STRA (Iron-containing alcohol dehydrogenase-domain containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAW8_9STRA)

HSP 1 Score: 177 bits (450), Expect = 1.080e-48
Identity = 121/290 (41.72%), Postives = 162/290 (55.86%), Query Frame = 1
Query:   37 GRTCLAIADDNTPGQSAGRCLFELRKAGINCAMFTGRGAYPTADGIDEAREMARRIGATCIVSVGRGGTIDTAKAAARLHSSSGGCKQFLTSPGGVLMGEGGNSKPRTP-AGNALPLVAIPTSAGAGAAANGRCLVWHPDDEVLVPLAEEGESLT-VALVDPILCASLSKTQTAAMALTALSSCVDALLARELALASGTPLQNGDALLDLGRRGIGAVAEGLPVALADGK--NKLAREL-LTIGSVCAGQLAVATPAPPTQLVARATGSLLGRHSYPSVCAMVFPHVVAD 891
            G+  +     N    SA R LFE+RKAG++C  +T +  YPTA GIDE   MA+RIGA  +V +GRGG +DTAKA A L  + G C+ FL SP   ++G  G S+ +   +  A+P VA+P+  G  AA +    V HP+D +LVP+      +  VALVDP+L ASL +T   +MA+ AL++CVDALL    A           AL      GI A+A GLP A A     N  A+ L L   S+ AG    AT APP Q +A A GSLL    Y  + A +FPH +++
Sbjct:   71 GKGLVVHGGSNRAQASAQRILFEIRKAGVDCTTYTVKDLYPTAPGIDEGLSMAKRIGAMSVVGLGRGGVVDTAKAIAALVGTKGKCQHFLESPSDGVLGSSGTSQSKAAYSAAAIPCVAVPSGIGVSAATSPSVHVLHPEDGLLVPMKRHHSLVPRVALVDPLLTASLRETTALSMAVAALAACVDALLVATRAADQDAEASRRQALA---LEGIRAIATGLPAAAAAATALNDSAQRLELVRASIAAGTAVGATAAPPMQTIAMAAGSLLPLTPYSELVASLFPHFLSE 357          
BLAST of mRNA_Ecto-sp13_S_contig19683.6350.1 vs. uniprot
Match: E1JTK4_SOLFR (Iron-containing alcohol dehydrogenase n=1 Tax=Solidesulfovibrio fructosivorans JJ] TaxID=596151 RepID=E1JTK4_SOLFR)

HSP 1 Score: 89.7 bits (221), Expect = 1.510e-16
Identity = 90/294 (30.61%), Postives = 134/294 (45.58%), Query Frame = 1
Query:   10 QVVAQVSRHGRTCLAIADDNTPGQSAGRCLFELRKAGINCAMFTGRGAYPTADGIDEAREMARRIGATCIVSVGRGGTIDTAKAAARLHSSSGGCKQFLTSPGGVLMGEGGNSKPRTPAGNALPLVAIPTSAGAGAAANGRCLVWHPDDEVLVPLAEEGESLTVALVDPILCASLSKTQTAAMALTALSSCVDALLARELALASGTPLQNGDALLDLGRRGIGAVAEGLPVALADGKNKLARELLTIGSVCAGQLAVATPAPPTQLVARATGSLLGR-HSYPSVCAMVFPHVVA 888
            Q+   ++ HGR  L +         A   L  LR+AG+   +F   G  P  +       +AR  G   +V +G GG +DTAKA A L +++     +L      ++G+G   +P T     LP +A+PT+AG GA A    ++  P+  V V L        VALVDP+L A++    TAA  L AL+  +++ ++ +       P+   DAL    R G+   A GL  A ADG +  ARE + + S+  G              A   G L G  H +  VCA + P V A
Sbjct:   20 QLPEHIAAHGRAPLIVTGATPERHQA--LLKALRQAGLTVTVFPVAGE-PAVETAATGARLAREAGCDVVVGIGGGGALDTAKAVAALATNTAEILTYLE-----VVGQG---RPLTE--RPLPCIAVPTTAGTGAEATANAVLTVPEARVKVSLRSAMMLPEVALVDPLLSATMPPAVTAATGLDALTQLLESFVSDK-----ANPMT--DALC---REGLPRAARGLAAAYADGNDLQAREDMALASLLGGMALANAKLGAVHGFAAPIGGLFGAPHGF--VCASLLPFVTA 288          
BLAST of mRNA_Ecto-sp13_S_contig19683.6350.1 vs. uniprot
Match: UPI0009FE2573 (iron-containing alcohol dehydrogenase n=1 Tax=Solidesulfovibrio alcoholivorans TaxID=81406 RepID=UPI0009FE2573)

HSP 1 Score: 83.2 bits (204), Expect = 3.300e-14
Identity = 89/296 (30.07%), Postives = 130/296 (43.92%), Query Frame = 1
Query:    1 SGQQVVAQVSRHGRTCLAIADDNTPGQSAGRCLFELRKAGINCAMFTGRGAYPTADGIDEAREMARRIGATCIVSVGRGGTIDTAKAAARLHSSSGGCKQFLTSPGGVLMGEGGNSKPRTPAGNALPLVAIPTSAGAGAAANGRCLVWHPDDEVLVPLAEEGESLTVALVDPILCASLSKTQTAAMALTALSSCVDALLARELALASGTPLQNGDALLDLGRRGIGAVAEGLPVALADGKNKLARELLTIGSVCAGQLAVATPAPPTQLVARATGSLLGRHSYPSVCAMVFPHVVA 888
            + +Q+   V+R GR  L +   +   Q  G  L  LR AG+   ++   G  P  D       +AR  G   ++ +G GG +DTAKA A L ++      +L      ++G G   +P T     LPL A PT+AG GA A    ++  P+  V V L        +ALVDP+L AS+    TAA  L AL+  ++A ++         P+        L R G+   A  LP+A ADG +  ARE + + S+  G              A   G L     +  VCA + P V A
Sbjct:   17 TARQLPEHVARRGRAPLVVTGASP--QRHGALLDALRAAGLAVTVYPVAGE-PGVDTAAAGARLAREAGCDLVLGLGGGGALDTAKAVAALATNREDVFNYLE-----VVGAG---RPLTT--RPLPLFAAPTTAGTGAEATANAVLTVPEARVKVSLRSPMLLPELALVDPLLSASMPPAVTAATGLDALTQLLEAFVS-----VKANPMTGA-----LCREGLRRAALALPMAYADGADLAAREDMALASLWGGMALANAKLGAVHGFAAPLGGLFDA-PHGQVCASLLPFVTA 288          
BLAST of mRNA_Ecto-sp13_S_contig19683.6350.1 vs. uniprot
Match: A0A7C4R5N7_9DELT (Iron-containing alcohol dehydrogenase n=1 Tax=Desulfobacteraceae bacterium TaxID=2049433 RepID=A0A7C4R5N7_9DELT)

HSP 1 Score: 81.3 bits (199), Expect = 1.610e-13
Identity = 94/282 (33.33%), Postives = 129/282 (45.74%), Query Frame = 1
Query:   49 LAIADDNTPGQSAGRCLFELRKAGINCAMFTGRGAYPTADGIDEAREMARRIGATCIVSVGRGGTIDTAKAAARLHSSSGGCKQFLTSPGGVLMGEGGNSKPRTPAGNALPLVAIPTSAGAGAAANGRCLVWHPDDEVLVPLAEEGESLTVALVDPILCASLSKTQTAAMALTALSSCVDALLARELALASGTPLQNGDALLDLGRRGIGAVAEGLPVALADGKNKLARELLTIGSVCAGQLAVATPAPPTQLVARATGSLLGRHSYP--SVCAMVFPHVVA 888
            L +    TPG++A   L  L   G     F  RG  PT + +  A E AR  GA  +V++G G  IDTAKA +   ++ G    FL    G+     G  KP    G  LP VA+PT+AG+GA A    ++  P     V L        +A+VDP L   L    TAA  + AL+  ++A ++R        PL   DAL    R GI   A  LPVA+ADG ++ ARE + + S+  G   +A        V    G   G  + P  +VC  + P V A
Sbjct:   76 LFVVTGATPGRAA-FLLEALALRGCAVKAFAVRGE-PTLETVGVALEEARAWGAEALVAIGGGAVIDTAKAVSGWCTNPGDPLDFLE---GI-----GKGKPLERPG--LPWVAVPTTAGSGAEATRNAVIRVPARRAKVSLRSPHLLPRLAVVDPELTLELPPAVTAATGMDALAQLLEAFVSRR-----ANPLT--DALC---REGIPRAARALPVAVADGSDRRAREAMALASLFGG---IALANAGLGAVHGLAGPFGGMAAAPHGAVCGRLLPAVTA 332          
BLAST of mRNA_Ecto-sp13_S_contig19683.6350.1 vs. uniprot
Match: A0A2R6GGT4_9EURY (Alcohol dehydrogenase n=3 Tax=unclassified Halobacteriales TaxID=38063 RepID=A0A2R6GGT4_9EURY)

HSP 1 Score: 79.0 bits (193), Expect = 8.680e-13
Identity = 80/255 (31.37%), Postives = 119/255 (46.67%), Query Frame = 1
Query:   10 QVVAQVSRHGRTCLAIADDNTPGQSAGRCLFELRKAGINCAMFTGRGAYPTADGIDEAREMARRIGATCIVSVGRGGTIDTAKAAARLHSSSGGCKQFLTSPGGVLMGEGGNSKPRTPAGNALPLVAIPTSAGAGAAANGRCLVWHPDDEVLVPLAEEGESL-TVALVDPILCASLSKTQTAAMALTALSSCVDALLARELALASGTPLQNGDALLDLGRRGIGAVAEGLPVALADGKNKLARELLTIGSVCAGQ 771
            +V  ++   G T L +A     G+   R    L  AGI+ A++      PT + + EA E  R  G  C+V++G G  IDTAKA   L ++ G  +++     G    EG       PA +  PL A+PT+AG G+ A  R +V   +      L    E L TVA+ DP L A+L  + TA   + AL+  ++A ++      S T          L R  I  V   LP + A+G +  ARE + +G + AGQ
Sbjct:   22 EVGDRLGERGSTALIVATGGVFGRYGDRVRDSLAAAGIDAAVYDEVRPDPTVENVREALETYRASGCDCLVALGGGSPIDTAKAVGVLAANGGEIREYAVDRAGY---EG------VPA-SIPPLAAVPTTAGTGSEAT-RSIVISDESTATKFLVVSTEVLPTVAVEDPELVATLPPSHTAFTGVDALTHAIEAYVSVHAWSMSDT----------LARAAIERVGTALPASWANGDDLDAREAMLVGQLQAGQ 255          
BLAST of mRNA_Ecto-sp13_S_contig19683.6350.1 vs. uniprot
Match: A0A7V2N505_9BACT (Iron-containing alcohol dehydrogenase n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7V2N505_9BACT)

HSP 1 Score: 77.8 bits (190), Expect = 2.000e-12
Identity = 88/301 (29.24%), Postives = 130/301 (43.19%), Query Frame = 1
Query:    1 SGQQVVAQVSRHGRTCLAIADDNTPGQSAGRCLFELRKAGINCAMFTGRGAYPTADGIDEAREMARRIGATCIVSVGRGGTIDTAKAAARLHSSSGGCKQFLTSPGGVL-----MGEGGNSKPRTPAGNALPLVAIPTSAGAGAAANGRCLVWHPDDEVLVPLAEEGESLTVALVDPILCASLSKTQTAAMALTALSSCVDALLARELALASGTPLQNGDALLDLGRRGIGAVAEGLPVALADGKNKLARELLTIGSVCAGQLAVATPAPPTQLVARATGSLLGRHSYPSVCAMVFPHVVA 888
            + QQ+ A     GR+ L +         A   L  + + G   A  +  G  PT  G+      AR  G   ++++G G  ID  KA A +          LT+PG +L     +G G     R  A   +PLVA+ T+AGAGA      ++  PD +V V +       TVALVDP L AS+    TAA  L AL+  ++A + R+       PL +G       R G+   A  L  A ADG +  AR  +++ ++  G              A   G ++    +  +CA + PHVVA
Sbjct:   20 AAQQLPALAGPLGRSALVLTGSRPDRYEA--ILRPMEETGCIRARRSV-GGEPTTSGVQALAAEARDAGVDHVIAIGGGSVIDAGKAVAAM----------LTNPGDLLDYLEVVGRG-----RALAHRPVPLVAVSTTAGAGAEVTRNAVLKVPDRQVKVSMRHAWLLPTVALVDPELTASMPPEVTAATGLDALTQLLEAFVGRK-----ANPLTDGFC-----REGLSRAARSLERAWADGGDLTARTDMSLAALLGGMALANAGLGAVHGFAGPLGGII-EAPHGVICARLLPHVVA 291          
BLAST of mRNA_Ecto-sp13_S_contig19683.6350.1 vs. uniprot
Match: A0A841L4T5_9CLOT (Alcohol dehydrogenase n=1 Tax=Anaerosolibacter carboniphilus TaxID=1417629 RepID=A0A841L4T5_9CLOT)

HSP 1 Score: 75.1 bits (183), Expect = 1.530e-11
Identity = 64/221 (28.96%), Postives = 103/221 (46.61%), Query Frame = 1
Query:  103 ELRKAGINCAMFTGRGAYPTADGIDEAREMARRIGATCIVSVGRGGTIDTAKAAARLHSSSGGCKQFLTSPGGVLMGEGGNSKPRTPAGNALPLVAIPTSAGAGAAANGRCLVWHPDDEVLVPLAEEGESLTVALVDPILCASLSKTQTAAMALTALSSCVDALLARELALASGTPLQNGDALLDLGRRGIGAVAEGLPVALADGKNKLARELLTIGSVCA 765
            +L   GI   +F G    P  + +D+ R M        +V +G G  +D AKAAA L+  +    ++L            N +P    G  +P VAIPT+AG G+      +++HP+      LA  G     ++VDP+L  S++   TA   + AL+  V+          S T        + +  + I  +AEGLP+A+ DG +K+AR  + +GS+ A
Sbjct:   53 DLEYYGIKHYVFDGIYGEPDTEMVDQVRRMIEEEKIDFVVGLGGGSALDVAKAAAGLYGQNLPTAEYL------------NQRPFEYQG--IPFVAIPTTAGTGSEITLNAVLYHPELGNKNSLAHPGFQSKCSIVDPVLTYSMAPEITAMTGMDALTHAVE----------SYTSKMANPVTMAMAGKAISLIAEGLPMAVKDGSDKMARSKMALGSMMA 249          
BLAST of mRNA_Ecto-sp13_S_contig19683.6350.1 vs. uniprot
Match: UPI0009756A41 (iron-containing alcohol dehydrogenase n=1 Tax=Bradyrhizobium mercantei TaxID=1904807 RepID=UPI0009756A41)

HSP 1 Score: 74.7 bits (182), Expect = 2.200e-11
Identity = 71/244 (29.10%), Postives = 110/244 (45.08%), Query Frame = 1
Query:   40 RTCLAIADDNTPGQS-AGRCLFELRKAGINCAMFTGRGAYPTADGIDEAREMARRIGATCIVSVGRGGTIDTAKAAARLHSSSGGCKQFLTSPGGVLMGEGGNSKPRTPAGNALPLVAIPTSAGAGAAANGRCLVWHPDDEVLVPLAEEGESLTVALVDPILCASLSKTQTAAMALTALSSCVDALLARELALASGTPLQNGDALLDLGRRGIGAVAEGLPVALADGKNKLARELLTIGSVCAG 768
            R  L + D        A R    +RK G    +F    A P    +  A ++AR +G  C+V +G G +IDTAK  +   +S       +           GN +     GN LPLVAIPT+AG G+      ++ +  +E     A +     +AL+D  L   + +  TAA AL A+  C++A  +R        P+ +  AL     +G+  + E  P+ L+DGKN  AR  + +G+  AG
Sbjct:   32 RHALIVTDPGIVASGFAERAAHAMRKGGTATTIFDQVAADPPYSVVRAAVQLARNVGCDCVVGLGGGSSIDTAKVVSVSINSEQSLDDMV-----------GNDRVE---GNRLPLVAIPTTAGTGSEVTFVSVLTNDANEKRAIFAPQLMP-DIALLDAELTLGMPRHVTAATALDAMVHCIEAFTSRT----RKNPISDAVAL-----KGLALLVENFPIVLSDGKNLQARNAMLLGATLAG 251          
BLAST of mRNA_Ecto-sp13_S_contig19683.6350.1 vs. uniprot
Match: A0A7C4MTS4_9BACT (Iron-containing alcohol dehydrogenase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C4MTS4_9BACT)

HSP 1 Score: 74.3 bits (181), Expect = 3.710e-11
Identity = 79/253 (31.23%), Postives = 114/253 (45.06%), Query Frame = 1
Query:   82 SAGRCLFELRKAGINCAMFTGRGAYPTADGIDEAREMARRIGATCIVSVGRGGTIDTAKAAARLHSSSGGCKQFLTSPGGVLMGEGGNSKPRTPAGNALPLVAIPTSAGAGAAANGRCLVWHPDDEVLV--PLAEEGESLTVALVDPILCASLSKTQTAAMALTALSSCVDALLARELALASGTPLQNGDALLDLGRRGIGAVAEGLPVALADGKNKLARELLTIGSVCAGQLAVATPAPPTQLVARATGSLL 834
            +A + L + + A I  A   G    PTA  +++  E+AR      +V+VG G  ID AK  A            LT   G L      +  R PA  A+P+VA+PT+AG GA A    +  H   ++ +  P+       TVALVDP L A+     TAA    AL+  ++A ++R     +  P+        L  + I  V   LP ALA   N+ AR+ L + +  AG     +    T  VA A G+LL
Sbjct:  101 TAEKALTDAKLAVIPFAAVVGE---PTAALVEQGAELARTEQLDVVVAVGGGSVIDAAKGIA-----------LLTRTTGALADYADTTPNRKPAAEAIPVVAVPTTAGTGAEATQVAVFSHQGAKISITAPVLRP----TVALVDPDLSAACDAVTTAACGADALAHAMEACMSR-----AAQPVSTA-----LAFQAIELVVSQLPAALAQPDNREARDALAVAATLAGMALNESGVTLTHSVAHALGALL 325          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19683.6350.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L9A2_9PHAE7.180e-20495.58Fe-ADH domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A836CAW8_9STRA1.080e-4841.72Iron-containing alcohol dehydrogenase-domain conta... [more]
E1JTK4_SOLFR1.510e-1630.61Iron-containing alcohol dehydrogenase n=1 Tax=Soli... [more]
UPI0009FE25733.300e-1430.07iron-containing alcohol dehydrogenase n=1 Tax=Soli... [more]
A0A7C4R5N7_9DELT1.610e-1333.33Iron-containing alcohol dehydrogenase n=1 Tax=Desu... [more]
A0A2R6GGT4_9EURY8.680e-1331.37Alcohol dehydrogenase n=3 Tax=unclassified Halobac... [more]
A0A7V2N505_9BACT2.000e-1229.24Iron-containing alcohol dehydrogenase n=1 Tax=Phyc... [more]
A0A841L4T5_9CLOT1.530e-1128.96Alcohol dehydrogenase n=1 Tax=Anaerosolibacter car... [more]
UPI0009756A412.200e-1129.10iron-containing alcohol dehydrogenase n=1 Tax=Brad... [more]
A0A7C4MTS4_9BACT3.710e-1131.23Iron-containing alcohol dehydrogenase n=1 Tax=Plan... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19683contigEcto-sp13_S_contig19683:145..2841 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score584.7
Seed ortholog evalue2.6e-164
Seed eggNOG ortholog2880.D7FKF1
Model size951
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.hydroxyacid-oxoacid transhydrogenase activity
EggNOG OGsCOG1454@1,KOG3857@2759
Ec32 ortholog descriptionAlcohol dehydrogenase, iron-type
Ec32 orthologEc-12_002290.1
Cds size951
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462994.4228709-CDS-Ecto-sp13_S_contig19683:144..2911681462994.4228709-CDS-Ecto-sp13_S_contig19683:144..291Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19683 145..291 -
1681462994.4352794-CDS-Ecto-sp13_S_contig19683:755..10611681462994.4352794-CDS-Ecto-sp13_S_contig19683:755..1061Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19683 756..1061 -
1681462994.44309-CDS-Ecto-sp13_S_contig19683:1595..18091681462994.44309-CDS-Ecto-sp13_S_contig19683:1595..1809Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19683 1596..1809 -
1681462994.4509912-CDS-Ecto-sp13_S_contig19683:2102..22721681462994.4509912-CDS-Ecto-sp13_S_contig19683:2102..2272Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19683 2103..2272 -
1681462994.4593973-CDS-Ecto-sp13_S_contig19683:2727..28411681462994.4593973-CDS-Ecto-sp13_S_contig19683:2727..2841Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19683 2728..2841 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19683.6350.1prot_Ecto-sp13_S_contig19683.6350.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19683 145..2841 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19683.6350.1

>prot_Ecto-sp13_S_contig19683.6350.1 ID=prot_Ecto-sp13_S_contig19683.6350.1|Name=mRNA_Ecto-sp13_S_contig19683.6350.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=317bp
SGQQVVAQVSRHGRTCLAIADDNTPGQSAGRCLFELRKAGINCAMFTGRG
AYPTADGIDEAREMARRIGATCIVSVGRGGTIDTAKAAARLHSSSGGCKQ
FLTSPGGVLMGEGGNSKPRTPAGNALPLVAIPTSAGAGAAANGRCLVWHP
DDEVLVPLAEEGESLTVALVDPILCASLSKTQTAAMALTALSSCVDALLA
RELALASGTPLQNGDALLDLGRRGIGAVAEGLPVALADGKNKLARELLTI
GSVCAGQLAVATPAPPTQLVARATGSLLGRHSYPSVCAMVFPHVVADMLS
QANSFSGDVEAAEAIER
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mRNA from alignment at Ecto-sp13_S_contig19683:145..2841-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19683.6350.1 ID=mRNA_Ecto-sp13_S_contig19683.6350.1|Name=mRNA_Ecto-sp13_S_contig19683.6350.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2697bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19683:145..2841- (Ectocarpus species13 EcNAP12_S_4_19m)
TCCGGTCAGCAGGTTGTTGCGCAGGTATCAAGGCACGGAAGAACGTGCCT GGCAATCGCCGATGACAACACTCCAGGGCAATCAGCCGGAAGATGCCTGT TCGAACTGCGAAAGGTGCGAAGACGGTTAGCCTACCAATAGCAGCCTTTT TTGCCTGTTCGAACTGCGAAAGGTGCGAAGACGGTTAGCCTACCAATAGC AGCCTTTTTTGTGTGTAATGATGTGTAAGGGGTAGATGAGTTTTTTCTCC ATGAGGGGTGTTGCCGAAGGGTCTGCACTCCGTCTGAACTCCCTCCGCAA AGTTCCCTGGATAAGCTACAGGACGCATTTGATTTGTTGGGTTTGAAGTT TTCGGGGCGGCGTCCATCTTTCACTTTCGCGAGGACCGATAGGGATTCAT AGTGGGGGCTGTGTCGATGGGTCTCATTACCTCCCCGACGGCTTGTGGGG CATGAACTCCGTTAGGCAAGGTTGCAAGCAGAGTTTTCTCTATGTGGCAT TCGCTTCGTTTCATACGTCTTAAGCGAAACAAGGTTTGCATTATGCTGCC TACACGTTGTCGTCCGCAGGCTGGCATCAACTGCGCGATGTTCACGGGTC GGGGCGCCTACCCTACCGCCGATGGTATAGACGAGGCACGAGAGATGGCT AGGAGGATCGGGGCGACGTGCATCGTGAGCGTTGGGCGCGGGGGGACAAT AGATACTGCCAAGGCCGCAGCAAGGCTGCACTCTAGCAGGTAGGCAGATG ATAAAATATTGCTGTTCGGAGTGATTGAACTGGGGACAGCAGCAGCTGCA GTGGACACTTAAATGTTTCGCCCTCGCCACAAAATAGGTATGATGCCTTC ACTTGCTGTTACACGCTTGGACCTGTCTTTTTTGCTCTCTCAACCCATTA TGTACTGCCACATCCCGCTCATCCACCAGCTTGTCACAACAACAACAGTA GGACGACATGACACATCCGACACATTCACCCTTCTTTTTCTCTAACTTCC GGTTTGGTCAAATCTCTTCCTTGTTCCTATAGCGGCGGGTGCAAGCAATT CTTGACGAGCCCAGGTGGCGTGCTCATGGGCGAGGGCGGTAACAGCAAGC CCCGAACACCTGCCGGAAACGCGTTGCCGCTTGTGGCGATACCGACCTCT GCTGGCGCAGGGGCCGCCGCGAACGGGCGGTGTTTGGTTTGGCACCCGGA TGACGAGGTGCTGGTGCCGCTGGCTGAGGAGGGGGAGTCCCTTACGGTGA GCCTGGGGTATAAAGTTGTGCCGACAGATCTAAGTTTGCTCTTGCGTAGG CGAACCTTGCTTTAAAACACCGCGATGTCCACCTTAATTTTGTTTTGATA CCTACCTCTTCGAACGGCAGCGTACATGACGCAGAAGTGGCTGTTTGCCT GTGCTGCGACAATCGAAATGGCCCACGGCTCAGCATACAGCACAACTGCA ACGTGCAAACGGGATGGCCCTTTCTCGCCAAAAGTGAAGCACTCCTCATT GGCCGACAACCATTGTGCTCTGTAGGCTACGCACCAAAGCGACGACGACG ACGGCACACGCATCTATACGCGCTCGCATCACCACCCCCGTTTTCCGCAT GCCACAGCGCAGCATATCATGACTGCAACGTGCAAAGGGAGTGGCCCTTT CCCGCAAATAGTAGGATACTCTTCGCTCGCCGACACCCACCATGTCCTTA AGGGTCATGCACCAAAGTGACAACGATGACAACTGCACACGCATACATAC GCGCTCGCATCACCGTCCGTACGCACCTAGGTGGCTCTGGTGGACCCTAT CCTCTGCGCCTCGCTGAGCAAGACGCAGACGGCGGCCATGGCGCTGACGG CGCTCTCCTCCTGCGTCGATGCCTTGCTAGCGCGGGAGTTGGCCCTGGCC TCCGGCACACCGCTGCAGAACGGCGACGCGCTCCTCGATCTCGGGAGGCG AGGCATCGGTGCAGTGGCGGAGGGCTTGCCGGTGGCGCTGGCGGATGGCA AGAACAAGCTGGCTAGAGAGCTGCTGACGATCGGCAGCGTGTGTGCAGGA CAGCTCGCTGTCGCCACTCCGGCCCCGCCAACTCAGGTACAGGCGCAGCT GAGACCCTCTTTAGCCGTCTGACAGTAAGAACACCCGGGGTTGAACCTGG TGTAGTGTGGCACGGCCCGCGGTGCAAACTCGCCATTGAGAAACCACGTT GGCGCGGTCGTGCGAGACGAGGAAGGGCGAGACGCGAGTTCTTAACCCCT GCAGTGCGCGATGCTATAGTGTGTGCCTGTAGACGCAGTACACTACCGCG AGTGCAAGGCACCTTGTCTGTGTTAAGACCTGCGGGTAGCTGTTTTCCTA AACGAAGAAGCAAGCATTCACGTTTGTCCTTGAAGGTCAAACAGGAGAGC TGGTTGCGAACCTGCTCCATTTCCGACTTCCCCGAAGGAGCTCAGCACGT TTGGCTGGGCAAGGAGCGTTGGTGTTCGTTGATGCGACCAAGCAACATAA AATTTTTCATCGATCGCCTCCCACGCCAACCGGCTTCCTCCGCATCTCAG CTCGTGGCTCGAGCAACGGGTTCGTTGCTGGGGAGGCATAGTTACCCTTC AGTCTGCGCGATGGTCTTTCCCCATGTTGTCGCGGACATGCTGAGTCAGG CGAACTCCTTCTCCGGAGATGTTGAAGCTGCGGAGGCCATCGAGCGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19683:145..2841-

>mRNA_Ecto-sp13_S_contig19683.6350.1 ID=mRNA_Ecto-sp13_S_contig19683.6350.1|Name=mRNA_Ecto-sp13_S_contig19683.6350.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=951bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19683:145..2841- (Ectocarpus species13 EcNAP12_S_4_19m)
TCCGGTCAGCAGGTTGTTGCGCAGGTATCAAGGCACGGAAGAACGTGCCT
GGCAATCGCCGATGACAACACTCCAGGGCAATCAGCCGGAAGATGCCTGT
TCGAACTGCGAAAGGCTGGCATCAACTGCGCGATGTTCACGGGTCGGGGC
GCCTACCCTACCGCCGATGGTATAGACGAGGCACGAGAGATGGCTAGGAG
GATCGGGGCGACGTGCATCGTGAGCGTTGGGCGCGGGGGGACAATAGATA
CTGCCAAGGCCGCAGCAAGGCTGCACTCTAGCAGCGGCGGGTGCAAGCAA
TTCTTGACGAGCCCAGGTGGCGTGCTCATGGGCGAGGGCGGTAACAGCAA
GCCCCGAACACCTGCCGGAAACGCGTTGCCGCTTGTGGCGATACCGACCT
CTGCTGGCGCAGGGGCCGCCGCGAACGGGCGGTGTTTGGTTTGGCACCCG
GATGACGAGGTGCTGGTGCCGCTGGCTGAGGAGGGGGAGTCCCTTACGGT
GGCTCTGGTGGACCCTATCCTCTGCGCCTCGCTGAGCAAGACGCAGACGG
CGGCCATGGCGCTGACGGCGCTCTCCTCCTGCGTCGATGCCTTGCTAGCG
CGGGAGTTGGCCCTGGCCTCCGGCACACCGCTGCAGAACGGCGACGCGCT
CCTCGATCTCGGGAGGCGAGGCATCGGTGCAGTGGCGGAGGGCTTGCCGG
TGGCGCTGGCGGATGGCAAGAACAAGCTGGCTAGAGAGCTGCTGACGATC
GGCAGCGTGTGTGCAGGACAGCTCGCTGTCGCCACTCCGGCCCCGCCAAC
TCAGCTCGTGGCTCGAGCAACGGGTTCGTTGCTGGGGAGGCATAGTTACC
CTTCAGTCTGCGCGATGGTCTTTCCCCATGTTGTCGCGGACATGCTGAGT
CAGGCGAACTCCTTCTCCGGAGATGTTGAAGCTGCGGAGGCCATCGAGCG
A
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