mRNA_Ecto-sp13_S_contig19680.6349.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19680.6349.1
Unique NamemRNA_Ecto-sp13_S_contig19680.6349.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19680.6349.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19680contigEcto-sp13_S_contig19680:65..2248 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size157
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size156
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462994.3798265-CDS-Ecto-sp13_S_contig19680:64..1431681462994.3798265-CDS-Ecto-sp13_S_contig19680:64..143Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19680 65..143 +
1681462994.3916998-CDS-Ecto-sp13_S_contig19680:2170..22471681462994.3916998-CDS-Ecto-sp13_S_contig19680:2170..2247Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19680 2171..2247 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19680.6349.1prot_Ecto-sp13_S_contig19680.6349.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19680 65..2247 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19680.6349.1

>prot_Ecto-sp13_S_contig19680.6349.1 ID=prot_Ecto-sp13_S_contig19680.6349.1|Name=mRNA_Ecto-sp13_S_contig19680.6349.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=52bp
CCGRWASSSFGRGSLRRHDVSAGDIGVLARPAASRSLVRREDVFRRADEE
GV
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mRNA from alignment at Ecto-sp13_S_contig19680:65..2248+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19680.6349.1 ID=mRNA_Ecto-sp13_S_contig19680.6349.1|Name=mRNA_Ecto-sp13_S_contig19680.6349.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2184bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19680:65..2248+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGCTGTGGTCGCTGGGCTAGCAGCAGCTTTGGTCGCGGGAGCTTGCGTCG
TCACGACGTCAGCGCAGGGGATATCGGCGGTAAGCAGCCCCATTTTCGCG
TGTCCACGTAATGACGGGGGTACGAGTAGCCCGGGCCGGCTTGCACCAAC
TTCAAGGAGATGTCTTCCTGTCGAACTCCTGTTGTTCAACCCGCTCTAGT
CTAGTAGGAGTGCTCTGTCGCTACCTCACCCCCTCACATACCCCTCGTCC
GCATGTGGACAAGCCGGAAGGGTTCGCGTAGATGAACAAATCCAGGGCAA
GAAGACCGACGTGTTCCCAATGTGCCCACGTCAGCAGTAGTGCCGTCGAG
AAAGTCTTCAAGACTTCTACTGGGACTGTTTGGGGCACTTCTGGATCTTA
AATAGGCAACATTCATCGACAAGGTACCAAGATCAAACAATTCGTGCGTA
TGTTTAGATCTGAGGTGTCAAAGATAGAGGAAGCGGAGGTTGTGCGGCGG
CTGGAAATACTACCCATGCCAGTCTCCACCTCCAACATGAACGAGGAACG
CGGAAACAGAGCTGTAAGTACAAAGGTGCTAGGACGACGACGGCCCAAAG
AGTAGACACAAGAGCAGGAAGTAACACTACTTGTAATGGTAAGCTGGAAG
TACTTGGGAATCACCATTTCTCCAGGAAAATTGGAAGAAAGACCGAGGAA
AAGAGGGACCCACAGAGATACGATAACTGCTGTTTTGGCTGGAGACCGAA
ACGTGCGGGGGGGAAGAATGCACAAGGGAAGAGGAAGAGAGAAAAAACGC
ACAATGAAAGCACTACAAGGAGGGTGGATGCCAGAAGGGATGAACGACTC
CAAAAAGCCCTCACCCCTATCTGCAGCAGACTCACTGGGGAAAGTAGGTA
TTAACGCGGTCGACTGTTTGGTCACTTGTAGGCCATCGGTCAAAAGCCAG
AGCAACCAATACATAGAAACCTGGTCGCCCCCCCCGGTTTGCCAGATCGG
GGTTGGGTCTTCGTCGCTTGGCAACGACGTTGTAAAACAAGTCGATCACT
TCGTGAGCTCGGCACCAGGCTACTTGTACCGCTTTTTTGTTTTCCTTTTT
TTTTTTTCGGTTACAATAGTGGAAGTCGAGTAGATCATGTTGTGCGCGGT
CGAGAATCCTCACCCCGCGCAAGGGGGATAATCGCACCACGTTTTGTTAA
ATTGGTCAAACACCCTCGAGGCGGTCACACAGTGCTTACAACTATCTCTT
GAAGTGAAAGCATCAGAAAACGAATTATGTCATACCTACGCAGCTGTCAT
CCGTGCGCAAGGAAGTAAGCACAAGATGCCGAACACCCCTCGCAGGATGC
AGCGCACCCTTCATGCGACTCGCCGAATACCTCACGGCGCTTCGCGCTTG
GCCCTCCCCTCCACTGTGGAGTATCGTTTCCGAAAGGAACAGAGCATACC
TCAGCCCGAGGGTTGAGAATCTGATGCGATACCTGGGACAGCTTGTTCTT
GTGCACGTATCGCATCGCATGTGTTTCACCACCGGTGACAGTTCAGTTGT
AGAACAACTTTCGTCGCGCGCCGGATCGACGATGCTGCATCAGTGTCTGA
TCTTTGGGGGTTGCTCCGAATGGCGCGCCTCGGAGAGCTTGTCAATCAAT
CCCTGGCGTGGTTTGTTTCTTCAACGTTGCAGGCATGTCGCCGGAGCGGT
CTACGGCATTGATGCCCCCCCACCCCCCACCCCCCGCCCCTCCCGCCCAT
CGACGTGCGAAGGCTGTGACGGGGACACAACAGACAAGTTTCGCTCCTGC
TGGCCTCTTGGGGCTGGAAAATCGTGAAGCTGTGCTCGGCAAGTCACACA
CGCTTTGCTTACCTTCGCATATTTGTAGCAGACACAATCATTTGTCGTCT
TGACGGTCGTTGATGCTGCCTGTATTGCCAAGGTATCATACCGCAATGTT
CGCAGGCATTTCTCGGCGGTACTCGACGAGGGTACCAGGTTTCTTAAGCG
GGTCCTCAGTGATCCCTCCCCCGGCACAATTAACCTTTCCCCGACTCATC
GAGCTTCTCTGCTTTCGAATCGCCATGCTTCACTCCCACGCATTCTGTTT
ATTCAGTGCTTGCGAGACCTGCGGCTTCCCGCAGTTTGGTTCGCCGGGAA
GACGTTTTCCGTAGGGCTGACGAGGAGGGCGTCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19680:65..2248+

>mRNA_Ecto-sp13_S_contig19680.6349.1 ID=mRNA_Ecto-sp13_S_contig19680.6349.1|Name=mRNA_Ecto-sp13_S_contig19680.6349.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=156bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19680:65..2248+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGCTGTGGTCGCTGGGCTAGCAGCAGCTTTGGTCGCGGGAGCTTGCGTCG
TCACGACGTCAGCGCAGGGGATATCGGCGTGCTTGCGAGACCTGCGGCTT
CCCGCAGTTTGGTTCGCCGGGAAGACGTTTTCCGTAGGGCTGACGAGGAG
GGCGTC
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