mRNA_Ecto-sp13_S_contig1967.6345.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1967.6345.1 vs. uniprot
Match: D7FZF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZF6_ECTSI) HSP 1 Score: 859 bits (2219), Expect = 4.100e-288 Identity = 769/962 (79.94%), Postives = 779/962 (80.98%), Query Frame = 1
Query: 1 SGGRQSPSRGVVSRASSPTLGVGAAVGRGGAAASSGAVEGRGGDGGGXXXXXXXXXXXXXSSESLDLLSQRSLEEELHMLLPVLLAHAPRVRMREASAALLRTRFAPSLLHVSAMNDPLSLESIVLGVCDAVTATPGITATRTSHNVSRRAEELVMRLCGLGAIASVKVRGVLVKRRSLPGVCAKVACEVLCDADSFVLAVAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGGVTVGGDRNAGLKSHWFWGHLRKSPAVTEKLLDTVLAKVEALARETVGXXXXXXXXAYGDRIAGSTAAPATTAPVGELCAALRAYCELVGLGRPAALSEHHLQAAMSAPTDALEAVLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVGADKGARHCASALRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-AGLYIALLLRGARFEAVADVVSEVLGSTPPPLTGPDGMDALDALRDAALAASESEFPRPPXXXXXXXXXXXXXXXXXXXXXASPPVSPRGGSKLASARRGSEVMPPLSLAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-GGAGWFSEAALADCVKALPPSCSVVAAVAAPGSALAPNVSEGVEGEPPAVATAAWGGAIVAAAGG-GRWRLCPVDCVEEALEQGLLVRCRVDLRDWVLSTILGTGTRTTAXXXXXXSRGSRAPGGKVDLHPSLLRVVCLYAKACVAPDLGAGDGAGKAFVMTALLPTEIAEIVQAVDWVGLTVAMPPPKDPLFPGMPAPLPHPSMTPSAGLLQPGGVVVGAPRAGGGGGLRKAGNWTGGVSSGGEVVTLSEAMPALLATCFALYHTHCISLRRSPFPAPFR 2877
SGGRQSPSRGVVSRASSP +GVGAA VE XX XXXXXXXXSSESLDLLSQRSLEEELHMLLPVLLAHAPRVRMRE+SAALLRTRFAPSLLHVSAMNDPLSLESIVLGVCDAV ATPGITATRTSH VSRRAEELVMRLCGLGAIASVKVR VL RS G NGGV G NAGL SHWFWGHLRKSPAVTE+LLDTVLAKVEALARETVGXXXXXXXX Y DR AGS+ APATT VGEL ALRAYCELVGLGRPAAL+E HLQAAMSAPTDALEAVLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AGLY ALLLRGARFEAVA VVS LGSTPPPLTGPDGMDALDALRDAALAASESEFPRPP XXXXXXXXXXX SPPVSPRGG KL +ARRGSEVMPPLSLAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GGAGWFSE ALADCVKALPPSCSV A AAPGSALAP VSEGVEGEPPAVATA GRWRLCPVDCVEEALEQGLLVRCR+DLRDWVLSTILG GT XXXXXX APGGKVDLHPSLLRVVCLYAKACV PDLGAGDGAGKAFVMTALLPTEIAEIV+AVDWVGLTVAMPPPKDPLFPGMP PLPHPSMTPSAGLLQPGGVVVGAPRA GGGG+RK GNWTGG SS GEVV +SEAMPALLATCFALYHTHCISLRRSPFPAPFR
Sbjct: 264 SGGRQSPSRGVVSRASSPAVGVGAAXXXXXXXXXXXXVEAXXXXXXXXXAVGXXXXXXXXSSESLDLLSQRSLEEELHMLLPVLLAHAPRVRMRESSAALLRTRFAPSLLHVSAMNDPLSLESIVLGVCDAVAATPGITATRTSHRVSRRAEELVMRLCGLGAIASVKVRQVL---RSGHG-----------------------------------------------------------RHHRQEDNGGVVGTGGGNAGLNSHWFWGHLRKSPAVTEQLLDTVLAKVEALARETVGXXXXXXXXXYSDRSAGSSTAPATTGTVGELSVALRAYCELVGLGRPAALTERHLQAAMSAPTDALEAVLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGLYAALLLRGARFEAVAKVVSGALGSTPPPLTGPDGMDALDALRDAALAASESEFPRPPSSPRPSNNTAXXXXXXXXXXX-SPPVSPRGGPKLTAARRGSEVMPPLSLAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAGWFSEPALADCVKALPPSCSVPVAAAAPGSALAPTVSEGVEGEPPAVATAXXXXXXXXXXXXXGRWRLCPVDCVEEALEQGLLVRCRIDLRDWVLSTILGAGTXXXXXXXXXXXXXXGAPGGKVDLHPSLLRVVCLYAKACVPPDLGAGDGAGKAFVMTALLPTEIAEIVRAVDWVGLTVAMPPPKDPLFPGMPPPLPHPSMTPSAGLLQPGGVVVGAPRAVGGGGVRKPGNWTGGGSSRGEVVIVSEAMPALLATCFALYHTHCISLRRSPFPAPFR 1162
BLAST of mRNA_Ecto-sp13_S_contig1967.6345.1 vs. uniprot
Match: A0A6H5KM27_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM27_9PHAE) HSP 1 Score: 698 bits (1802), Expect = 1.940e-236 Identity = 407/446 (91.26%), Postives = 416/446 (93.27%), Query Frame = 1
Query: 3004 MLPAVMDVCPELFCPEQRGDSCDGNDYGDAVDVTPIVEAPSGKFVSGQEITPHPLDKAFARRATGAVVAAPGGAVDVLRALLACPVPALLSTAEDVLKGVLPKVAGPDFPRRSSVASLCCDVWMRLYDAHPHGQAMETWTLNALLQTDAEAPLPRAVTYETMCREPVLVFRCRGEALSCPYLLRILLRVLRSLLLASERTIDQAVLAKNSRWEMVCASARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAWEDVEEGTATVDGRMMSLVQQAIVARCLLVVALGGTGVSGGGSAKEKREGGVVVFGDGVATQAQCRKLVCEFLQTLLSECPPLLHLLLRQTLPTEAFKLLLDGVPASRGTTRHLGDVMAQQSWEARAFGVQASALLAERFPAEEACLLCKGALHVLSSMCDSEAQAPRGTLNALAAGSAS 4341
MLPAVMDVCPELFCPEQRGDSCDGNDYGD VD T +VE PSGKF SGQEITPHPLDKAF RRATGAVVAAPGGAVDVLRALLACPVPALLSTAEDVLKGVLPK+AGPDFPRRSSVASLCCDVWMRLYDAHPHGQAMETWTLNALLQTDAEAPLPRAVTYE MCREPVLVFRCRGEALSCPYLLRILLRVLRSLLLASERTIDQAV+AKN R XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAWEDVEEGTA+VDGRMMSLVQQAIVARCLLVVALGG G+S GGSAKE+REGGVVVFGDG+AT+AQCRKLVCEFLQTL+SECPPLLHLLLRQTLPTEA KLLLDGVPASRG TRHLGDVMAQQSWEARAFGVQASALLAERFP EEACLLCKGALHVLSSMCDSEAQAPRGTLNALAAGS S
Sbjct: 1 MLPAVMDVCPELFCPEQRGDSCDGNDYGDVVDATAVVEPPSGKFASGQEITPHPLDKAFVRRATGAVVAAPGGAVDVLRALLACPVPALLSTAEDVLKGVLPKIAGPDFPRRSSVASLCCDVWMRLYDAHPHGQAMETWTLNALLQTDAEAPLPRAVTYEIMCREPVLVFRCRGEALSCPYLLRILLRVLRSLLLASERTIDQAVVAKNVR-----EKGGEGNDKAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAWEDVEEGTASVDGRMMSLVQQAIVARCLLVVALGGAGLSAGGSAKEEREGGVVVFGDGIATRAQCRKLVCEFLQTLISECPPLLHLLLRQTLPTEALKLLLDGVPASRGATRHLGDVMAQQSWEARAFGVQASALLAERFPTEEACLLCKGALHVLSSMCDSEAQAPRGTLNALAAGSVS 441
BLAST of mRNA_Ecto-sp13_S_contig1967.6345.1 vs. uniprot
Match: A0A6H5K9Q4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9Q4_9PHAE) HSP 1 Score: 679 bits (1751), Expect = 8.790e-223 Identity = 695/875 (79.43%), Postives = 706/875 (80.69%), Query Frame = 1
Query: 10 RQSPSRGVVSRASSPTLGVGAAVGRGGAAASSGAVEGRGGDGGGXXXXXXXXXXXXXSSESLDLLSQRSLEEELHMLLPVLLAHAPRVRMREASAALLRTRFAPSLLHVSAMNDPLSLESIVLGVCDAVTATPGITATRTSHNVSRRAEELVMRLCGLGAIASVKVRGVLVKRRSLPGVCAKVACEVLCDADSFVLAVAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGGVTVGGDR---------NAGLKSHWFWGHLRKSPAVTEKLLDTVLAKVEALARETVGXXXXXXXXAYGDRIAGSTAAPATTAPVGELCAALRAYCELVGLGRPAALSEHHLQAAMSAPTDALEAVLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVGADKGARHCASALRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGLYIALLLRGARFEAVADVVSEVLGSTPPPLTGPDGMDALDALRDAALAASESEFPRPPXXXXXXXXXXXXXXXXXXXXXASPPVSPRGGSKLASARRGSEVMPPLSLAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAGWFSEAALADCVKALPPSCSVVAAVAAPGSALAPNVSEGVEGEPPAVATAAWGGAIVAAAGGGRWRLCPVDCVEEALEQGLLVRCRVDLRDWVLSTILGTGTRTTAXXXXXX-----------SRGSRAPGGKVDLHPSLLRVVCLYAKACVAPDLGAGDGAGKAFVMTALLPTEIAEIVQAVDWVG 2574
RQSPSRGVVSRASSP+LGVGA+VGRGGAAA+S VEGRGGDGGG XXXXXXXX SSESLDLLSQR IVLGVCDAVT TPGITAT TSHNVSRRAEELVMRLCGLGA+ASVKVRGVLVKRRSLPGVCAKVACEVLCDAD FVLAVAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX NAGL SHWFWGHLRKSPAVTE+LLDTVLA+VEAL+RETVG A GDRIAGST APATTAPVGELCAALRAYCELVGLGRPAAL+E HLQAAMSAPTDALEA+LL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGLY ALLLRGARFEAVA+VVSEVLGST PPLTGPDGMDALDALRDAALAASESEFPRPPXXXXXXXXXXXXXXXXXXXXX SPPVSPRGG KLASARRGSE G XXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXX GAGWFSEAALADCVKALPPSCSVVAAVAAP SALAP+VSEGVEGEPPAVATAAWGGAIVAA GGGRWRLCPVDCVEEALEQGLLVRCRVDLRDWVLSTILG G XXXXXX RG APGGKVDLHPSLLRVVCLYAKACVAPDLGAGDGAGKAFVMTALLPTEIAEIVQAVDWVG
Sbjct: 39 RQSPSRGVVSRASSPSLGVGASVGRGGAAAASAVVEGRGGDGGGRAAVXXXXXXXXGSSESLDLLSQR----------------------------------------------------IVLGVCDAVTVTPGITATLTSHNVSRRAEELVMRLCGLGAMASVKVRGVLVKRRSLPGVCAKVACEVLCDADRFVLAVAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAGLNSHWFWGHLRKSPAVTEQLLDTVLARVEALSRETVGRGGGAAAAACGDRIAGSTTAPATTAPVGELCAALRAYCELVGLGRPAALTERHLQAAMSAPTDALEAMLLLPSAAPGPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGLYAALLLRGARFEAVANVVSEVLGSTTPPLTGPDGMDALDALRDAALAASESEFPRPPXXXXXXXXXXXXXXXXXXXXX-SPPVSPRGGPKLASARRGSEAPVAAGAVG-----VVPXXXXXXXXXXXXXRRRRGGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXGAGWFSEAALADCVKALPPSCSVVAAVAAPCSALAPSVSEGVEGEPPAVATAAWGGAIVAAGGGGRWRLCPVDCVEEALEQGLLVRCRVDLRDWVLSTILGAGXXXXXXXXXXXXXXXXXXXXXXGRGG-APGGKVDLHPSLLRVVCLYAKACVAPDLGAGDGAGKAFVMTALLPTEIAEIVQAVDWVG 853
BLAST of mRNA_Ecto-sp13_S_contig1967.6345.1 vs. uniprot
Match: D7FZF5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZF5_ECTSI) HSP 1 Score: 614 bits (1584), Expect = 6.700e-203 Identity = 386/481 (80.25%), Postives = 391/481 (81.29%), Query Frame = 1
Query: 2908 MIRLTAREAWAERAVGGGGC----CRDEGLASLHAFMLPAVMDVCPELFCPEQRGDSCDGNDYGDAVDVTPIVEAPSGKFVSGQEITPHPLDKAFARRATGAVVAAPGGAVDVLRALLACPVPALLSTAEDVLKGVLPKVAGPDFPRRSSVASLCCDVWMRLYDAHPHGQAMETWTLNALLQTDAEAPLPRAVTYETMCREPVLVFRCRGEALSCPYLLRILLRVLRSLLLASERTIDQAVLAKNSRWEMVCASARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAWEDVEEGTATVDGRMMSLVQQAIVARCLLVVALGGTGVSGGGSAKEKREGGVVVFGDGVATQAQCRKLVCEFLQTLLSECPPLLHLLLRQTLPTEAFKLLLDGVPASRGTTRHLGDVMAQQSWEARAFGVQASALLAERFPAEEACLLCKGALHVLSSMCDSEAQAPRGTLNALAAGSA 4338
MIRLTAREAWAERAV GG CRDEGLASLHAFMLPAVMDVCPELFCPEQRG+SCD N YGDAVD T +VEAPSG FVSGQEITPHPLDKAF RRATGAVVAAPGGAVDVLRALLACPVPALLSTAEDVLKGVLPKVAGPDFPRRSSVASLCC+VWMRLYDAHPHGQAMETWTLNALLQTDAEAPLPRAVTYETMCREPVLVFRCRGEA VLAKNSRWEMVCASARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAWEDVEEGTATVDGRMMSLVQQAIVARC EGGVVVFGDG+AT+AQ TLPTEAFKLLLDGVPASRGTTRHLGDVM QQSWEARAFGVQASALLAERFP EEACLLCKGALHVLSSMCDSEAQAPRGTLNALAAGSA
Sbjct: 1 MIRLTAREAWAERAVDGGXXXXXXCRDEGLASLHAFMLPAVMDVCPELFCPEQRGNSCDDNHYGDAVDGTAVVEAPSGSFVSGQEITPHPLDKAFVRRATGAVVAAPGGAVDVLRALLACPVPALLSTAEDVLKGVLPKVAGPDFPRRSSVASLCCNVWMRLYDAHPHGQAMETWTLNALLQTDAEAPLPRAVTYETMCREPVLVFRCRGEA----------------------------VLAKNSRWEMVCASARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAWEDVEEGTATVDGRMMSLVQQAIVARCXXXXXXXXXXXXXXXXXXXXXEGGVVVFGDGIATRAQ--------------------------TLPTEAFKLLLDGVPASRGTTRHLGDVMGQQSWEARAFGVQASALLAERFPTEEACLLCKGALHVLSSMCDSEAQAPRGTLNALAAGSA 427 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1967.6345.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1967.6345.1 >prot_Ecto-sp13_S_contig1967.6345.1 ID=prot_Ecto-sp13_S_contig1967.6345.1|Name=mRNA_Ecto-sp13_S_contig1967.6345.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=1454bp SGGRQSPSRGVVSRASSPTLGVGAAVGRGGAAASSGAVEGRGGDGGGGAAback to top mRNA from alignment at Ecto-sp13_S_contig1967:2..14942- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1967.6345.1 ID=mRNA_Ecto-sp13_S_contig1967.6345.1|Name=mRNA_Ecto-sp13_S_contig1967.6345.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=14941bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1967:2..14942- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1967:2..14942- >mRNA_Ecto-sp13_S_contig1967.6345.1 ID=mRNA_Ecto-sp13_S_contig1967.6345.1|Name=mRNA_Ecto-sp13_S_contig1967.6345.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=4362bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1967:2..14942- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |