mRNA_Ecto-sp13_S_contig19650.6338.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19650.6338.1
Unique NamemRNA_Ecto-sp13_S_contig19650.6338.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19650.6338.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19650contigEcto-sp13_S_contig19650:1016..1764 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size166
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size117
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462993.4440515-CDS-Ecto-sp13_S_contig19650:1015..11021681462993.4440515-CDS-Ecto-sp13_S_contig19650:1015..1102Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19650 1016..1102 +
1681462993.4549134-CDS-Ecto-sp13_S_contig19650:1685..17151681462993.4549134-CDS-Ecto-sp13_S_contig19650:1685..1715Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19650 1686..1715 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462993.4714215-UTR-Ecto-sp13_S_contig19650:1715..17641681462993.4714215-UTR-Ecto-sp13_S_contig19650:1715..1764Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19650 1716..1764 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19650.6338.1prot_Ecto-sp13_S_contig19650.6338.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19650 1016..1715 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19650.6338.1

>prot_Ecto-sp13_S_contig19650.6338.1 ID=prot_Ecto-sp13_S_contig19650.6338.1|Name=mRNA_Ecto-sp13_S_contig19650.6338.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=39bp
MESLCLRFKRLGNKHLLVDKGLGAATCFWEYYLRSWET*
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mRNA from alignment at Ecto-sp13_S_contig19650:1016..1764+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19650.6338.1 ID=mRNA_Ecto-sp13_S_contig19650.6338.1|Name=mRNA_Ecto-sp13_S_contig19650.6338.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=749bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19650:1016..1764+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGTCACTTTGTCTGCGCTTCAAGAGACTGGGCAATAAACATCTCCT
CGTCGACAAAGGTCTCGGTGCAGCCACCTGCTTCTGGGTACGACCTAGCA
CACGCCATACTGTGCGTCGTGCAACAACTCCCCAAGGGATGGATTTGTCA
CCACCTCCTATGTAGCCTTCAGATGTTGCGTGTCGTCCCACGGAATGCCG
GCGACCCTTGTGTTCAGTCTTTCCCTTACGTTTTGCTCCGTCGAAGCGTG
TCATGTAGGAAGTGCCGATTTCCACCACGCGCACTTTACCAACTGTACCG
ACACGTGCGTTCTTCCCTGAGCCCTCTCCGGCCTCCCGCGGACACCCGGA
ACAGGCTAGAATAGCTGGCTCTGCGTTGACCCTGGCCCTTTGCTAGTCTG
CTGGTGCCGCAGAGGAGCGACTCTAGTGCAGCATTCCCCCTTGTCTGGGA
GATGTTGGCCTCGCGCGTCCTGGGTTGAAGTGTGTAAATGACGCGATCCA
ACAACGTACCTCATGCAACCGTCTCCAGGCTCACTTGCACGCACGCGTAT
ACTACTAGGCTGGCTACGTATGGGTGTCAGTTCTCGATGGCAGAGAGAGC
TGTCGATGCGGATTGTTTCAAAGCACGCCAACCACTTCTCCTGCTGACCA
CCAGAACGCTGCTTGTGCAGGAGTACTACCTACGGAGCTGGGAAACTTGA
GTAGTCTAAGGACATTTGAGTTTGGAAATAACCCACCCAAATCCATTTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19650:1016..1764+

>mRNA_Ecto-sp13_S_contig19650.6338.1 ID=mRNA_Ecto-sp13_S_contig19650.6338.1|Name=mRNA_Ecto-sp13_S_contig19650.6338.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=117bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19650:1016..1764+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGTCACTTTGTCTGCGCTTCAAGAGACTGGGCAATAAACATCTCCT
CGTCGACAAAGGTCTCGGTGCAGCCACCTGCTTCTGGGAGTACTACCTAC
GGAGCTGGGAAACTTGA
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