mRNA_Ecto-sp13_S_contig1965.6337.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1965.6337.1 vs. uniprot
Match: D7FIH9_ECTSI (Sof1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIH9_ECTSI) HSP 1 Score: 294 bits (752), Expect = 1.920e-96 Identity = 145/147 (98.64%), Postives = 147/147 (100.00%), Query Frame = 1
Query: 7 KVVLQMRSNAVAWNPQEPMNFVCANEDTNLYTFDLRNLNQALMIHKDHVSAVMDVSFSPTGQEFASGSYDRTVRVFPHRAGRSREVYHTKRMQRVFCVNFSADARFVVTGSDDTNLRIWKANASEKLGKVVPREARKQEYRNSLKKR 447
KVVLQMRSNAVAWNPQEPMNFVCANEDTNLYTFDLRNLNQALMIHKDHVSAVMDVSFSPTGQEFASGSYDRTVRVFPHRAGRSREVYHTKRMQRVFCVNFSADARFV+TGSDDTNLRIWKANASEKLGKVVPREARKQEYR+SLKKR
Sbjct: 236 KVVLQMRSNAVAWNPQEPMNFVCANEDTNLYTFDLRNLNQALMIHKDHVSAVMDVSFSPTGQEFASGSYDRTVRVFPHRAGRSREVYHTKRMQRVFCVNFSADARFVMTGSDDTNLRIWKANASEKLGKVVPREARKQEYRDSLKKR 382
BLAST of mRNA_Ecto-sp13_S_contig1965.6337.1 vs. uniprot
Match: W1P0N3_AMBTC (DDB1- and CUL4-associated factor 13 n=3 Tax=Magnoliopsida TaxID=3398 RepID=W1P0N3_AMBTC) HSP 1 Score: 219 bits (559), Expect = 2.440e-67 Identity = 97/147 (65.99%), Postives = 127/147 (86.39%), Query Frame = 1
Query: 7 KVVLQMRSNAVAWNPQEPMNFVCANEDTNLYTFDLRNLNQALMIHKDHVSAVMDVSFSPTGQEFASGSYDRTVRVFPHRAGRSREVYHTKRMQRVFCVNFSADARFVVTGSDDTNLRIWKANASEKLGKVVPREARKQEYRNSLKKR 447
K+V+Q R+NA+AWNP+EPMNF ANED N Y++D+RN+ QA +H+DHVSAVMD+ +SPTG+EF +GSYDRTVR+F + AG SRE+YHTKRMQRVFCV FS DA +V++GSDDTNLR+WKA ASE+LG ++PRE +KQEY +++K+R
Sbjct: 241 KIVMQTRTNAIAWNPREPMNFSLANEDCNCYSYDMRNMEQAKCVHRDHVSAVMDIDYSPTGREFVTGSYDRTVRIFQYNAGHSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLLPRERKKQEYLDAVKER 387
BLAST of mRNA_Ecto-sp13_S_contig1965.6337.1 vs. uniprot
Match: A0A7N0TIW4_KALFE (Sof1 domain-containing protein n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0TIW4_KALFE) HSP 1 Score: 216 bits (549), Expect = 7.650e-66 Identity = 95/147 (64.63%), Postives = 122/147 (82.99%), Query Frame = 1
Query: 7 KVVLQMRSNAVAWNPQEPMNFVCANEDTNLYTFDLRNLNQALMIHKDHVSAVMDVSFSPTGQEFASGSYDRTVRVFPHRAGRSREVYHTKRMQRVFCVNFSADARFVVTGSDDTNLRIWKANASEKLGKVVPREARKQEYRNSLKKR 447
K+++Q R+NA+AWNP EPMNF ANED N Y++D R L++A +HKDHVSAVMD+ FSPTG+EFA+GSYDRTVR+FP+ G SREVYH KRMQRVFCV FS D ++++GSDDTNLR+WKA ASE+LG ++PRE +K +Y ++KKR
Sbjct: 241 KIIMQTRTNAIAWNPMEPMNFTAANEDCNCYSYDARKLDEAKCVHKDHVSAVMDIDFSPTGREFATGSYDRTVRIFPYNGGHSREVYHGKRMQRVFCVKFSCDGSYIISGSDDTNLRLWKAKASEQLGVLLPREKKKHDYLEAVKKR 387
BLAST of mRNA_Ecto-sp13_S_contig1965.6337.1 vs. uniprot
Match: UPI000C1D637B (DDB1- and CUL4-associated factor 13 n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D637B) HSP 1 Score: 213 bits (542), Expect = 1.900e-65 Identity = 94/147 (63.95%), Postives = 121/147 (82.31%), Query Frame = 1
Query: 7 KVVLQMRSNAVAWNPQEPMNFVCANEDTNLYTFDLRNLNQALMIHKDHVSAVMDVSFSPTGQEFASGSYDRTVRVFPHRAGRSREVYHTKRMQRVFCVNFSADARFVVTGSDDTNLRIWKANASEKLGKVVPREARKQEYRNSLKKR 447
K++++ ++N++AWNP EPMNF ANED N Y++D R LN+A +HKDHVSAVMD+ +SPTG+EF SGSYDRTVR+F + G SREVYHTKRMQRVFCV FS DA +V++GSDDTNLR+WKA ASE+LG ++PRE +K EY ++K R
Sbjct: 182 KIIMRTKTNSIAWNPMEPMNFTAANEDCNCYSYDARKLNEARCVHKDHVSAVMDIDYSPTGREFVSGSYDRTVRIFQYNGGHSREVYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLLPRERKKHEYLEAVKNR 328
BLAST of mRNA_Ecto-sp13_S_contig1965.6337.1 vs. uniprot
Match: A0A2N9GVH8_FAGSY (DDB1- and CUL4-associated factor 13 n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GVH8_FAGSY) HSP 1 Score: 213 bits (543), Expect = 3.590e-65 Identity = 94/145 (64.83%), Postives = 120/145 (82.76%), Query Frame = 1
Query: 13 VLQMRSNAVAWNPQEPMNFVCANEDTNLYTFDLRNLNQALMIHKDHVSAVMDVSFSPTGQEFASGSYDRTVRVFPHRAGRSREVYHTKRMQRVFCVNFSADARFVVTGSDDTNLRIWKANASEKLGKVVPREARKQEYRNSLKKR 447
+L+ R+N++AWNP EPMNF ANED N Y++D LN+A M+HKDHVSAVMD+ +SPTG+EF +GSYDRTVR+FP+ G SRE+YHTKRMQRVFCV FS DA +V++GSDDTNLR+WKA ASE+LG ++PRE + EY ++LK R
Sbjct: 224 LLKTRTNSIAWNPMEPMNFTAANEDCNCYSYDFTKLNEARMVHKDHVSAVMDIDYSPTGREFVTGSYDRTVRIFPYNGGHSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLLPREKKSHEYNDALKSR 368
BLAST of mRNA_Ecto-sp13_S_contig1965.6337.1 vs. uniprot
Match: A0A6P8CJY2_PUNGR (DDB1- and CUL4-associated factor 13 n=4 Tax=cellular organisms TaxID=131567 RepID=A0A6P8CJY2_PUNGR) HSP 1 Score: 214 bits (544), Expect = 4.390e-65 Identity = 94/149 (63.09%), Postives = 122/149 (81.88%), Query Frame = 1
Query: 1 VWKVVLQMRSNAVAWNPQEPMNFVCANEDTNLYTFDLRNLNQALMIHKDHVSAVMDVSFSPTGQEFASGSYDRTVRVFPHRAGRSREVYHTKRMQRVFCVNFSADARFVVTGSDDTNLRIWKANASEKLGKVVPREARKQEYRNSLKKR 447
V KV++ R+NA+AWNP EPMNF ANED N Y++D R L+++ +H+DHVSAV+D+ +SPTG+EF +GSYDRTVR+FP+ G SRE+YHTKRMQRVFCV FS DA ++++GSDDTNLR+WKA ASE+LG V+PRE RK EY ++K R
Sbjct: 240 VRKVIMMTRTNAIAWNPMEPMNFTAANEDCNCYSYDARKLDESKNVHQDHVSAVLDIDYSPTGREFVTGSYDRTVRIFPYNGGHSREIYHTKRMQRVFCVKFSCDASYIISGSDDTNLRLWKAKASEQLGVVLPREKRKHEYHEAVKNR 388
BLAST of mRNA_Ecto-sp13_S_contig1965.6337.1 vs. uniprot
Match: A0A4Y7JCS6_PAPSO (Sof1 domain-containing protein n=2 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7JCS6_PAPSO) HSP 1 Score: 206 bits (524), Expect = 4.480e-65 Identity = 90/142 (63.38%), Postives = 116/142 (81.69%), Query Frame = 1
Query: 16 LQMRSNAVAWNPQEPMNFVCANEDTNLYTFDLRNLNQALMIHKDHVSAVMDVSFSPTGQEFASGSYDRTVRVFPHRAGRSREVYHTKRMQRVFCVNFSADARFVVTGSDDTNLRIWKANASEKLGKVVPREARKQEYRNSLK 441
++ ++NA+ WNP EPMNF ANED N Y++D R L ++ +HK HVSAVMD+ +SPTG+EF +GSYDRT+R+FP+ G SRE+YHTKRMQRVFCV F+ DA +VV+GSDDTNLR+WKANASE+LG +VPRE +K EY +LK
Sbjct: 1 MKTKTNALCWNPMEPMNFTAANEDCNSYSYDARKLKESKNVHKGHVSAVMDIDYSPTGREFVTGSYDRTIRIFPYNGGHSREIYHTKRMQRVFCVKFTCDATYVVSGSDDTNLRLWKANASEQLGVIVPRERKKHEYNEALK 142
BLAST of mRNA_Ecto-sp13_S_contig1965.6337.1 vs. uniprot
Match: A0A059A0D2_EUCGR (DDB1- and CUL4-associated factor 13 n=3 Tax=Myrtoideae TaxID=1699513 RepID=A0A059A0D2_EUCGR) HSP 1 Score: 213 bits (542), Expect = 8.520e-65 Identity = 95/147 (64.63%), Postives = 120/147 (81.63%), Query Frame = 1
Query: 7 KVVLQMRSNAVAWNPQEPMNFVCANEDTNLYTFDLRNLNQALMIHKDHVSAVMDVSFSPTGQEFASGSYDRTVRVFPHRAGRSREVYHTKRMQRVFCVNFSADARFVVTGSDDTNLRIWKANASEKLGKVVPREARKQEYRNSLKKR 447
KV+++ ++NA++WNP EPMNF ANED N Y++D R L +A +HKDHVSAVMD+ +SPTG+EF +GSYDRTVR+F + G SREVYHTKRMQRVFCV FS DA +V++GSDDTNLR+WKA ASE+LG V+PRE RK EY ++K R
Sbjct: 241 KVIMRTKTNAISWNPMEPMNFTAANEDCNCYSYDARKLEEAKCVHKDHVSAVMDIDYSPTGREFVTGSYDRTVRIFQYNGGHSREVYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVVLPRERRKHEYHEAVKSR 387
BLAST of mRNA_Ecto-sp13_S_contig1965.6337.1 vs. uniprot
Match: B9RVU4_RICCO (DDB1- and CUL4-associated factor 13 n=2 Tax=Ricinus communis TaxID=3988 RepID=B9RVU4_RICCO) HSP 1 Score: 213 bits (542), Expect = 8.520e-65 Identity = 92/147 (62.59%), Postives = 121/147 (82.31%), Query Frame = 1
Query: 7 KVVLQMRSNAVAWNPQEPMNFVCANEDTNLYTFDLRNLNQALMIHKDHVSAVMDVSFSPTGQEFASGSYDRTVRVFPHRAGRSREVYHTKRMQRVFCVNFSADARFVVTGSDDTNLRIWKANASEKLGKVVPREARKQEYRNSLKKR 447
K++++ R+N++AWNP EPMNF ANED N Y+FD R L++A +HKDHVSAVMD+ FSPTG+EF +GSYDRTVR+FP+ G SRE+YHTKRMQRVFCV FS D ++++GSDDTNLR+WKA ASE+LG ++PRE ++ EY ++K R
Sbjct: 241 KLIMRTRTNSIAWNPMEPMNFTAANEDCNCYSFDARKLDEAKCVHKDHVSAVMDIDFSPTGREFVTGSYDRTVRIFPYNGGHSREIYHTKRMQRVFCVKFSCDGSYIISGSDDTNLRLWKAKASEQLGVLLPRERKRHEYNEAVKNR 387
BLAST of mRNA_Ecto-sp13_S_contig1965.6337.1 vs. uniprot
Match: A0A0D6R4A4_ARACU (DDB1- and CUL4-associated factor 13 n=1 Tax=Araucaria cunninghamii TaxID=56994 RepID=A0A0D6R4A4_ARACU) HSP 1 Score: 213 bits (541), Expect = 1.200e-64 Identity = 92/147 (62.59%), Postives = 124/147 (84.35%), Query Frame = 1
Query: 7 KVVLQMRSNAVAWNPQEPMNFVCANEDTNLYTFDLRNLNQALMIHKDHVSAVMDVSFSPTGQEFASGSYDRTVRVFPHRAGRSREVYHTKRMQRVFCVNFSADARFVVTGSDDTNLRIWKANASEKLGKVVPREARKQEYRNSLKKR 447
K+++Q R+NA+AWNP+EPMNF ANED N Y++D+R +N + +H+DH+S+VMD+ +SP+G+EF +GSYDRTVR+FP+ AG SRE+YHTKRMQRVFCV F+ DA +V++GSDDTNLR+WKA ASE+LG ++PRE RK EY S K+R
Sbjct: 241 KLIMQTRNNAIAWNPREPMNFTAANEDCNCYSYDMRRMNISTCVHQDHISSVMDIDYSPSGREFVTGSYDRTVRIFPYNAGHSREIYHTKRMQRVFCVKFTCDATYVLSGSDDTNLRLWKAKASEQLGLLLPRERRKHEYLESAKER 387 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1965.6337.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1965.6337.1 >prot_Ecto-sp13_S_contig1965.6337.1 ID=prot_Ecto-sp13_S_contig1965.6337.1|Name=mRNA_Ecto-sp13_S_contig1965.6337.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=143bp MRSNAVAWNPQEPMNFVCANEDTNLYTFDLRNLNQALMIHKDHVSAVMDVback to top mRNA from alignment at Ecto-sp13_S_contig1965:13202..14723- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1965.6337.1 ID=mRNA_Ecto-sp13_S_contig1965.6337.1|Name=mRNA_Ecto-sp13_S_contig1965.6337.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1522bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1965:13202..14723- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1965:13202..14723- >mRNA_Ecto-sp13_S_contig1965.6337.1 ID=mRNA_Ecto-sp13_S_contig1965.6337.1|Name=mRNA_Ecto-sp13_S_contig1965.6337.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=429bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1965:13202..14723- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |