|
|
Homology
BLAST of mRNA_Ecto-sp13_S_contig1965.6336.1 vs. uniprot
Match: D7FII0_ECTSI (Ankyrin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FII0_ECTSI) HSP 1 Score: 519 bits (1337), Expect = 2.390e-172 Identity = 374/513 (72.90%), Postives = 385/513 (75.05%), Query Frame = 2
Query: 332 MVPPRNKQRSTTTGFDGCSRRSSCERSSTSTCGVGDVILEFCTPGARSPIHFVDATTAAAAASCRGRPCGGNTTCNTYGSSRDVRPPTLLRQQSAPASSTARPSTNASVYTGKHHRRTSTTPLDGARLTLLGVSKALNTPVLDNWEVARALLESNTDLRTRNGRGMTPLHLACSTGEVDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTALRALLDAGEALDSPSTPAXXXXXXXXXXXXXXXXXXXXXRRGADPSRKNKRGATPLDMVGTLVIPVSARPSPATQGGPETMSGKAKLAREAFEKNLAEGKRVRLALASAQRWQRKRGMVLVCETLRKRANAVLAPADGASDGGAVAGSERLDRDNDDSKRRCRRSLAGEPVATAVPVQGWLVAQLCVHADPELMKGVIEFL 1870
MVPPRNKQ+STT GFDG S+RSSCERSSTSTCGVGDVILEFCTPGARSPI FVDATTAAAA SCRGRPCGGNTTC +GSSRDVRPP LLRQQSAPASSTARPS ASVYTGKHHRRTST PLDGARLTLLGVSKALNTPV DNWEVARALLESNTDLRTRN RGMTPLHLACSTGEVDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LTALRALLDAGEA+DSPSTPAXXXXXXXXXXXXXXXXXX RGADPSR+NKRGATPLDM GGPETMSGKAKLAREAFEK LAEG+RVRLAL SAQRWQRKRGMVLVCETLRKRANAVLA ADGASDGGA+AG ERL+RD+ D+KRR RRSLAG VA+AVP QGWLVAQLCVHADP LMKGVIEFL
Sbjct: 1 MVPPRNKQQSTTIGFDGFSQRSSCERSSTSTCGVGDVILEFCTPGARSPIDFVDATTAAAA-SCRGRPCGGNTTCYAHGSSRDVRPPVLLRQQSAPASSTARPSAEASVYTGKHHRRTSTPPLDGARLTLLGVSKALNTPVQDNWEVARALLESNTDLRTRNDRGMTPLHLACSTGEVDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKASDLGTTALHNAGFTPLHVAARCGR----------------------------------------------------------LTALRALLDAGEAVDSPSTPAXXXXXXXXXXXXXXXXXXELLLRGADPSRRNKRGATPLDM-----------------GGPETMSGKAKLAREAFEKKLAEGERVRLALTSAQRWQRKRGMVLVCETLRKRANAVLALADGASDGGALAGRERLERDHGDTKRRFRRSLAGGSVASAVPSQGWLVAQLCVHADPALMKGVIEFL 437
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Stop | 1 |
| Start | 1 |
| Seed ortholog score | 525.8 |
| Seed ortholog evalue | 2.3e-146 |
| Seed eggNOG ortholog | 2880.D7FII0 |
| Model size | 3028 |
| KEGG ko | ko:K15503 |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| EggNOG free text desc. | response to abiotic stimulus |
| EggNOG OGs | COG0666@1,KOG4177@2759 |
| Ec32 ortholog description | Ankyrin repeat-containing domain |
| Ec32 ortholog | Ec-28_000350.1 |
| Cds size | 1542 |
| COG Functional cat. | G |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko01009,ko03400 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681462993.2826347-UTR-Ecto-sp13_S_contig1965:6305..6627 | 1681462993.2826347-UTR-Ecto-sp13_S_contig1965:6305..6627 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig1965 6306..6627 + |
| 1681462993.2974815-UTR-Ecto-sp13_S_contig1965:7546..7555 | 1681462993.2974815-UTR-Ecto-sp13_S_contig1965:7546..7555 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig1965 7547..7555 + |
| 1681462993.3539438-UTR-Ecto-sp13_S_contig1965:10163..11318 | 1681462993.3539438-UTR-Ecto-sp13_S_contig1965:10163..11318 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig1965 10164..11318 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681462993.3096912-CDS-Ecto-sp13_S_contig1965:7555..8086 | 1681462993.3096912-CDS-Ecto-sp13_S_contig1965:7555..8086 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1965 7556..8086 + |
| 1681462993.322672-CDS-Ecto-sp13_S_contig1965:8465..8648 | 1681462993.322672-CDS-Ecto-sp13_S_contig1965:8465..8648 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1965 8466..8648 + |
| 1681462993.3335805-CDS-Ecto-sp13_S_contig1965:9010..9184 | 1681462993.3335805-CDS-Ecto-sp13_S_contig1965:9010..9184 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1965 9011..9184 + |
| 1681462993.345163-CDS-Ecto-sp13_S_contig1965:9509..10163 | 1681462993.345163-CDS-Ecto-sp13_S_contig1965:9509..10163 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1965 9510..10163 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1965.6336.1 >prot_Ecto-sp13_S_contig1965.6336.1 ID=prot_Ecto-sp13_S_contig1965.6336.1|Name=mRNA_Ecto-sp13_S_contig1965.6336.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=514bp
MVPPRNKQRSTTTGFDGCSRRSSCERSSTSTCGVGDVILEFCTPGARSPI HFVDATTAAAAASCRGRPCGGNTTCNTYGSSRDVRPPTLLRQQSAPASST ARPSTNASVYTGKHHRRTSTTPLDGARLTLLGVSKALNTPVLDNWEVARA LLESNTDLRTRNGRGMTPLHLACSTGEVDAAKVLLLAGADSHARDHRSRC PLHMAALSGKSELVSSLLTCGADPNKASDLGTTALHNAALLGRVEASRAL LVAGADPNAIDHNSFSPLYLASQNGHTQLVLDLLAAGADTSVKTIRGFTP LHVAARCGRLTALRALLDAGEALDSPSTPAGTTPLHLAAGFSRLSCVKEL LRRGADPSRKNKRGATPLDMVGTLVIPVSARPSPATQGGPETMSGKAKLA REAFEKNLAEGKRVRLALASAQRWQRKRGMVLVCETLRKRANAVLAPADG ASDGGAVAGSERLDRDNDDSKRRCRRSLAGEPVATAVPVQGWLVAQLCVH ADPELMKGVIEFL* back to topmRNA from alignment at Ecto-sp13_S_contig1965:6306..11318+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig1965.6336.1 ID=mRNA_Ecto-sp13_S_contig1965.6336.1|Name=mRNA_Ecto-sp13_S_contig1965.6336.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5013bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1965:6306..11318+ (Ectocarpus species13 EcNAP12_S_4_19m) CAAATACTTTGTACCAGAAAAGCTGGATTCCAACGAAGCAGGCGTCTCCT
CCGCCAAACCGAGCTACTCATCATTTTCGGCTTTGCAAGGGCACTGACTC
CGAACCCTCCTTCTCCAACACTCTACCACTCTCGTCTCTACCCAACGGCC
AAACCGAGCACGGATTGGCAACGACTCTCGCAGCCCCTACTGCTGTTGCA
CACGCTTCGTTAGGCTCTCTCCCCTACAACGGGTCTGCTCGGTACTTTCG
TGTTACACTGGAGCCAGCAGAGAACGCAATCGGCAGCGTTGTTTTGAGGG
AGACGCTGAACAGCACTTCAAGGTGAGCAAGGGGATTGTGCTGCCTGCTC
AGATAAAGAGGAATTCCTGTACCACAGCAGCACACTCTGGTTCGAGTGAG
GCTCTCTCTCTCTCTCTCTCTCTCTCCTGTAGCAGACATCGATCGGTCGC
CCCGCCGACCGTCGACACTTTTCTTCCGTTCAAGAGGTTCGGTCGGCCTT
TCGTCCTTCGATGAGGTCGCGCCGTACTTTCGTACTCCTCTACCTCGTAG
AAGCTGTGCCTCGTGCGGTTTCTTCGTCTCCCTTTGTCGTCCGTTCTCTC
TGCAAGGAACCGTTTGCTGGATGACCTCAACTATTGCTTCTGCTGAGTCC
GCAAAAGGAGGTCAAACCTTGGATCAGAGGATTCGGGCTTGTCTGTCTGT
TGCATCTCAGCCTTGCTCAGCTGTCAAAACTCCCTCGTGAATTGACCACA
TCGTACACGCAAACACCCACCTTCATCCAACTCACACAATCGTTGAGAGC
GGAGGTTGCTCAGTGCAAAGGTTCCCAGTATCTATATAAGCATCGCTGTT
ATGGCGCACGGGCCGCGGCCACTGACACTATTTACTGCACAAACATGTTG
TCACAGAGGACGACTTGATTTGATGTCACGTATAGCATGCACGTGTACAT
ACACCCGCATTTCCAACCTGTCTGTACTGGCGTGGATTTTGTGGCATGCA
AAAAGGGTCAGGGACAGCACAGCAAGCCGTGGCCCTTTACCGTCCACAGC
AGCTTCGAATCTTCTAGGCACACGTACAAGTAGCTGCTACACGGTTGATG
CGCAGGGCCGATAAGATTCATCGACACCCAAGAAGCAATTTCTCATGCCA
ATCCCGCGCGGGTCTGGACTGAGTCGTTGCTCTCTTCCTGCCTCGTCCGC
GTTCCGTTTTCACTGCATTCGACATCCTCTTGAATACGCAGCACACAAGC
ATGGTGCCACCCAGGAACAAGCAGCGGAGCACCACCACCGGCTTCGACGG
GTGTTCCCGGCGGTCCTCTTGCGAGAGGTCGTCGACGTCAACATGCGGAG
TTGGCGACGTGATTCTAGAGTTTTGCACTCCCGGTGCACGATCCCCGATA
CACTTCGTCGACGCAACAACGGCGGCGGCGGCGGCATCCTGCCGCGGGAG
GCCTTGCGGGGGAAACACCACCTGCAATACATACGGCAGTAGCAGAGATG
TGCGGCCACCGACCTTGTTGCGACAGCAGTCGGCGCCGGCATCGTCGACG
GCACGACCATCAACCAACGCCAGCGTCTACACGGGCAAGCACCACCGCAG
AACGTCGACGACGCCGCTGGACGGCGCGCGTCTGACGCTGCTGGGCGTGT
CCAAGGCGCTCAACACTCCCGTATTGGACAACTGGGAGGTGGCCCGGGCG
TTGCTGGAGTCCAACACCGACCTCCGGACAAGAAACGGCCGCGGGATGAC
TCCTCTGCACTTGGCATGTTCAACTGGAGAGGTGCGTATATTCTTGGCAG
CGTTGTATCTCTGTGAGTAAATTCTTGACACCGTTGATCGACTTTCATTT
CAAGACTCTTGATTGACTTCAGTAAGATTCCTGCTGTCCACTGGCAAGGA
CAAAATGGTGTTGGGGATTCCACGTGGGTGTGCTCTGGATGGTTGTAGGA
GTAGGTGGCGCTCAGCGTGCTTTTTCGTAACGCCGCCGTGCTCGGGCAAC
GCATCCGTCAACATGACATGTCGGACAAATAAATACCCAAACGCATTCAT
GTCTCTCCGTGTGGCATTTGTTGCTGAAGACAAGCAGTCTGTTGAAGTGA
TCTAACGCACAAGCATATCCACGGGATTGTCACTGCTGTTGGGTGTTGCA
ATCGTCTCAGGTGGACGCGGCGAAGGTGCTGCTTCTCGCCGGCGCGGACT
CCCACGCGAGAGACCACAGGTCCCGGTGCCCGCTGCACATGGCGGCCTTG
TCTGGAAAGTCGGAGCTGGTGTCCTCCCTGCTCACGTGCGGTGCGGACCC
CAACAAGGCGTCCGACCTCGGCACGACGGCACTCCACAACGCGGTAAGAT
TCGGAGCGAGCGGTTGTATTGGCCGGCCGTGGGGCCACCACAACAACGCC
ATCACGCGACTAGCAATAGGATTAAAGGCATGCCTGCACGTGTTTGCCCC
CCCCCCCGCCCCAATGTCCCGGATAATGCTCTTCGGCAATCACCCCGTTT
ATCCGACAGGTTTGTCTTCGAAGTCCAGCTCATACATGCCCGAACAGGGA
GCAAACAAGGTAGAACCATTCGTAACCGCACAACGTACGACCACCGATGC
GCGGGATCAAGCACTTGGTGGAGCATGGGAGTTTTGGTTTGCGCTTTTCG
TCTTTGACGCTCCTTCCCCCCCTCTTCCCCCCGCATTCCATCGATTTTTC
TGCAGGCGTTGCTGGGACGGGTGGAAGCGTCTCGGGCGCTGCTGGTGGCG
GGTGCGGACCCGAATGCGATCGACCACAACTCTTTCTCTCCGCTCTACCT
GGCGTCGCAGAACGGACACACACAGCTGGTGCTCGACCTGCTCGCCGCCG
GCGCAGACACGAGTGTCAAGACCATCAGGGTGAGACATAGAACCACGATA
ACGATCAGAAGGGAAAGGGATTGGGTGCATGGAGTGGCTGGTTGCAGTGG
AAACATGCGCGGGGTTTCTTGTTGAAGAACGTGGTTGGGGGTATGCAGAT
CGACGATGTTCACACTAGCTTGGTGCTTTCGGAGCCACCAGGGGATGCAT
CTCTTTGTTTGGAGATGTTGGTGTTTTGTGGTACGTGAAGCACACACGCC
CCATGGACGTGTTCAGGAAAATAACTTCCCTTGCACCTGACCTCACGAGA
TTAATGTCACCCCCCCCCTACGCTGTGTTTTTTTCGCCTCTACTACTGTT
GCAGGGCTTCACTCCCTTGCACGTGGCGGCAAGGTGCGGGCGCTTGACTG
CCCTGAGGGCCCTCCTGGACGCCGGCGAGGCGTTGGACTCCCCGTCCACC
CCCGCGGGCACCACCCCCCTCCACCTCGCGGCCGGGTTCTCGCGGCTGAG
CTGCGTGAAGGAGCTGCTCCGGCGCGGCGCCGACCCTTCGAGGAAGAACA
AGCGCGGTGCCACGCCGCTGGACATGGTGGGCACCCTCGTCATTCCAGTC
AGCGCTCGCCCCTCCCCCGCCACCCAGGGCGGGCCCGAGACGATGAGCGG
CAAGGCCAAGCTCGCCCGGGAGGCGTTCGAGAAGAACTTGGCGGAAGGGA
AGCGGGTGAGGCTCGCCCTGGCGAGCGCGCAGAGGTGGCAGAGGAAACGG
GGCATGGTGCTGGTGTGCGAGACTCTCCGCAAGAGGGCCAACGCTGTCCT
CGCGCCTGCTGATGGCGCATCCGACGGGGGTGCGGTGGCAGGGAGTGAGC
GGCTCGACCGCGACAATGACGACAGCAAGCGCCGCTGCAGGCGTTCCCTA
GCTGGCGAGCCGGTCGCAACGGCCGTCCCTGTCCAGGGTTGGCTGGTCGC
GCAGCTCTGCGTGCATGCCGACCCCGAGTTGATGAAGGGCGTCATTGAGT
TTTTGTAAGGCCGCGCGTGCCGCGCAGGGGACAGCAGCAGTCGTTTCACA
GGATTCGTAACAGGCCCGCAGGACCCTAGTAGATCATCGGTGATAAATGG
TGGTGAAGCTGTCTCGGGACGCGAATTTTCTGTGGATAGATAGTTTGTCC
CACTTCATAGTTTCTTTTAATGTTTGTTCGGCTCCAAAGAGCCAAAAGGT
TGTGTTCGCAGTTTCACACCCTGCCTGTCGTACTAGTACTGCTGTTGGGC
CGTAGACTTTCCCTCTCCGGCCCCTCCTTGATTGAGACAATTCAAGCGAA
GGTACATTAGTTATGCTCTTTTCTCGTATTTTTTAACTACTATTCGTCCG
AAGTGATCATCCGAATGAGGGGATGCCATGTACCATATGTTACTCTTTGG
CAGGGAGGAGGTTTTGAGTCGTTGTGGCTTCCGTCTTCCCGAGGGTGTGT
CGTCATTCCAGTTTCCTGAAGGAGGCTGTTCGCGGGGACACTAGGAACTC
GTACCTAAAGCGCTTGAGACTCCAGAAGCTCAGCAAGAGGAGCAGCAAGT
GTTGTAGGACGGTGGTTGAGCCCCGTAGCCTCCGACGGGGTGCACGCTGC
TAGTCGACAGTCGCGGAGGGGGCACTGAACGCTGTAACGCGTTCCTTAGT
CAGCCCTCACTCTTACTCTCAAAACCAAGTGGTGTGTCGTGTCAGGCTCT
GCTTTTGATCTGGTGTTTTGTTTGCCGATATTGCAAGCCTTTGAAGTGGT
CATGTAGTCTTGTCAATTTACTTTAGAGCGGTGTGTTGTATGTCTGCCTG
TCGTGCATGTCGGTCCGGTGGATGGACACGGCGCACTAGGTAAATATACC
AGGTTGCTGGATGTACACGGTAGTCACATCATTGAAAAAATATAGGTTCG
AGTTGAGAAAGAGGTCGGCCGCGCAGGTTGACCCGTGTACAAAGGCAATG
CTAAAGGCTTACCATCAAAGACGCTAAATTCTCGAGTTAGTACTTGGGAC
TTCGCGTAAATAGTACTGATGTTGAACGAACGGAGCTGGAAGTGGCCTAC
TTTTTCACGTGTGGTCAAATGGTCATGGGTGGCTGGTGGGTTTAGCAAAC
TAGAGGTTTCGCTGGAGGATCATGAAAAGACCATAATACAATTGCGTTGC
AAGAGCGCAACAC back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig1965:6306..11318+ >mRNA_Ecto-sp13_S_contig1965.6336.1 ID=mRNA_Ecto-sp13_S_contig1965.6336.1|Name=mRNA_Ecto-sp13_S_contig1965.6336.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1542bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1965:6306..11318+ (Ectocarpus species13 EcNAP12_S_4_19m) ATGGTGCCACCCAGGAACAAGCAGCGGAGCACCACCACCGGCTTCGACGG GTGTTCCCGGCGGTCCTCTTGCGAGAGGTCGTCGACGTCAACATGCGGAG TTGGCGACGTGATTCTAGAGTTTTGCACTCCCGGTGCACGATCCCCGATA CACTTCGTCGACGCAACAACGGCGGCGGCGGCGGCATCCTGCCGCGGGAG GCCTTGCGGGGGAAACACCACCTGCAATACATACGGCAGTAGCAGAGATG TGCGGCCACCGACCTTGTTGCGACAGCAGTCGGCGCCGGCATCGTCGACG GCACGACCATCAACCAACGCCAGCGTCTACACGGGCAAGCACCACCGCAG AACGTCGACGACGCCGCTGGACGGCGCGCGTCTGACGCTGCTGGGCGTGT CCAAGGCGCTCAACACTCCCGTATTGGACAACTGGGAGGTGGCCCGGGCG TTGCTGGAGTCCAACACCGACCTCCGGACAAGAAACGGCCGCGGGATGAC TCCTCTGCACTTGGCATGTTCAACTGGAGAGGTGGACGCGGCGAAGGTGC TGCTTCTCGCCGGCGCGGACTCCCACGCGAGAGACCACAGGTCCCGGTGC CCGCTGCACATGGCGGCCTTGTCTGGAAAGTCGGAGCTGGTGTCCTCCCT GCTCACGTGCGGTGCGGACCCCAACAAGGCGTCCGACCTCGGCACGACGG CACTCCACAACGCGGCGTTGCTGGGACGGGTGGAAGCGTCTCGGGCGCTG CTGGTGGCGGGTGCGGACCCGAATGCGATCGACCACAACTCTTTCTCTCC GCTCTACCTGGCGTCGCAGAACGGACACACACAGCTGGTGCTCGACCTGC TCGCCGCCGGCGCAGACACGAGTGTCAAGACCATCAGGGGCTTCACTCCC TTGCACGTGGCGGCAAGGTGCGGGCGCTTGACTGCCCTGAGGGCCCTCCT GGACGCCGGCGAGGCGTTGGACTCCCCGTCCACCCCCGCGGGCACCACCC CCCTCCACCTCGCGGCCGGGTTCTCGCGGCTGAGCTGCGTGAAGGAGCTG CTCCGGCGCGGCGCCGACCCTTCGAGGAAGAACAAGCGCGGTGCCACGCC GCTGGACATGGTGGGCACCCTCGTCATTCCAGTCAGCGCTCGCCCCTCCC CCGCCACCCAGGGCGGGCCCGAGACGATGAGCGGCAAGGCCAAGCTCGCC CGGGAGGCGTTCGAGAAGAACTTGGCGGAAGGGAAGCGGGTGAGGCTCGC CCTGGCGAGCGCGCAGAGGTGGCAGAGGAAACGGGGCATGGTGCTGGTGT GCGAGACTCTCCGCAAGAGGGCCAACGCTGTCCTCGCGCCTGCTGATGGC GCATCCGACGGGGGTGCGGTGGCAGGGAGTGAGCGGCTCGACCGCGACAA TGACGACAGCAAGCGCCGCTGCAGGCGTTCCCTAGCTGGCGAGCCGGTCG CAACGGCCGTCCCTGTCCAGGGTTGGCTGGTCGCGCAGCTCTGCGTGCAT GCCGACCCCGAGTTGATGAAGGGCGTCATTGAGTTTTTGTAA back to top
|