mRNA_Ecto-sp13_S_contig1965.6335.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1965.6335.1
Unique NamemRNA_Ecto-sp13_S_contig1965.6335.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1965.6335.1 vs. uniprot
Match: A0A6H5KCU2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCU2_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 3.010e-36
Identity = 64/72 (88.89%), Postives = 66/72 (91.67%), Query Frame = 1 
Query:   46 DVERPACYINWCLNAEACIVLKEDGVPVKVRLAGEDD---VGKRCRDYKRADPTMLDTDQLIAKSTQPFHVG 252
            DVERPAC+INWCLNAEACIVLK DGVPV VRLAGEDD   VGKRCRD KRADPT+LDTDQLIAKSTQPFHVG
Sbjct:  133 DVERPACHINWCLNAEACIVLKGDGVPVNVRLAGEDDANCVGKRCRDCKRADPTILDTDQLIAKSTQPFHVG 204
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BLAST of mRNA_Ecto-sp13_S_contig1965.6335.1 vs. uniprot
Match: D8LET1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LET1_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 4.290e-33
Identity = 56/68 (82.35%), Postives = 60/68 (88.24%), Query Frame = 1 
Query:   46 DVERPACYINWCLNAEACIVLKEDGVPVKVRLAGEDDVGKRCRDYKRADPTMLDTDQLIAKSTQPFHV 249
            DVERPACYINWCLN +ACI+LKE+G PV VRLAGEDDV KRC D KRAD T+LDTDQLIAKSTQP HV
Sbjct:  134 DVERPACYINWCLNEDACIILKEEGAPVNVRLAGEDDVAKRCSDCKRADSTILDTDQLIAKSTQPCHV 201
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BLAST of mRNA_Ecto-sp13_S_contig1965.6335.1 vs. uniprot
Match: D8LKW7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKW7_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 2.400e-12
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:   46 DVERPACYINWCLNAEACIVLKEDGVPVKVRLAGEDDV 159
            DVERPACYI WCLN +A I+LKE+GVPV  RLAGEDDV
Sbjct:  171 DVERPACYITWCLNGDAGIILKEEGVPVNARLAGEDDV 208
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1965.6335.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KCU2_9PHAE3.010e-3688.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LET1_ECTSI4.290e-3382.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LKW7_ECTSI2.400e-1278.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1965contigEcto-sp13_S_contig1965:2076..3136 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size252
Hectar predicted targeting categoryother localisation
Exons2
Cds size252
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462993.224307-CDS-Ecto-sp13_S_contig1965:2075..22311681462993.224307-CDS-Ecto-sp13_S_contig1965:2075..2231Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1965 2076..2231 +
1681462993.2426205-CDS-Ecto-sp13_S_contig1965:3040..31361681462993.2426205-CDS-Ecto-sp13_S_contig1965:3040..3136Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1965 3041..3136 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1965.6335.1prot_Ecto-sp13_S_contig1965.6335.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1965 2076..3136 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1965.6335.1

>prot_Ecto-sp13_S_contig1965.6335.1 ID=prot_Ecto-sp13_S_contig1965.6335.1|Name=mRNA_Ecto-sp13_S_contig1965.6335.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=84bp
MYVCMYVTFSFCDETDVERPACYINWCLNAEACIVLKEDGVPVKVRLAGE
DDVGKRCRDYKRADPTMLDTDQLIAKSTQPFHVG
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mRNA from alignment at Ecto-sp13_S_contig1965:2076..3136+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1965.6335.1 ID=mRNA_Ecto-sp13_S_contig1965.6335.1|Name=mRNA_Ecto-sp13_S_contig1965.6335.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1061bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1965:2076..3136+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTATGTATGCATGTATGTCACCTTCTCTTTTTGTGATGAAACAGACGT
GGAACGCCCGGCGTGCTATATTAACTGGTGCCTCAACGCCGAGGCCTGCA
TCGTCCTCAAGGAGGATGGCGTCCCCGTCAAAGTGAGGCTGGCCGGCGAG
GACGACGTAAGTATTTTATTTCTGTTTCACAAAACTATCTTTCCTGTCCC
TAACCCCTTCCGTCTGCCTGCCGAACACAACGCAACATCAAACATTTATT
TTATGTTCACGCCCGTCAAGATGCGCACTGCACGTGTTTGGCATGTGTCT
TGGTGTCCTTTCGCGTATGTATGTATATAGATATATATATGCGCACGCAC
ATGCTCGGTACAATGTGATCCTCCTTTTTGCTGCGAAAAGACAAACGCTG
ACAACGCAAGACACATAATTCCTTCGTTCCAACAGTAGTGCGTACACACC
ATTTGTTTTCGTGTTCCCGCCCGTTGCCGTGGAATTGCGCACATGTTCGG
TTATATGTAGTGTTCGCCCTGTCCTTCCTGCTGCGCAAAGACAAAATGCT
GACGCAAGACACAAGTTTGTGGCTCCTGCCGTCAAAATGCGCACTGCCAT
GAACACAACACCATAGATTTCCTGCCCGAACATATGCGCACGCACATGCT
CGGTACAACCACACATATTTTTTTGGTGTCTGACACCAACCATTATTTTC
AGCGTGAATATGCGCACTACATGTTCGTTATGTATAGTATGTGTTCCTGT
CTTTGCTGCTGCGCAAACACTCAATCAAGCTGACGCAGGACCTACTTCTT
TTTACATTCCTAGTGTTTGTGCACATTTTTTTTCTCGTGTTCCACGCCTT
TATTTTCAGTCCTCTTTGTCCTGTTCTTAACATCGCATTTGCCGCGCAAC
GACATAATGCTGACGCAGGACGCATCTTTTTTCCCTTCCACATTTGTCTC
GTGCAATTCATACAGGTTGGCAAGCGCTGCCGTGACTACAAACGTGCCGA
CCCGACCATGCTGGACACGGACCAGTTAATCGCCAAGTCCACCCAGCCCT
TCCACGTGGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1965:2076..3136+

>mRNA_Ecto-sp13_S_contig1965.6335.1 ID=mRNA_Ecto-sp13_S_contig1965.6335.1|Name=mRNA_Ecto-sp13_S_contig1965.6335.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=252bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1965:2076..3136+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTATGTATGCATGTATGTCACCTTCTCTTTTTGTGATGAAACAGACGT
GGAACGCCCGGCGTGCTATATTAACTGGTGCCTCAACGCCGAGGCCTGCA
TCGTCCTCAAGGAGGATGGCGTCCCCGTCAAAGTGAGGCTGGCCGGCGAG
GACGACGTTGGCAAGCGCTGCCGTGACTACAAACGTGCCGACCCGACCAT
GCTGGACACGGACCAGTTAATCGCCAAGTCCACCCAGCCCTTCCACGTGG
GC
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