mRNA_Ecto-sp13_S_contig1964.6331.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1964.6331.1
Unique NamemRNA_Ecto-sp13_S_contig1964.6331.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1964.6331.1 vs. uniprot
Match: A0A6H5JEE0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEE0_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 1.170e-11
Identity = 34/35 (97.14%), Postives = 34/35 (97.14%), Query Frame = 3 
Query:  150 MRREKRRRQGVGPCGAALLLVASLVPHSLAAGDFQ 254
            MRREKRRRQGVGPCGAALLLVASLVPHSLAAG FQ
Sbjct:    1 MRREKRRRQGVGPCGAALLLVASLVPHSLAAGGFQ 35
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1964.6331.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JEE0_9PHAE1.170e-1197.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1964contigEcto-sp13_S_contig1964:11059..12257 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size339
Hectar predicted targeting categorymitochondrion
Exons2
Cds size336
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462993.0308325-CDS-Ecto-sp13_S_contig1964:11058..113121681462993.0308325-CDS-Ecto-sp13_S_contig1964:11058..11312Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1964 11059..11312 +
1681462993.0411303-CDS-Ecto-sp13_S_contig1964:12174..122561681462993.0411303-CDS-Ecto-sp13_S_contig1964:12174..12256Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1964 12175..12256 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1964.6331.1prot_Ecto-sp13_S_contig1964.6331.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1964 11059..12256 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1964.6331.1

>prot_Ecto-sp13_S_contig1964.6331.1 ID=prot_Ecto-sp13_S_contig1964.6331.1|Name=mRNA_Ecto-sp13_S_contig1964.6331.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=112bp
PTKASRVWRVLPTACGVTCTRKSTHRFRGAATTDRANHKHQQFSSGGGTR
CGERRGDVKGSGRAVPPFCWWRPWCRTRWLLVTSRAVTTATRRPDHRHQA
GAPLVHPPTAKP
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mRNA from alignment at Ecto-sp13_S_contig1964:11059..12257+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1964.6331.1 ID=mRNA_Ecto-sp13_S_contig1964.6331.1|Name=mRNA_Ecto-sp13_S_contig1964.6331.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1199bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1964:11059..12257+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCAACAAAAGCTTCTCGTGTTTGGCGTGTACTGCCTACTGCTTGTGGTGT
TACTTGTACTCGGAAATCAACACATCGTTTCCGCGGGGCTGCAACAACAG
ACAGAGCGAACCACAAGCACCAGCAGTTCAGTAGTGGGGGTGGAACGCGA
TGCGGAGAGAGAAGAGGAGACGTCAAGGGGTCGGGCCGTGCGGTGCCGCC
CTTTTGCTGGTGGCGTCCCTGGTGCCGCACTCGCTGGCTGCTGGTGACTT
CCAGGTGAGACAGCAACAACAAAGACGTGTGTTTGTTTACTGTATTTTTT
TGAAAAAAATGTTGATTGCAACAACTCGACGAGGCTCCGCTCTGAACCAA
ACACAGGGAGACATACTCTGATACTGCCTCACGTACTCGGCTGCTGGTCG
GTGGCTCCTCCGATCATGAGTCTGCAGGTGAACGAGCACACACCGCAGCA
TGGTCATCTTGTAAGAGGACCGCCGCGGCACAACAACGCCAACGACGTGC
AAGACAAGTGCAAAATACTCCCTACAATGCGAGACACCTCACGCCCTCTG
TTCGCTCCGCGCGCCGCGTGGCTTCGCTACCGAGAAACTGCCCGCGCCCC
CCGCCCCATCCCTTGCCGTTCGTTTTGCGAACGGTTCTCTCCCAACAAAG
CAAACCCACGTTTTACTCTGAAAGAAATGCGGGAGGAATCCGATGAAAGG
ACGCGTGCAGTGAAAAACCCTCGGTCCTTGTCACTTGTTCAAATTTGGGA
ACGCCAGTAAAGTGCAGCAGTGGCAGTACTGGTGACGTATCGTTTGTCAC
GAGGACTGCGCCACCCGCCACGACACGGCGTTGCAGGAGATGAACGCCAT
TTCGCGTGCACTCAGCAGATCATCACGATTCCAACCATCTGCATGTGTAC
TGCTGCTGTACAACGTGTAGAACACATGCTCGACGGTCGGCATGGTCGAA
CTCCGTCCAGGGTGTACAACTAGTACATATACCGCTACACACCAGGGGCC
TGCCTGCCCTCTCTGTTAACCGAGGGCTTTGTTGCACCCCACGCGGCCGT
TCGCAAGCTTGTGACACCGAACCAATTATGTTGGTGCTTTTGGCCCACCC
CCATTCTGCTGCGCAGGGCAGTCACAACGGCAACGCGCCGCCCCGACCAC
CGTCATCAAGCAGGGGCGCCCCTGGTTCACCCGCCGACCGCGAAGCCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1964:11059..12257+

>mRNA_Ecto-sp13_S_contig1964.6331.1 ID=mRNA_Ecto-sp13_S_contig1964.6331.1|Name=mRNA_Ecto-sp13_S_contig1964.6331.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=336bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1964:11059..12257+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCAACAAAAGCTTCTCGTGTTTGGCGTGTACTGCCTACTGCTTGTGGTGT
TACTTGTACTCGGAAATCAACACATCGTTTCCGCGGGGCTGCAACAACAG
ACAGAGCGAACCACAAGCACCAGCAGTTCAGTAGTGGGGGTGGAACGCGA
TGCGGAGAGAGAAGAGGAGACGTCAAGGGGTCGGGCCGTGCGGTGCCGCC
CTTTTGCTGGTGGCGTCCCTGGTGCCGCACTCGCTGGCTGCTGGTGACTT
CCAGGGCAGTCACAACGGCAACGCGCCGCCCCGACCACCGTCATCAAGCA
GGGGCGCCCCTGGTTCACCCGCCGACCGCGAAGCCG
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