mRNA_Ecto-sp13_S_contig1964.6330.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1964.6330.1
Unique NamemRNA_Ecto-sp13_S_contig1964.6330.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1964.6330.1 vs. uniprot
Match: A0A6H5J8I8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8I8_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 4.340e-48
Identity = 83/86 (96.51%), Postives = 83/86 (96.51%), Query Frame = 2 
Query:  218 MADPGKRMPWGMKIGGLKPGAKETITDKKLKTFAVGKQKKSRLQKEREVKEEKKKEADVEAAKIYEQFVQSFDGGGADDGKTFLRG 475
            MADPGKRMPWGMKIGGLKPGAKETITDKKLK F VGKQKKSRLQKEREVKEEKKKEADVEAAKIYEQFVQSFDGGG DDGKTFLRG
Sbjct:    1 MADPGKRMPWGMKIGGLKPGAKETITDKKLKAFVVGKQKKSRLQKEREVKEEKKKEADVEAAKIYEQFVQSFDGGGPDDGKTFLRG 86
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1964.6330.1 vs. uniprot
Match: D7FSA5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSA5_ECTSI)

HSP 1 Score: 161 bits (408), Expect = 5.160e-43
Identity = 84/86 (97.67%), Postives = 84/86 (97.67%), Query Frame = 2 
Query:  218 MADPGKRMPWGMKIGGLKPGAKETITDKKLKTFAVGKQKKSRLQKEREVKEEKKKEADVEAAKIYEQFVQSFDGGGADDGKTFLRG 475
            MADPGKRMPWGMKIGGLKPGAKETITDKKLKTF VGKQKKSRLQKEREVKEEKKKEADVEAAKIYEQFVQSFDGGG DDGKTFLRG
Sbjct:    1 MADPGKRMPWGMKIGGLKPGAKETITDKKLKTFVVGKQKKSRLQKEREVKEEKKKEADVEAAKIYEQFVQSFDGGGPDDGKTFLRG 86
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1964.6330.1 vs. uniprot
Match: K3X1G9_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X1G9_GLOUD)

HSP 1 Score: 76.3 bits (186), Expect = 3.400e-13
Identity = 40/79 (50.63%), Postives = 57/79 (72.15%), Query Frame = 2 
Query:  239 MPWGMKIGGLKPGAKETITDKKLKTFAVGKQKKSRLQKEREVKEEKKKEADVEAAKIYEQFVQSFDGGGADDGKTFLRG 475
            +PWGM+   ++PG+   +TD KL  F +G+QKK++ +K+RE +E KK++AD EAAKIY QFV SF+   A  GK F+RG
Sbjct:   28 LPWGMEKTQMQPGSLTALTDDKLARFVIGQQKKTKFEKDREDREAKKRQADEEAAKIYAQFVASFEDEDATLGKAFVRG 106
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1964.6330.1 vs. uniprot
Match: A0A8B7Z1H0_ACAPL (U2 snRNP-associated SURP motif-containing protein-like n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7Z1H0_ACAPL)

HSP 1 Score: 64.7 bits (156), Expect = 3.660e-9
Identity = 35/81 (43.21%), Postives = 57/81 (70.37%), Query Frame = 2 
Query:  233 KRMPWGMKIGGLKPGAKETITDKKLKTFAVGKQKKSRLQKEREVKEEKKKEADVEAAKIYEQFVQSFDGGGADDGKTFLRG 475
            +++PWGM+  G+ PG+ +TI+  KLK F+VG+    +   +R  +E+KKK  + EAAK++E+FV SF+   ++ GKTF+RG
Sbjct:    3 EKLPWGMRNEGIAPGSMKTISQNKLKAFSVGQMNLGKKLSKRAEEEQKKKAQEKEAAKVFEEFVASFEDT-SNLGKTFVRG 82
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1964.6330.1 vs. uniprot
Match: A0A5D6Y506_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y506_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 3.680e-9
Identity = 41/98 (41.84%), Postives = 59/98 (60.20%), Query Frame = 2 
Query:  182 AGGA*TGVTAP-RMADPGKRMPWGMKIGGLKPGAKETITDKKLKTFAVGKQKKSRLQKEREVKEEKKKEADVEAAKIYEQFVQSFDGGGADDGKTFLR 472
            A GA  G  AP   A     +PWGM+   ++P +   +TD KL  FA+G+Q+K++ +KERE     K++AD EAA++Y  FV SF+   A  GK F+R
Sbjct:  208 AAGA--GAAAPSNAASDEPALPWGMQPQAMQPSSLARLTDDKLARFALGQQRKTKFEKEREXXXXXKRQADEEAAQMYATFVASFEDEDATLGKAFVR 303
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1964.6330.1 vs. uniprot
Match: A0A397GB48_9GLOM (RRM domain-containing protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397GB48_9GLOM)

HSP 1 Score: 62.8 bits (151), Expect = 1.340e-8
Identity = 39/84 (46.43%), Postives = 54/84 (64.29%), Query Frame = 2 
Query:  233 KRMPWGMKIGGLKPGAKETITDKKLKTFAVGKQKKSRLQKEREVKEEKKKEADVEAAKIYEQFVQSF---DGGGADDGKTFLRG 475
            K++PWG  I   KPG+ +T+T  KL+ F++G  KK+  QK +E  E KKK+   EAAK+Y +FV SF   DG G    KTF++G
Sbjct:    5 KKLPWG--INSTKPGSAKTLTKTKLQAFSIGTHKKTPFQKHKEELELKKKQESEEAAKVYAEFVASFEKEDGAG----KTFVKG 82
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1964.6330.1 vs. uniprot
Match: A0A015KLL3_RHIIW (Pub1p n=9 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A015KLL3_RHIIW)

HSP 1 Score: 62.4 bits (150), Expect = 2.090e-8
Identity = 39/82 (47.56%), Postives = 55/82 (67.07%), Query Frame = 2 
Query:  233 KRMPWGMKIGGLKPGAKETITDKKLKTFAVGKQKKSRLQKEREVKEEKKKEADVEAAKIYEQFVQSFDGG-GADDGKTFLRG 475
            K++PWG  I   KPG+ +T+T  KL+ F++G  KK+  QK +E  E KKK+   EAAK+Y +FV SF+   GA  GKTF++G
Sbjct:    5 KKLPWG--INATKPGSAKTLTKTKLQAFSIGTHKKTPFQKHKEELELKKKQESEEAAKVYAEFVASFEKEEGA--GKTFVKG 82
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1964.6330.1 vs. uniprot
Match: A0A015J1J6_RHIIW (Pub1p n=9 Tax=Glomeraceae TaxID=36751 RepID=A0A015J1J6_RHIIW)

HSP 1 Score: 62.4 bits (150), Expect = 2.230e-8
Identity = 39/82 (47.56%), Postives = 55/82 (67.07%), Query Frame = 2 
Query:  233 KRMPWGMKIGGLKPGAKETITDKKLKTFAVGKQKKSRLQKEREVKEEKKKEADVEAAKIYEQFVQSFDGG-GADDGKTFLRG 475
            K++PWG  I   KPG+ +T+T  KL+ F++G  KK+  QK +E  E KKK+   EAAK+Y +FV SF+   GA  GKTF++G
Sbjct:    5 KKLPWG--INATKPGSAKTLTKTKLQAFSIGTHKKTPFQKHKEELELKKKQESEEAAKVYAEFVASFEKEEGA--GKTFVKG 82
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1964.6330.1 vs. uniprot
Match: A0A0P1AT79_PLAHL (U2-associated splicing n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AT79_PLAHL)

HSP 1 Score: 62.0 bits (149), Expect = 3.090e-8
Identity = 35/69 (50.72%), Postives = 48/69 (69.57%), Query Frame = 2 
Query:  266 LKPGAKETITDKKLKTFAVGKQKKSRLQKEREVKEEKKKEADVEAAKIYEQFVQSFDGGGADDGKTFLR 472
            ++P +  ++TD KL  FA+G QKK++ QKERE +E KK++AD EAA+IY  FV SFD      GK F+R
Sbjct:    1 MQPSSLMSLTDDKLARFALGHQKKTKFQKEREDREAKKRQADEEAARIYATFVASFDNEDEIKGKAFVR 69
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1964.6330.1 vs. uniprot
Match: UPI001455AC63 (U2 snRNP-associated SURP motif-containing protein-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI001455AC63)

HSP 1 Score: 62.0 bits (149), Expect = 3.150e-8
Identity = 37/86 (43.02%), Postives = 57/86 (66.28%), Query Frame = 2 
Query:  218 MADPGKRMPWGMKIGGLKPGAKETITDKKLKTFAVGKQKKSRLQKEREVKEEKKKEADVEAAKIYEQFVQSFDGGGADDGKTFLRG 475
            MAD   ++PWGM+  G+ PG+ +TI+  KLK F+VG+    +   +R  +E +KK  + EAAK+YE+FV SF+   ++  KTF+RG
Sbjct:    1 MAD---KLPWGMQNEGITPGSMKTISQNKLKAFSVGQMNLGKKLSKRAEEEHRKKAQEKEAAKVYEEFVASFEDT-SNLAKTFVRG 82
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1964.6330.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5J8I8_9PHAE4.340e-4896.51Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FSA5_ECTSI5.160e-4397.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
K3X1G9_GLOUD3.400e-1350.63Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A8B7Z1H0_ACAPL3.660e-943.21U2 snRNP-associated SURP motif-containing protein-... [more]
A0A5D6Y506_9STRA3.680e-941.84Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A397GB48_9GLOM1.340e-846.43RRM domain-containing protein n=1 Tax=Diversispora... [more]
A0A015KLL3_RHIIW2.090e-847.56Pub1p n=9 Tax=Rhizophagus irregularis TaxID=588596... [more]
A0A015J1J6_RHIIW2.230e-847.56Pub1p n=9 Tax=Glomeraceae TaxID=36751 RepID=A0A015... [more]
A0A0P1AT79_PLAHL3.090e-850.72U2-associated splicing n=1 Tax=Plasmopara halstedi... [more]
UPI001455AC633.150e-843.02U2 snRNP-associated SURP motif-containing protein-... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1964contigEcto-sp13_S_contig1964:9071..10845 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size479
Hectar predicted targeting categoryother localisation
Exons2
Cds size477
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462992.9833162-CDS-Ecto-sp13_S_contig1964:9071..91961681462992.9833162-CDS-Ecto-sp13_S_contig1964:9071..9196Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1964 9072..9196 -
1681462992.9956245-CDS-Ecto-sp13_S_contig1964:10493..108451681462992.9956245-CDS-Ecto-sp13_S_contig1964:10493..10845Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1964 10494..10845 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1964.6330.1prot_Ecto-sp13_S_contig1964.6330.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1964 9072..10845 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1964.6330.1

>prot_Ecto-sp13_S_contig1964.6330.1 ID=prot_Ecto-sp13_S_contig1964.6330.1|Name=mRNA_Ecto-sp13_S_contig1964.6330.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=159bp
SLGVFLRTGGKRADTRNGTFVPLRSRPCRNRPDKVTLRETQLQHVEDRED
QPHSAVGVLFSRRGVDGGHSTEDGGSREEDALGHEDRRAQAGGEGDHHRQ
EAQDLRRRQAEEEQVAKGERGEGGEEEGGGRRSSQDLRAVRAVFRRRGGR
RREDFSQRG
back to top

mRNA from alignment at Ecto-sp13_S_contig1964:9071..10845-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1964.6330.1 ID=mRNA_Ecto-sp13_S_contig1964.6330.1|Name=mRNA_Ecto-sp13_S_contig1964.6330.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1775bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1964:9071..10845- (Ectocarpus species13 EcNAP12_S_4_19m)
TCGCTCGGTGTGTTTCTACGGACAGGAGGGAAAAGAGCAGACACGAGGAA
CGGGACTTTTGTTCCCTTGAGGTCACGACCCTGCCGAAACCGCCCGGACA
AGGTAACGTTAAGAGAGACTCAGCTGCAGCACGTGGAGGACAGAGAGGAT
CAACCTCATTCAGCTGTGGGTGTCTTATTTAGCAGGAGGGGCGTAGACGG
GGGTCACAGCACCGAGGATGGCGGATCCAGGGAAGAGGATGCCTTGGGGC
ATGAAGATCGGCGGGCTCAAGCCGGGGGCGAAGGAGACCATCACAGACAA
GAAGCTCAAGACCTTCGCCGTCGGCAAGCAGAAGAAGAGCAGGTTGCAAA
AGGTGTGTGCGACCCATCCCAACCTGCAAAGCGAAGGGGGTGATTTTCAG
TGAAATTTGTCTCGACTTGATTTTTACTCGATTCTACTGGAAAAATGGAG
CCCAGAGCCAGCAACGAGTCTATCTACTGTCTACGCTGCTTCGACAGCAC
GCATCCCTTTTGTGCAAAATCCCTTTCTCACTGATGCGTTGCTGTGACTG
CTTCGTTAATGTTTACTACGCAACGATGTGCAGTATGGTAAAATCCATTG
GTGATTGTCGTGTTTCGGGTATTTGCTGCAATTTCCTGCACGTTCCATAT
CTACTCAACGCTTCAAGCCTTGTTGCGGATGCCACGATAGCAGTATTAAG
CGACGCCCTCCGGCCTGATGAACCACACGAAGCACGCACGTGACCTCTCC
CAGCATTCGCAGCCACAAGCCCGCGGGTTATCCAGCAGTGTTCAATTCAT
GTCTTGCTTACACCTCGTGAGTGCAAGTAGTCTGCTGTAGACTTGGAGAG
GTACGAAATCCCGACTAAAATAGTCTTCCAGTCTTCCGCATGAAGGAAAG
GGATTATGATACCTGATGTCTCTCGCTGGAAATTGAATGCAAGCACGGTA
GGAAGAATGATGGAGAATTCCCTCTGTGTGACTCCGGCTTTTATTATGTG
TCAACAAGGTGTGCAGTGTAGCTGGCACCTTAGATGGGACGAGAAAAAAA
AAAAACTCGGTAAAATGTCAGCAGCCTGTCACCAAGTTGAGTGGATCAGT
TCCGTGCAGCACTAGCCTGCAACACCTCCTGGATGAAAGCCTCGCAGTCT
CCTTAGCTGGTTTCTTTTGCCGTTGCGCCCGTCCACCCCCCCCCTTAGCA
CCCAAACATGGTGCTACAGTGTCAAGTCTTGTCCTTCTTCATCGAATCCG
GAGGATATTCCCTGTCGTCCGATCTCTTTCGCAGACCCCCCCTCCCCCGT
CCCCCCCAAAGCGTGCCCCCCCCGATCGGGGGAGCCCGATGTCGAGAAAG
TGTGGTCCCTGTTTTTTTTCTATTCCGCCATTATTGGCTGGAGCGCTTTC
TTTGGACTGTCGATTGGCACCATCGATGCTGTTCAGAATCACGCTCGCTC
GCTCAAGAGGGCGGGCTCCCGCTAAATTTCTTGCTAGAAGAGGTGCACCA
CCCCTTCTTTTGGAGGTAGTTGGCTTGTGACCACCGAACGCGTCCTCGTT
GTGAGTCGGAACCAGTATTGTACGGATGCTGTAAGGTACTTCATGCGGAG
CCCGGATTTTAATGTGAAGACAACAACATCAACAACAACACAAACGCAGG
AGAGAGAGGTGAAGGAGGAGAAGAAGAAGGAGGCGGACGTAGAAGCAGCC
AAGATCTACGAGCAGTTCGTGCAGTCTTTCGACGGCGGGGGGGCCGACGA
CGGGAAGACTTTTCTCAGAGGGGGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1964:9071..10845-

>mRNA_Ecto-sp13_S_contig1964.6330.1 ID=mRNA_Ecto-sp13_S_contig1964.6330.1|Name=mRNA_Ecto-sp13_S_contig1964.6330.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=477bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1964:9071..10845- (Ectocarpus species13 EcNAP12_S_4_19m)
TCGCTCGGTGTGTTTCTACGGACAGGAGGGAAAAGAGCAGACACGAGGAA
CGGGACTTTTGTTCCCTTGAGGTCACGACCCTGCCGAAACCGCCCGGACA
AGGTAACGTTAAGAGAGACTCAGCTGCAGCACGTGGAGGACAGAGAGGAT
CAACCTCATTCAGCTGTGGGTGTCTTATTTAGCAGGAGGGGCGTAGACGG
GGGTCACAGCACCGAGGATGGCGGATCCAGGGAAGAGGATGCCTTGGGGC
ATGAAGATCGGCGGGCTCAAGCCGGGGGCGAAGGAGACCATCACAGACAA
GAAGCTCAAGACCTTCGCCGTCGGCAAGCAGAAGAAGAGCAGGTTGCAAA
AGGAGAGAGAGGTGAAGGAGGAGAAGAAGAAGGAGGCGGACGTAGAAGCA
GCCAAGATCTACGAGCAGTTCGTGCAGTCTTTCGACGGCGGGGGGGCCGA
CGACGGGAAGACTTTTCTCAGAGGGGG
back to top