mRNA_Ecto-sp13_S_contig19636.6329.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig19636.6329.1 vs. uniprot
Match: D7G408_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G408_ECTSI) HSP 1 Score: 652 bits (1683), Expect = 2.030e-233 Identity = 339/375 (90.40%), Postives = 349/375 (93.07%), Query Frame = 1
Query: 1 VGYAGKATYRPHQQRHRQRTHDTHT--LRQTRHRHLSCPAQPWMSMSAAGGENDAEAGDGSNGTEEEAARKDSSSAADGXXXXXXXXXXXXXXXXAADGAIDDGVQSGEGAAAEEDKGPVEKEQAEGEEEDEEGDTVFLPTGDNKDFRLFRAKLRAGSDEKWKEQLRRNVNVGQLAGQDAWAHELSAPEKGCLIVAKSTQFSMAQTYFNEAVIFLASYDEAGSAGFILNRPTSVQLGDLVEGNALRQFSKTPLYLGGDVGEGNVQILHPFGPDKLTDSMEIIPGVYIGGAVDEADRMVASGRAKVDDFKFMLHLCGWAPGQLEDEIERGVWMPVATSTNVILKHCLSLPVPMWREVMTLMGPKYGLLARDTYDDL 1119
VGYAGKAT RPHQQR +QRTHDT T +R TR RHLSCPAQPWMSMSAAG ENDAEAGDGSNGTEEEAARKD S+AADG AADGAIDDGVQSG+GAAAEEDKGPV+K++AEGEEED+EGDTVFLPTGDNKDFRLFRAKLRAGSDEKWKEQLRRNVNVGQLAGQDAWAHELSAPEKGCLIVAKSTQFSMAQTYFNEAVIFLASYDEAGSAGFILNRPTSVQLGDLVEGNALRQF KTPLYLGGDVGEGNVQILHPFGP+KLTDSMEIIPGVYIGGAVDEADRMVASGRAKVDDFKFMLHLCGWAPGQLEDEI+RGVWMPVATSTNVILKHCLSLPVPMWREVMTLMGPKYGLLARDTYDDL
Sbjct: 20 VGYAGKATSRPHQQRQQQRTHDTCTSSVRGTRCRHLSCPAQPWMSMSAAGRENDAEAGDGSNGTEEEAARKDGSNAADGADAGAAVVEAS-----AADGAIDDGVQSGQGAAAEEDKGPVKKKEAEGEEEDKEGDTVFLPTGDNKDFRLFRAKLRAGSDEKWKEQLRRNVNVGQLAGQDAWAHELSAPEKGCLIVAKSTQFSMAQTYFNEAVIFLASYDEAGSAGFILNRPTSVQLGDLVEGNALRQFQKTPLYLGGDVGEGNVQILHPFGPEKLTDSMEIIPGVYIGGAVDEADRMVASGRAKVDDFKFMLHLCGWAPGQLEDEIQRGVWMPVATSTNVILKHCLSLPVPMWREVMTLMGPKYGLLARDTYDDL 389
BLAST of mRNA_Ecto-sp13_S_contig19636.6329.1 vs. uniprot
Match: A0A6H5K1D3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1D3_9PHAE) HSP 1 Score: 433 bits (1114), Expect = 1.450e-148 Identity = 226/278 (81.29%), Postives = 233/278 (83.81%), Query Frame = 1
Query: 373 GEEEDEEGDTVFLPTGDNKDFRLFRAKLRAGSDEKWKEQLRRNVNVGQLAGQDAWAHELSAPEKGCLIVAKSTQFSMAQTYFNEAVIFLASYDEAGSAGFILNRPTSVQLGDLVEGNALRQFSKTPLYLGGDV------GEGNVQILH--------------PFGPDKLTDSMEIIPGVYIGGAVDEADRMVASGRAKVDDFKFMLHLCGWAPGQLEDEIERGVWMPVATSTNV---------ILKHCLSLPVPMWREVMTLMGPKYGLLARDTYDDL 1119
GEEE EEGDTVFLPTGDNKDFRLFRAKLRAGSDEKWKEQLRRNVNVGQLAGQDAWAHELSAPEKGCLI+AKSTQFSMAQTYFNEAVIFLASYDEAGSAGFILNRPTSVQLGDLVEGNALRQF K+PLYLGGDV G+ + H P PD+L+ P VYIGGAVDEADRMVASGRAKVDDFKFMLHLCGWAPGQLEDEI+RGVWMPVATSTNV ILKHCLSLPVPMWREVMTLMGPKYGLLARDTYDDL
Sbjct: 13 GEEEHEEGDTVFLPTGDNKDFRLFRAKLRAGSDEKWKEQLRRNVNVGQLAGQDAWAHELSAPEKGCLIIAKSTQFSMAQTYFNEAVIFLASYDEAGSAGFILNRPTSVQLGDLVEGNALRQFQKSPLYLGGDVVSSRKQGQIDCSTSHESSRLPPSTVVFAAPLSPDRLS-----APQVYIGGAVDEADRMVASGRAKVDDFKFMLHLCGWAPGQLEDEIQRGVWMPVATSTNVSCKNNWRQVILKHCLSLPVPMWREVMTLMGPKYGLLARDTYDDL 285
BLAST of mRNA_Ecto-sp13_S_contig19636.6329.1 vs. uniprot
Match: A0A836C8M7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8M7_9STRA) HSP 1 Score: 231 bits (588), Expect = 5.170e-69 Identity = 114/230 (49.57%), Postives = 158/230 (68.70%), Query Frame = 1
Query: 430 DFRLFRAKLRAGSDEKWKEQLRRNVNVGQLAGQDAWAHELSAPEKGCLIVAKSTQFSMAQTYFNEAVIFLASYDEAGSAGFILNRPTSVQLGDLVEGNALRQFSKTPLYLGGDVGEGNVQILHPFGPDKLTDSMEIIPGVYIGGAVDEADRMVASGRAKVDDFKFMLHLCGWAPGQLEDEIERGVWMPVATSTNVILKHCLSLPVPMWREVMTLMGPKYGLLARDTYDDL 1119
D+R FRAKL AGS+E W E+L+RNVN +L + WAHEL+APE GCL++A F+ ++ +++AVIFL ++ GS GF+LNRPT +G + G + F+ PL GGD+G G VQ++H F +++ + +II GVY+GG V +A VA G+AK DFKF L L G APG L+ E++ G W+ ATS +ILK C++LPVP+WREV+TLMG K+ +L R TY DL
Sbjct: 74 DWRRFRAKLIAGSEEAWHERLQRNVNP-RLKDVETWAHELAAPEPGCLLLASPDHFTGQESQYSQAVIFLVQHNANGSVGFVLNRPTQFTIGTVTTG--MEVFNACPLMWGGDLGRGTVQMVHAFDAERMPGARKIIDGVYVGGGVLDAQEAVARGQAKPGDFKFFLQLFGKAPGHLQAEMDAGKWICAATSKELILKPCINLPVPLWREVLTLMGGKHSILGRLTYGDL 300
BLAST of mRNA_Ecto-sp13_S_contig19636.6329.1 vs. uniprot
Match: C1MN92_MICPC (Predicted protein n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1MN92_MICPC) HSP 1 Score: 192 bits (489), Expect = 1.390e-53 Identity = 105/247 (42.51%), Postives = 139/247 (56.28%), Query Frame = 1
Query: 430 DFRLFRAKL-----------RAGSDEKWKEQLRRNVNVG-------QLAGQDAWAHELSAPEKGCLIVAKSTQFSMAQTYFNEAVIFLASYDEAGSAGFILNRPTSVQLGDLVEGNALRQFSKTPLYLGGDVGEGNVQILHPFGPDKLTDSMEIIPGVYIGGAVDEADRMVASGRAKVDDFKFMLHLCGWAPGQLEDEIERGVWMPVATSTNVILKHCLSLPVPMWREVMTLMGPKYGLLARDTYDD 1116
D+R FRAKL A +DE + + N+ +LA + WAH + APEKGCL++A +F + Q YF++AVI + + E GS G ILNRPT +G V G+ F+ LY GGDVG+G V LH G ++ E++PGVY+GG D A +V G K DFKF CGWAPGQLE E ERGVW PVA S + LK + LP P+WREVM L G + ++ +Y +
Sbjct: 118 DWRDFRAKLVNSESAGSDAPGASADEAARVEAASGENIKLLSTQNPELASETPWAHVIGAPEKGCLLLASEEEFKLGQQYFHQAVILVLEHHEKGSMGVILNRPTQYNMG-YVGGDDSSPFANNQLYFGGDVGDGTVSFLH--GSSEVAGGSEVLPGVYLGG-YDSACELVKDGTLKPTDFKFFARYCGWAPGQLESECERGVWYPVACSRQLALKQVIQLPKPLWREVMELCGGELRQTSKRSYGE 360
BLAST of mRNA_Ecto-sp13_S_contig19636.6329.1 vs. uniprot
Match: A4S673_OSTLU (Uncharacterized protein (Fragment) n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S673_OSTLU) HSP 1 Score: 189 bits (480), Expect = 3.740e-53 Identity = 101/223 (45.29%), Postives = 132/223 (59.19%), Query Frame = 1
Query: 445 RAKLRAGSDEKWKEQLRRNVNVGQLAGQDAWAHELSAPEKGCLIVAKSTQFSMAQTYFNEAVIFLASYDEAGSAGFILNRPTSVQLGDLVEGNALRQFSKTPLYLGGDVGEGNVQILHPFGPDKLTDSMEIIPGVYIGGAVDEADRMVASGRA-KVDDFKFMLHLCGWAPGQLEDEIERGVWMPVATSTNVILKHCLSLPVPMWREVMTLMGPKYGLLARDTY 1110
RA+ A S+E K +N +LA WAH + APEKGCL+VA +F M+Q YF++AVI + + E GS G ILNRPT +G V G A F+K LY GGDVG+G V LH G + + S+E++PGVY+GG + + G D+FKF CGWAPGQLE E ERGVW PVA + + LK + LP P+WRE+ L G + +AR Y
Sbjct: 49 RARAAAVSEENLKVLETQNP---RLAASAPWAHVIGAPEKGCLLVAADHEFRMSQQYFHQAVILVLEHHENGSMGVILNRPTQYDMG-YVSGEANGPFAKNALYFGGDVGDGTVSFLH--GREDVKGSVEVLPGVYLGGYDSACELVQQDGSTCHADEFKFFARYCGWAPGQLESECERGVWFPVAAAKELSLKQVIQLPKPLWREISELCGGELEEMARKAY 265
BLAST of mRNA_Ecto-sp13_S_contig19636.6329.1 vs. uniprot
Match: A0A1Y5IDK1_OSTTA (Uncharacterized protein n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A1Y5IDK1_OSTTA) HSP 1 Score: 190 bits (482), Expect = 4.670e-53 Identity = 106/256 (41.41%), Postives = 143/256 (55.86%), Query Frame = 1
Query: 382 EDEEGDTVFLPTGDNKDFRLFRAKLRAGSDEKWKEQL-----RRNVNV-----GQLAGQDAWAHELSAPEKGCLIVAKSTQFSMAQTYFNEAVIFLASYDEAGSAGFILNRPTSVQLGDLVEGNALRQFSKTPLYLGGDVGEGNVQILHPFGPDKLTDSMEIIPGVYIGGAVDEADRMVASGRA-KVDDFKFMLHLCGWAPGQLEDEIERGVWMPVATSTNVILKHCLSLPVPMWREVMTLMGPKYGLLARDTYDD 1116
ED GD + D+R FRA+L A E E+ N+ V +LA WAH ++APEKGCL+VA +F M+Q YF++AVI + + E GS G ILNRPT +G V G F++ LY GGDVG+G V LH G + + S+E++PGVY+GG + + G D+FKF CGWAPGQLE E ERGVW P+A + + LK + LP P+WRE++ L G + +A Y D
Sbjct: 52 EDGRGDGDDVAPALESDWREFRARLLAREREATPEERASAISEENMKVLEAQNPRLAQAKPWAHVIAAPEKGCLLVAADQEFRMSQQYFHQAVILVLEHHENGSMGIILNRPTQYNMG-YVSGEPSGPFAENALYFGGDVGDGTVSFLH--GREDVKGSVEVLPGVYLGGYESACELVQQDGSTCHPDEFKFFARYCGWAPGQLESECERGVWYPIAAAKELSLKQVIQLPKPLWREILELCGGELADIAARAYQD 304
BLAST of mRNA_Ecto-sp13_S_contig19636.6329.1 vs. uniprot
Match: C1E5G6_MICCC (Uncharacterized protein n=3 Tax=Micromonas TaxID=38832 RepID=C1E5G6_MICCC) HSP 1 Score: 189 bits (481), Expect = 2.410e-52 Identity = 103/244 (42.21%), Postives = 138/244 (56.56%), Query Frame = 1
Query: 418 GDNKDFRLFRAKLRAGSDEKWKE-----------QLRRNVNVGQLAGQDAWAHELSAPEKGCLIVAKSTQFSMAQTYFNEAVIFLASYDEAGSAGFILNRPTSVQLGDLVEGNALRQFSKTPLYLGGDVGEGNVQILHPFGPDKLTDSMEIIPGVYIGGAVDEADRMVASGRAKVDDFKFMLHLCGWAPGQLEDEIERGVWMPVATSTNVILKHCLSLPVPMWREVMTLMGPKYGLLARDTYDD 1116
GD +DFR G DE + +L R N +LA WAH + APEKGCL++A + +F++ Q YF++AVI L + + GS G ILNRPT +G V G + F++ LY GGDVG+G V LH G DK+ S E++PGVY+GG D A +V ++FKF CGWAPGQL+ E ERGVW PVA S + LK + LP P+WRE++ L G + A Y +
Sbjct: 126 GDWRDFRAMLISQEKGKDELVDDDEIAAASGPNLELLRKQNP-KLAKDKPWAHRIGAPEKGCLLLAAADEFTLGQQYFHQAVILLLEHHDKGSMGVILNRPTQYNMG-YVSGQSDGPFAENALYFGGDVGDGTVSFLH--GSDKVQGSAEVLPGVYLGG-YDSACELVKKEEVDANEFKFFARYCGWAPGQLKRECERGVWYPVACSKQLALKQVIQLPKPLWREILELCGGELKSAAARAYGE 364
BLAST of mRNA_Ecto-sp13_S_contig19636.6329.1 vs. uniprot
Match: A0A7S0D198_MICPS (Hypothetical protein n=2 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0D198_MICPS) HSP 1 Score: 189 bits (480), Expect = 5.860e-52 Identity = 104/254 (40.94%), Postives = 144/254 (56.69%), Query Frame = 1
Query: 391 EGDTVFLPTGDNKDFRLFRAKLRAGS------DEKWKE------QLRRNVNVGQLAGQDAWAHELSAPEKGCLIVAKSTQFSMAQTYFNEAVIFLASYDEAGSAGFILNRPTSVQLGDLVEGNALRQFSKTPLYLGGDVGEGNVQILHPFGPDKLTDSMEIIPGVYIGGAVDEADRMVASGRAKVDDFKFMLHLCGWAPGQLEDEIERGVWMPVATSTNVILKHCLSLPVPMWREVMTLMGPKYGLLARDTYDD 1116
E D GD +DFR + +G+ +EK +E +L R N LA + WAH + APE+GCL+VA+ F+ Q YF++AVI + ++E GS G ILNRPT +G V G+ F++ LY GGDVG+G V LH G +T S+E+ GV++GG + A +V +G + +D KF CGW PGQL+ E ERGVW PVA S + LK + LP P+WREV L+G G +R Y +
Sbjct: 128 EDDVAPALEGDWRDFRARLVSMESGAGSSTDEEEKVEEASGPNLELLREQNPA-LAAEKPWAHVIGAPERGCLLVARGDNFTQGQQYFHQAVILMLEHNEKGSMGVILNRPTQYSMG-YVSGDESGPFAQNALYFGGDVGDGTVSFLH--GSSSVTGSVEVSAGVFLGG-YESACELVKTGEVEANDCKFFARYCGWGPGQLQSECERGVWYPVACSKQIALKQVIQLPKPLWREVSELVGGDVGYESRKAYGE 376
BLAST of mRNA_Ecto-sp13_S_contig19636.6329.1 vs. uniprot
Match: A0A7S0PMA6_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0PMA6_9CHLO) HSP 1 Score: 184 bits (468), Expect = 4.900e-51 Identity = 104/223 (46.64%), Postives = 135/223 (60.54%), Query Frame = 1
Query: 430 DFRLFRAKLRAGSDE-KWKEQLRR-------NVNV-----GQLAGQDAWAHELSAPEKGCLIVAKSTQFSMAQTYFNEAVIFLASYDEAGSAGFILNRPTSVQLGDLVEGNALRQFSKTPLYLGGDVGEGNVQILHPFGPDKLTDSMEIIPGVYIGGAVDEADRMVASGRAKVDDFKFMLHLCGWAPGQLEDEIERGVWMPVATSTNVILKHCLSLPVPMWRE 1059
D+R FRAKL A K +E+ R N+ V +LA WAH ++APEKGCL+VA +F M+Q YF++AVI + + E GS G ILNRPT +G V G+ F+K LY GGDVG+G V LH G + + S+E++PG+Y+GG D A +V AK D+FKF CGWAPGQLE E ERGVW PVA + + LK + LP P+WRE
Sbjct: 99 DWREFRAKLLAQEKNVKLEEERARAMAASGENLKVLEAQNPKLASAAPWAHVIAAPEKGCLLVAADHEFRMSQQYFHQAVILVLEHHENGSMGVILNRPTQYDMG-YVSGDVDGVFAKNALYFGGDVGDGTVSFLH--GREDVKGSVEVLPGMYLGG-YDSACALVEEQGAKPDEFKFFARYCGWAPGQLESECERGVWFPVAGAKELALKQVIQLPKPLWRE 317
BLAST of mRNA_Ecto-sp13_S_contig19636.6329.1 vs. uniprot
Match: A0A5J4YWW8_PORPP (UPF0301 protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YWW8_PORPP) HSP 1 Score: 167 bits (424), Expect = 3.160e-44 Identity = 101/276 (36.59%), Postives = 149/276 (53.99%), Query Frame = 1
Query: 373 GEEEDEEGDTVF---LPTGDNKDFRLFRAKL------RAGSDEKWKEQL-------------------RRNVNVGQLAGQDAWAHELSAPEKGCLIVAKSTQFSMAQTYFNEAVIFLASYDEAGSAGFILNRPTSVQL-GDLVEGNALRQ----FSKTPLYLGGDVGEGNVQILHPFGPDKLTDSMEIIPGVYIGGAVDEADRMVASGRAKVDDFKFMLHLCGWAPGQLEDEIERGVWMPVATSTNVILKHCLSLPVPMWREVMTLMGPKYGLLAR 1101
GE+ DEEGD + D+R FRA+L AGS + +E +++ VG WAHE++ PE+GCL++A +FS Q+YF +AVI + ++ +GS GFILNRP + + G +EG+ +Q F+ +P+Y+GGDV G ++H PD L DS+E++ GVY GG R + D +F CGW+PGQLE EI+ GVW A S ++I C+ L P+WR+V+ LMG K+ +LA+
Sbjct: 73 GEDADEEGDASKRDRMGEEQEADWRAFRARLVAAERSGAGSQAQQEEDTGSGSARGKQQGRIEEGNSSQQDTGVGVGVDSGRWAHEVAVPERGCLLLAAPVRFSAQQSYFVQAVICIVEHNSSGSIGFILNRPLTYSMDGVELEGSVGKQLKVLFTSSPVYMGGDVSTGTFSVIHKV-PD-LPDSVEVVKGVYAGGLEGLVTRKLEGKPVDADCVRFFSGYCGWSPGQLEREIQDGVWYLAACSPDIITAPCIQLKRPLWRQVLDLMGGKFAILAK 346 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19636.6329.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig19636.6329.1 >prot_Ecto-sp13_S_contig19636.6329.1 ID=prot_Ecto-sp13_S_contig19636.6329.1|Name=mRNA_Ecto-sp13_S_contig19636.6329.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=333bp MSMSAAGGENDAEAGDGSNGTEEEAARKDSSSAADGADAGDAAAAAAAAEback to top mRNA from alignment at Ecto-sp13_S_contig19636:2..3266- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig19636.6329.1 ID=mRNA_Ecto-sp13_S_contig19636.6329.1|Name=mRNA_Ecto-sp13_S_contig19636.6329.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3265bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19636:2..3266- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19636:2..3266- >mRNA_Ecto-sp13_S_contig19636.6329.1 ID=mRNA_Ecto-sp13_S_contig19636.6329.1|Name=mRNA_Ecto-sp13_S_contig19636.6329.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=999bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19636:2..3266- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |