mRNA_Ecto-sp13_S_contig19636.6329.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19636.6329.1
Unique NamemRNA_Ecto-sp13_S_contig19636.6329.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig19636.6329.1 vs. uniprot
Match: D7G408_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G408_ECTSI)

HSP 1 Score: 652 bits (1683), Expect = 2.030e-233
Identity = 339/375 (90.40%), Postives = 349/375 (93.07%), Query Frame = 1
Query:    1 VGYAGKATYRPHQQRHRQRTHDTHT--LRQTRHRHLSCPAQPWMSMSAAGGENDAEAGDGSNGTEEEAARKDSSSAADGXXXXXXXXXXXXXXXXAADGAIDDGVQSGEGAAAEEDKGPVEKEQAEGEEEDEEGDTVFLPTGDNKDFRLFRAKLRAGSDEKWKEQLRRNVNVGQLAGQDAWAHELSAPEKGCLIVAKSTQFSMAQTYFNEAVIFLASYDEAGSAGFILNRPTSVQLGDLVEGNALRQFSKTPLYLGGDVGEGNVQILHPFGPDKLTDSMEIIPGVYIGGAVDEADRMVASGRAKVDDFKFMLHLCGWAPGQLEDEIERGVWMPVATSTNVILKHCLSLPVPMWREVMTLMGPKYGLLARDTYDDL 1119
            VGYAGKAT RPHQQR +QRTHDT T  +R TR RHLSCPAQPWMSMSAAG ENDAEAGDGSNGTEEEAARKD S+AADG                AADGAIDDGVQSG+GAAAEEDKGPV+K++AEGEEED+EGDTVFLPTGDNKDFRLFRAKLRAGSDEKWKEQLRRNVNVGQLAGQDAWAHELSAPEKGCLIVAKSTQFSMAQTYFNEAVIFLASYDEAGSAGFILNRPTSVQLGDLVEGNALRQF KTPLYLGGDVGEGNVQILHPFGP+KLTDSMEIIPGVYIGGAVDEADRMVASGRAKVDDFKFMLHLCGWAPGQLEDEI+RGVWMPVATSTNVILKHCLSLPVPMWREVMTLMGPKYGLLARDTYDDL
Sbjct:   20 VGYAGKATSRPHQQRQQQRTHDTCTSSVRGTRCRHLSCPAQPWMSMSAAGRENDAEAGDGSNGTEEEAARKDGSNAADGADAGAAVVEAS-----AADGAIDDGVQSGQGAAAEEDKGPVKKKEAEGEEEDKEGDTVFLPTGDNKDFRLFRAKLRAGSDEKWKEQLRRNVNVGQLAGQDAWAHELSAPEKGCLIVAKSTQFSMAQTYFNEAVIFLASYDEAGSAGFILNRPTSVQLGDLVEGNALRQFQKTPLYLGGDVGEGNVQILHPFGPEKLTDSMEIIPGVYIGGAVDEADRMVASGRAKVDDFKFMLHLCGWAPGQLEDEIQRGVWMPVATSTNVILKHCLSLPVPMWREVMTLMGPKYGLLARDTYDDL 389          
BLAST of mRNA_Ecto-sp13_S_contig19636.6329.1 vs. uniprot
Match: A0A6H5K1D3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1D3_9PHAE)

HSP 1 Score: 433 bits (1114), Expect = 1.450e-148
Identity = 226/278 (81.29%), Postives = 233/278 (83.81%), Query Frame = 1
Query:  373 GEEEDEEGDTVFLPTGDNKDFRLFRAKLRAGSDEKWKEQLRRNVNVGQLAGQDAWAHELSAPEKGCLIVAKSTQFSMAQTYFNEAVIFLASYDEAGSAGFILNRPTSVQLGDLVEGNALRQFSKTPLYLGGDV------GEGNVQILH--------------PFGPDKLTDSMEIIPGVYIGGAVDEADRMVASGRAKVDDFKFMLHLCGWAPGQLEDEIERGVWMPVATSTNV---------ILKHCLSLPVPMWREVMTLMGPKYGLLARDTYDDL 1119
            GEEE EEGDTVFLPTGDNKDFRLFRAKLRAGSDEKWKEQLRRNVNVGQLAGQDAWAHELSAPEKGCLI+AKSTQFSMAQTYFNEAVIFLASYDEAGSAGFILNRPTSVQLGDLVEGNALRQF K+PLYLGGDV      G+ +    H              P  PD+L+      P VYIGGAVDEADRMVASGRAKVDDFKFMLHLCGWAPGQLEDEI+RGVWMPVATSTNV         ILKHCLSLPVPMWREVMTLMGPKYGLLARDTYDDL
Sbjct:   13 GEEEHEEGDTVFLPTGDNKDFRLFRAKLRAGSDEKWKEQLRRNVNVGQLAGQDAWAHELSAPEKGCLIIAKSTQFSMAQTYFNEAVIFLASYDEAGSAGFILNRPTSVQLGDLVEGNALRQFQKSPLYLGGDVVSSRKQGQIDCSTSHESSRLPPSTVVFAAPLSPDRLS-----APQVYIGGAVDEADRMVASGRAKVDDFKFMLHLCGWAPGQLEDEIQRGVWMPVATSTNVSCKNNWRQVILKHCLSLPVPMWREVMTLMGPKYGLLARDTYDDL 285          
BLAST of mRNA_Ecto-sp13_S_contig19636.6329.1 vs. uniprot
Match: A0A836C8M7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8M7_9STRA)

HSP 1 Score: 231 bits (588), Expect = 5.170e-69
Identity = 114/230 (49.57%), Postives = 158/230 (68.70%), Query Frame = 1
Query:  430 DFRLFRAKLRAGSDEKWKEQLRRNVNVGQLAGQDAWAHELSAPEKGCLIVAKSTQFSMAQTYFNEAVIFLASYDEAGSAGFILNRPTSVQLGDLVEGNALRQFSKTPLYLGGDVGEGNVQILHPFGPDKLTDSMEIIPGVYIGGAVDEADRMVASGRAKVDDFKFMLHLCGWAPGQLEDEIERGVWMPVATSTNVILKHCLSLPVPMWREVMTLMGPKYGLLARDTYDDL 1119
            D+R FRAKL AGS+E W E+L+RNVN  +L   + WAHEL+APE GCL++A    F+  ++ +++AVIFL  ++  GS GF+LNRPT   +G +  G  +  F+  PL  GGD+G G VQ++H F  +++  + +II GVY+GG V +A   VA G+AK  DFKF L L G APG L+ E++ G W+  ATS  +ILK C++LPVP+WREV+TLMG K+ +L R TY DL
Sbjct:   74 DWRRFRAKLIAGSEEAWHERLQRNVNP-RLKDVETWAHELAAPEPGCLLLASPDHFTGQESQYSQAVIFLVQHNANGSVGFVLNRPTQFTIGTVTTG--MEVFNACPLMWGGDLGRGTVQMVHAFDAERMPGARKIIDGVYVGGGVLDAQEAVARGQAKPGDFKFFLQLFGKAPGHLQAEMDAGKWICAATSKELILKPCINLPVPLWREVLTLMGGKHSILGRLTYGDL 300          
BLAST of mRNA_Ecto-sp13_S_contig19636.6329.1 vs. uniprot
Match: C1MN92_MICPC (Predicted protein n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1MN92_MICPC)

HSP 1 Score: 192 bits (489), Expect = 1.390e-53
Identity = 105/247 (42.51%), Postives = 139/247 (56.28%), Query Frame = 1
Query:  430 DFRLFRAKL-----------RAGSDEKWKEQLRRNVNVG-------QLAGQDAWAHELSAPEKGCLIVAKSTQFSMAQTYFNEAVIFLASYDEAGSAGFILNRPTSVQLGDLVEGNALRQFSKTPLYLGGDVGEGNVQILHPFGPDKLTDSMEIIPGVYIGGAVDEADRMVASGRAKVDDFKFMLHLCGWAPGQLEDEIERGVWMPVATSTNVILKHCLSLPVPMWREVMTLMGPKYGLLARDTYDD 1116
            D+R FRAKL            A +DE  + +     N+        +LA +  WAH + APEKGCL++A   +F + Q YF++AVI +  + E GS G ILNRPT   +G  V G+    F+   LY GGDVG+G V  LH  G  ++    E++PGVY+GG  D A  +V  G  K  DFKF    CGWAPGQLE E ERGVW PVA S  + LK  + LP P+WREVM L G +    ++ +Y +
Sbjct:  118 DWRDFRAKLVNSESAGSDAPGASADEAARVEAASGENIKLLSTQNPELASETPWAHVIGAPEKGCLLLASEEEFKLGQQYFHQAVILVLEHHEKGSMGVILNRPTQYNMG-YVGGDDSSPFANNQLYFGGDVGDGTVSFLH--GSSEVAGGSEVLPGVYLGG-YDSACELVKDGTLKPTDFKFFARYCGWAPGQLESECERGVWYPVACSRQLALKQVIQLPKPLWREVMELCGGELRQTSKRSYGE 360          
BLAST of mRNA_Ecto-sp13_S_contig19636.6329.1 vs. uniprot
Match: A4S673_OSTLU (Uncharacterized protein (Fragment) n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S673_OSTLU)

HSP 1 Score: 189 bits (480), Expect = 3.740e-53
Identity = 101/223 (45.29%), Postives = 132/223 (59.19%), Query Frame = 1
Query:  445 RAKLRAGSDEKWKEQLRRNVNVGQLAGQDAWAHELSAPEKGCLIVAKSTQFSMAQTYFNEAVIFLASYDEAGSAGFILNRPTSVQLGDLVEGNALRQFSKTPLYLGGDVGEGNVQILHPFGPDKLTDSMEIIPGVYIGGAVDEADRMVASGRA-KVDDFKFMLHLCGWAPGQLEDEIERGVWMPVATSTNVILKHCLSLPVPMWREVMTLMGPKYGLLARDTY 1110
            RA+  A S+E  K    +N    +LA    WAH + APEKGCL+VA   +F M+Q YF++AVI +  + E GS G ILNRPT   +G  V G A   F+K  LY GGDVG+G V  LH  G + +  S+E++PGVY+GG     + +   G     D+FKF    CGWAPGQLE E ERGVW PVA +  + LK  + LP P+WRE+  L G +   +AR  Y
Sbjct:   49 RARAAAVSEENLKVLETQNP---RLAASAPWAHVIGAPEKGCLLVAADHEFRMSQQYFHQAVILVLEHHENGSMGVILNRPTQYDMG-YVSGEANGPFAKNALYFGGDVGDGTVSFLH--GREDVKGSVEVLPGVYLGGYDSACELVQQDGSTCHADEFKFFARYCGWAPGQLESECERGVWFPVAAAKELSLKQVIQLPKPLWREISELCGGELEEMARKAY 265          
BLAST of mRNA_Ecto-sp13_S_contig19636.6329.1 vs. uniprot
Match: A0A1Y5IDK1_OSTTA (Uncharacterized protein n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A1Y5IDK1_OSTTA)

HSP 1 Score: 190 bits (482), Expect = 4.670e-53
Identity = 106/256 (41.41%), Postives = 143/256 (55.86%), Query Frame = 1
Query:  382 EDEEGDTVFLPTGDNKDFRLFRAKLRAGSDEKWKEQL-----RRNVNV-----GQLAGQDAWAHELSAPEKGCLIVAKSTQFSMAQTYFNEAVIFLASYDEAGSAGFILNRPTSVQLGDLVEGNALRQFSKTPLYLGGDVGEGNVQILHPFGPDKLTDSMEIIPGVYIGGAVDEADRMVASGRA-KVDDFKFMLHLCGWAPGQLEDEIERGVWMPVATSTNVILKHCLSLPVPMWREVMTLMGPKYGLLARDTYDD 1116
            ED  GD   +      D+R FRA+L A   E   E+        N+ V      +LA    WAH ++APEKGCL+VA   +F M+Q YF++AVI +  + E GS G ILNRPT   +G  V G     F++  LY GGDVG+G V  LH  G + +  S+E++PGVY+GG     + +   G     D+FKF    CGWAPGQLE E ERGVW P+A +  + LK  + LP P+WRE++ L G +   +A   Y D
Sbjct:   52 EDGRGDGDDVAPALESDWREFRARLLAREREATPEERASAISEENMKVLEAQNPRLAQAKPWAHVIAAPEKGCLLVAADQEFRMSQQYFHQAVILVLEHHENGSMGIILNRPTQYNMG-YVSGEPSGPFAENALYFGGDVGDGTVSFLH--GREDVKGSVEVLPGVYLGGYESACELVQQDGSTCHPDEFKFFARYCGWAPGQLESECERGVWYPIAAAKELSLKQVIQLPKPLWREILELCGGELADIAARAYQD 304          
BLAST of mRNA_Ecto-sp13_S_contig19636.6329.1 vs. uniprot
Match: C1E5G6_MICCC (Uncharacterized protein n=3 Tax=Micromonas TaxID=38832 RepID=C1E5G6_MICCC)

HSP 1 Score: 189 bits (481), Expect = 2.410e-52
Identity = 103/244 (42.21%), Postives = 138/244 (56.56%), Query Frame = 1
Query:  418 GDNKDFRLFRAKLRAGSDEKWKE-----------QLRRNVNVGQLAGQDAWAHELSAPEKGCLIVAKSTQFSMAQTYFNEAVIFLASYDEAGSAGFILNRPTSVQLGDLVEGNALRQFSKTPLYLGGDVGEGNVQILHPFGPDKLTDSMEIIPGVYIGGAVDEADRMVASGRAKVDDFKFMLHLCGWAPGQLEDEIERGVWMPVATSTNVILKHCLSLPVPMWREVMTLMGPKYGLLARDTYDD 1116
            GD +DFR        G DE   +           +L R  N  +LA    WAH + APEKGCL++A + +F++ Q YF++AVI L  + + GS G ILNRPT   +G  V G +   F++  LY GGDVG+G V  LH  G DK+  S E++PGVY+GG  D A  +V       ++FKF    CGWAPGQL+ E ERGVW PVA S  + LK  + LP P+WRE++ L G +    A   Y +
Sbjct:  126 GDWRDFRAMLISQEKGKDELVDDDEIAAASGPNLELLRKQNP-KLAKDKPWAHRIGAPEKGCLLLAAADEFTLGQQYFHQAVILLLEHHDKGSMGVILNRPTQYNMG-YVSGQSDGPFAENALYFGGDVGDGTVSFLH--GSDKVQGSAEVLPGVYLGG-YDSACELVKKEEVDANEFKFFARYCGWAPGQLKRECERGVWYPVACSKQLALKQVIQLPKPLWREILELCGGELKSAAARAYGE 364          
BLAST of mRNA_Ecto-sp13_S_contig19636.6329.1 vs. uniprot
Match: A0A7S0D198_MICPS (Hypothetical protein n=2 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0D198_MICPS)

HSP 1 Score: 189 bits (480), Expect = 5.860e-52
Identity = 104/254 (40.94%), Postives = 144/254 (56.69%), Query Frame = 1
Query:  391 EGDTVFLPTGDNKDFRLFRAKLRAGS------DEKWKE------QLRRNVNVGQLAGQDAWAHELSAPEKGCLIVAKSTQFSMAQTYFNEAVIFLASYDEAGSAGFILNRPTSVQLGDLVEGNALRQFSKTPLYLGGDVGEGNVQILHPFGPDKLTDSMEIIPGVYIGGAVDEADRMVASGRAKVDDFKFMLHLCGWAPGQLEDEIERGVWMPVATSTNVILKHCLSLPVPMWREVMTLMGPKYGLLARDTYDD 1116
            E D      GD +DFR     + +G+      +EK +E      +L R  N   LA +  WAH + APE+GCL+VA+   F+  Q YF++AVI +  ++E GS G ILNRPT   +G  V G+    F++  LY GGDVG+G V  LH  G   +T S+E+  GV++GG  + A  +V +G  + +D KF    CGW PGQL+ E ERGVW PVA S  + LK  + LP P+WREV  L+G   G  +R  Y +
Sbjct:  128 EDDVAPALEGDWRDFRARLVSMESGAGSSTDEEEKVEEASGPNLELLREQNPA-LAAEKPWAHVIGAPERGCLLVARGDNFTQGQQYFHQAVILMLEHNEKGSMGVILNRPTQYSMG-YVSGDESGPFAQNALYFGGDVGDGTVSFLH--GSSSVTGSVEVSAGVFLGG-YESACELVKTGEVEANDCKFFARYCGWGPGQLQSECERGVWYPVACSKQIALKQVIQLPKPLWREVSELVGGDVGYESRKAYGE 376          
BLAST of mRNA_Ecto-sp13_S_contig19636.6329.1 vs. uniprot
Match: A0A7S0PMA6_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0PMA6_9CHLO)

HSP 1 Score: 184 bits (468), Expect = 4.900e-51
Identity = 104/223 (46.64%), Postives = 135/223 (60.54%), Query Frame = 1
Query:  430 DFRLFRAKLRAGSDE-KWKEQLRR-------NVNV-----GQLAGQDAWAHELSAPEKGCLIVAKSTQFSMAQTYFNEAVIFLASYDEAGSAGFILNRPTSVQLGDLVEGNALRQFSKTPLYLGGDVGEGNVQILHPFGPDKLTDSMEIIPGVYIGGAVDEADRMVASGRAKVDDFKFMLHLCGWAPGQLEDEIERGVWMPVATSTNVILKHCLSLPVPMWRE 1059
            D+R FRAKL A     K +E+  R       N+ V      +LA    WAH ++APEKGCL+VA   +F M+Q YF++AVI +  + E GS G ILNRPT   +G  V G+    F+K  LY GGDVG+G V  LH  G + +  S+E++PG+Y+GG  D A  +V    AK D+FKF    CGWAPGQLE E ERGVW PVA +  + LK  + LP P+WRE
Sbjct:   99 DWREFRAKLLAQEKNVKLEEERARAMAASGENLKVLEAQNPKLASAAPWAHVIAAPEKGCLLVAADHEFRMSQQYFHQAVILVLEHHENGSMGVILNRPTQYDMG-YVSGDVDGVFAKNALYFGGDVGDGTVSFLH--GREDVKGSVEVLPGMYLGG-YDSACALVEEQGAKPDEFKFFARYCGWAPGQLESECERGVWFPVAGAKELALKQVIQLPKPLWRE 317          
BLAST of mRNA_Ecto-sp13_S_contig19636.6329.1 vs. uniprot
Match: A0A5J4YWW8_PORPP (UPF0301 protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YWW8_PORPP)

HSP 1 Score: 167 bits (424), Expect = 3.160e-44
Identity = 101/276 (36.59%), Postives = 149/276 (53.99%), Query Frame = 1
Query:  373 GEEEDEEGDTVF---LPTGDNKDFRLFRAKL------RAGSDEKWKEQL-------------------RRNVNVGQLAGQDAWAHELSAPEKGCLIVAKSTQFSMAQTYFNEAVIFLASYDEAGSAGFILNRPTSVQL-GDLVEGNALRQ----FSKTPLYLGGDVGEGNVQILHPFGPDKLTDSMEIIPGVYIGGAVDEADRMVASGRAKVDDFKFMLHLCGWAPGQLEDEIERGVWMPVATSTNVILKHCLSLPVPMWREVMTLMGPKYGLLAR 1101
            GE+ DEEGD      +      D+R FRA+L       AGS  + +E                     +++  VG       WAHE++ PE+GCL++A   +FS  Q+YF +AVI +  ++ +GS GFILNRP +  + G  +EG+  +Q    F+ +P+Y+GGDV  G   ++H   PD L DS+E++ GVY GG      R +       D  +F    CGW+PGQLE EI+ GVW   A S ++I   C+ L  P+WR+V+ LMG K+ +LA+
Sbjct:   73 GEDADEEGDASKRDRMGEEQEADWRAFRARLVAAERSGAGSQAQQEEDTGSGSARGKQQGRIEEGNSSQQDTGVGVGVDSGRWAHEVAVPERGCLLLAAPVRFSAQQSYFVQAVICIVEHNSSGSIGFILNRPLTYSMDGVELEGSVGKQLKVLFTSSPVYMGGDVSTGTFSVIHKV-PD-LPDSVEVVKGVYAGGLEGLVTRKLEGKPVDADCVRFFSGYCGWSPGQLEREIQDGVWYLAACSPDIITAPCIQLKRPLWRQVLDLMGGKFAILAK 346          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19636.6329.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G408_ECTSI2.030e-23390.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K1D3_9PHAE1.450e-14881.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C8M7_9STRA5.170e-6949.57Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
C1MN92_MICPC1.390e-5342.51Predicted protein n=2 Tax=Micromonas pusilla TaxID... [more]
A4S673_OSTLU3.740e-5345.29Uncharacterized protein (Fragment) n=1 Tax=Ostreoc... [more]
A0A1Y5IDK1_OSTTA4.670e-5341.41Uncharacterized protein n=2 Tax=Ostreococcus tauri... [more]
C1E5G6_MICCC2.410e-5242.21Uncharacterized protein n=3 Tax=Micromonas TaxID=3... [more]
A0A7S0D198_MICPS5.860e-5240.94Hypothetical protein n=2 Tax=Micromonas pusilla Ta... [more]
A0A7S0PMA6_9CHLO4.900e-5146.64Hypothetical protein (Fragment) n=1 Tax=Ostreococc... [more]
A0A5J4YWW8_PORPP3.160e-4436.59UPF0301 protein n=1 Tax=Porphyridium purpureum Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19636contigEcto-sp13_S_contig19636:2..3266 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score598.6
Seed ortholog evalue1.8e-168
Seed eggNOG ortholog2880.D7G408
Model size1377
KEGG koko:K07735
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.Uncharacterized ACR, COG1678
EggNOG OGs2QRDU@2759,COG1678@1
Ec32 ortholog descriptionProtein of unknown function UPF0301
Ec32 orthologEc-19_000560.1
Cds size999
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19636.6329.1prot_Ecto-sp13_S_contig19636.6329.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19636 257..3143 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462992.8802385-UTR-Ecto-sp13_S_contig19636:1..2561681462992.8802385-UTR-Ecto-sp13_S_contig19636:1..256Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19636 2..256 -
1681462992.953814-UTR-Ecto-sp13_S_contig19636:3143..32661681462992.953814-UTR-Ecto-sp13_S_contig19636:3143..3266Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19636 3144..3266 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462992.8944051-CDS-Ecto-sp13_S_contig19636:256..3671681462992.8944051-CDS-Ecto-sp13_S_contig19636:256..367Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19636 257..367 -
1681462992.9046147-CDS-Ecto-sp13_S_contig19636:546..7111681462992.9046147-CDS-Ecto-sp13_S_contig19636:546..711Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19636 547..711 -
1681462992.9139347-CDS-Ecto-sp13_S_contig19636:1074..11481681462992.9139347-CDS-Ecto-sp13_S_contig19636:1074..1148Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19636 1075..1148 -
1681462992.9225435-CDS-Ecto-sp13_S_contig19636:1585..17331681462992.9225435-CDS-Ecto-sp13_S_contig19636:1585..1733Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19636 1586..1733 -
1681462992.9310448-CDS-Ecto-sp13_S_contig19636:1942..21931681462992.9310448-CDS-Ecto-sp13_S_contig19636:1942..2193Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19636 1943..2193 -
1681462992.9394536-CDS-Ecto-sp13_S_contig19636:2893..31431681462992.9394536-CDS-Ecto-sp13_S_contig19636:2893..3143Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19636 2894..3143 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19636.6329.1

>prot_Ecto-sp13_S_contig19636.6329.1 ID=prot_Ecto-sp13_S_contig19636.6329.1|Name=mRNA_Ecto-sp13_S_contig19636.6329.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=333bp
MSMSAAGGENDAEAGDGSNGTEEEAARKDSSSAADGADAGDAAAAAAAAE
ASAADGAIDDGVQSGEGAAAEEDKGPVEKEQAEGEEEDEEGDTVFLPTGD
NKDFRLFRAKLRAGSDEKWKEQLRRNVNVGQLAGQDAWAHELSAPEKGCL
IVAKSTQFSMAQTYFNEAVIFLASYDEAGSAGFILNRPTSVQLGDLVEGN
ALRQFSKTPLYLGGDVGEGNVQILHPFGPDKLTDSMEIIPGVYIGGAVDE
ADRMVASGRAKVDDFKFMLHLCGWAPGQLEDEIERGVWMPVATSTNVILK
HCLSLPVPMWREVMTLMGPKYGLLARDTYDDL*
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mRNA from alignment at Ecto-sp13_S_contig19636:2..3266-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19636.6329.1 ID=mRNA_Ecto-sp13_S_contig19636.6329.1|Name=mRNA_Ecto-sp13_S_contig19636.6329.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3265bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19636:2..3266- (Ectocarpus species13 EcNAP12_S_4_19m)
GTCGGTTACGCTGGGAAAGCGACATATAGGCCGCATCAACAGCGGCATCG CCAGCGGACACATGATACACATACTTTACGTCAAACTAGACATCGACACC TCTCTTGCCCAGCGCAGCCATGGATGTCGATGTCCGCGGCTGGTGGCGAG AACGATGCTGAAGCGGGAGATGGCAGTAATGGGACCGAGGAAGAAGCCGC CCGTAAGGATAGTAGCAGTGCTGCCGATGGGGCCGATGCGGGTGACGCTG CTGCTGCTGCTGCTGCTGCTGAAGCCTCTGCTGCTGACGGGGCGATAGAC GACGGTGTACAAAGTGGGGAGGGCGCAGCAGCAGAGGAGGACAAGGGACC AGTAGAGAAGGAACAGGCAGAAGGTAGGGATGCGCGTTCGTCGCAGCGCC AAGAAGGCAATCTCTGTTTTCGAACTGTTGCGAAACAATCGAGGTAAGCA ACAACAGCTACTTGCGCTGTACATCCAGTTTGCCCCCGTCGATCGGTTTG TGCATACGGAGGTCAACATCTGTCGCGGGTCCAACCCAACGGAGGCGCTG TAGCGATCTGTAGTACAGGCAGGGAGAAGCGTTTTGATTTTGTAATACTA CTTGCGTGCGTGCACATTATGAACCTGGTGTGGTCTACAAGCAATGCCCG TTGTAACGCAGATACATGACGGATAAGTGTAGCCCCTCTGAGTTGACGGC GTCGTCCTCGACAGACAGGCGTTGGGAAAGTTGCACCCTTTTTGAATGGG ATCTCCACATCAGGCCCCTCCCTTGTCGTCTTCTTAGTTGCTAGGCAAGT GTTGATATTACATGTTGACTTGCACCACGTGGACCAACCGCCTTGTTCGG TATGGAAAGACGAAAACAAGGAGCATGAACAAAGCTGACGATACGACTGG CGCTCAGGAGCAACACAGCGTGCCATGGTTTGTACGCGGGAGTCATTCCC CGCTTTGTGTGTTACGCAGCAGCAGCAGCAGCAGCAGCAGCGTCGGCGGC AGTTAAACACACCTCCGATGATTTGTCATTTCTTTTCTACTGCCTGTTTG TTTCACCGTACGTTTGGCGTCAGGTGAGGAAGAGGACGAGGAGGGAGACA CCGTTTTCTTGCCGACAGGAGACAACAAAGACTTTCGGCTGTTTCGCGCG AAGCTGAGGGCCGGGTCTGACGAGAAGTGGAAAGAGCAGCTCCGAAGAAA CGTTAACGTTGGGCAGCTCGCAGGGCAGGATGCCTGGGCGCACGAGCTCA GCGCCCCCGAAAAGGGCTGCCTGATCGTTGCCAAGAGCACCCAGTTCAGT ATGGCCCAAACGTACTTCAACGAGGTAAAGCCATCTTTGGTCGGCCGTTT CAAATTGCGGTACCAGGCAGCCGTCGGCCGAGTAGCGGACGCACAACGCC GAGGTTGTTCGTAGCACTCTCGTCGGCCATTGCCGCCAACCAACGGCGGC AGCTTCGACGAAGATACGGAACGCCCGCTCGGTGTGTGTTGTCTCCTTCG ACATATTTTTTCACATATTGTATGTCTAATCAGGCTGTAATTTTCTTGGC GAGCTACGACGAGGCTGGGTCGGCGGGGTTCATCCTTAACAGACCAACGT CCGTGCAGCTGGGAGACTTGGTCGAGGGCAACGCGCTGCGGCAGTTTTCG AAAACCCCCCTTTACCTAGGGGGCGACGTCGGTAAGTGATGTCATGACGT GCCCATCCCCATCGGAGGGGACTCGTGTTCTTTAGAAGCCGAAAAAAACA ATCGAGACTTGGTTTGACATCGTTTTCTACGAAATTTGTCGTTGGGTTCG AATGCCCCAACGTATGGTCCGTTTCGTGCAGTTCGAAACCATCTGTCCAC ATTAATTTGTCCGTGCTTGTTGGCTGGCCTCCGCTTGAGCCTCAATGACA GTTGCCCACAGGCCCTCGGCGCGGCAGCTGGTACTTGCGTAGCACCAGCT TCCCGGCTAGGAGCCCACTCGGCGACGAGAAGCGGTTGTTTGACTCCCCC GCGAACTCCGTGTGGACCCGCGTTACACACCGTGTTCTTTTTAAGCCCCT TCGTCCCTGACGCCGGCTGTACGATGTTCGGGCTGTGGACCGTCACGACT GTACGTTTTTTCTCTCAGGGGAAGGAAACGTTCAGATTTTGCACCCGTTC GGGCCGGATAAGCTCACCGACAGCATGGAAATCATCCCGGGCGTGAGTAT CCAATGATACGAGTACTGTATTCACAAAAACGCGTTCGCATTTGACGTGG GCTTTCCGAGCTCGATCGATTGCCTTGCAACGACGGTGTGTGTCCATCCC GAACGATCGGCGATGTCATCCAATTTGCCTTTCGTGTCGATTGTTTTTGT TTGTTGTTTCCCGTGTCAATTTTTTTCGGCAGTCCACGCTTTTCCGTTGT CCCCCATATGTCCTTTGCTACAGATCAGTGTCTTCCCGAAAGCAAGGGCA AATCAATTTTTCCGCTACGCGCGCCCTTTTGAATCGTCTCGCCCCCCCCC TCCCACCGTGGTGTTCACTGCTCCCCTCTCTCCGGACCGGTTATCTGCTC CGCAGGTCTACATCGGCGGAGCGGTGGACGAGGCTGACCGTATGGTGGCA TCTGGGAGAGCCAAAGTAGACGACTTCAAGTTCATGCTACACCTGTGCGG CTGGGCGCCGGGGCAGCTAGAGGACGAGATTGAACGAGGCGTGTGGATGC CCGTAGCGACGTCGACCAACGTGAGTTTGCTAGAACAAATTCCGTCACGT GTGTGTGTTGATTGATCCCCCTTGGAATTTGTTTTGTATTTTTTTTCTTC ATCTGGCAAGAGGGGTCTTTGTTCCTCCTTCCAAGAAGTTATTTCGAACT CGAAGAAGCGCCCCAACCCGCGCTGCACTCTGTCCCTGGCTTCCCGCAGG TGATATTGAAGCACTGCCTATCCCTGCCGGTTCCGATGTGGAGAGAGGTC ATGACCCTTATGGGCCCCAAGTACGGCCTGCTCGCGAGAGACACGTACGA CGACCTGTGATTCTACTCCTATTCGTGGAGACGGGGTATTTCCTGTCGAA GATCACTTGGCAAGACTCGGAATAGGTGTAACAACCTTTTTCGGAACCTG GGTGTGGCGACGTTGCGGTCCGCTTCGCATTTACATTTTTTTACTTCCCA AGCGCTAGGAGTCAGCCGCGTTTTGAGCTTGGAGTGCGCCGTCTAAGAAC AAAATATCGGCACCCTCTTCGCCCGACATGTGCCGTTGTCGAACCTTGTA TTAATGTCTTTCAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19636:2..3266-

>mRNA_Ecto-sp13_S_contig19636.6329.1 ID=mRNA_Ecto-sp13_S_contig19636.6329.1|Name=mRNA_Ecto-sp13_S_contig19636.6329.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=999bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19636:2..3266- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGATGTCCGCGGCTGGTGGCGAGAACGATGCTGAAGCGGGAGATGG
CAGTAATGGGACCGAGGAAGAAGCCGCCCGTAAGGATAGTAGCAGTGCTG
CCGATGGGGCCGATGCGGGTGACGCTGCTGCTGCTGCTGCTGCTGCTGAA
GCCTCTGCTGCTGACGGGGCGATAGACGACGGTGTACAAAGTGGGGAGGG
CGCAGCAGCAGAGGAGGACAAGGGACCAGTAGAGAAGGAACAGGCAGAAG
GTGAGGAAGAGGACGAGGAGGGAGACACCGTTTTCTTGCCGACAGGAGAC
AACAAAGACTTTCGGCTGTTTCGCGCGAAGCTGAGGGCCGGGTCTGACGA
GAAGTGGAAAGAGCAGCTCCGAAGAAACGTTAACGTTGGGCAGCTCGCAG
GGCAGGATGCCTGGGCGCACGAGCTCAGCGCCCCCGAAAAGGGCTGCCTG
ATCGTTGCCAAGAGCACCCAGTTCAGTATGGCCCAAACGTACTTCAACGA
GGCTGTAATTTTCTTGGCGAGCTACGACGAGGCTGGGTCGGCGGGGTTCA
TCCTTAACAGACCAACGTCCGTGCAGCTGGGAGACTTGGTCGAGGGCAAC
GCGCTGCGGCAGTTTTCGAAAACCCCCCTTTACCTAGGGGGCGACGTCGG
GGAAGGAAACGTTCAGATTTTGCACCCGTTCGGGCCGGATAAGCTCACCG
ACAGCATGGAAATCATCCCGGGCGTCTACATCGGCGGAGCGGTGGACGAG
GCTGACCGTATGGTGGCATCTGGGAGAGCCAAAGTAGACGACTTCAAGTT
CATGCTACACCTGTGCGGCTGGGCGCCGGGGCAGCTAGAGGACGAGATTG
AACGAGGCGTGTGGATGCCCGTAGCGACGTCGACCAACGTGATATTGAAG
CACTGCCTATCCCTGCCGGTTCCGATGTGGAGAGAGGTCATGACCCTTAT
GGGCCCCAAGTACGGCCTGCTCGCGAGAGACACGTACGACGACCTGTGA
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