mRNA_Ecto-sp13_S_contig19617.6322.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19617.6322.1
Unique NamemRNA_Ecto-sp13_S_contig19617.6322.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19617.6322.1 vs. uniprot
Match: D7G602_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G602_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 2.620e-39
Identity = 65/78 (83.33%), Postives = 69/78 (88.46%), Query Frame = 1 
Query:   10 QVYDNDFNDVGFGALKIMVDGQGTICGNTCVGDDCELTADYIDDASDTWDRACHEGDEVTSTSIYYDDDSKTYYSGYD 243
            +VYDNDFNDVGFGALKIMVDGQGTICGNTC GDDC+L  DY+DD  DTWD AC+E DEVTSTS YYDDD KTYYSGYD
Sbjct:    2 KVYDNDFNDVGFGALKIMVDGQGTICGNTCAGDDCQLIGDYLDDTIDTWDHACYEDDEVTSTSSYYDDDRKTYYSGYD 79
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BLAST of mRNA_Ecto-sp13_S_contig19617.6322.1 vs. uniprot
Match: D7FZD2_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZD2_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 4.980e-37
Identity = 65/79 (82.28%), Postives = 68/79 (86.08%), Query Frame = 1 
Query:    7 RQVYDNDFNDVGFGALKIMVDGQGTICGNTCVGDDCELTADYIDDASDTWDRACHEGDEVTSTSIYYDDDSKTYYSGYD 243
              VYDNDFNDVGFGALKIMVDGQGTICGNTC GDDC+L  DY+DD  DTWD AC+E DEVTSTS YYDDD KTYYSGYD
Sbjct:  269 NSVYDNDFNDVGFGALKIMVDGQGTICGNTCAGDDCQLIGDYLDDTIDTWDHACYEDDEVTSTSSYYDDDRKTYYSGYD 347
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19617.6322.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G602_ECTSI2.620e-3983.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FZD2_ECTSI4.980e-3782.28FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19617contigEcto-sp13_S_contig19617:783..1886 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size771
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_009560.1
Cds size771
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462992.2827203-CDS-Ecto-sp13_S_contig19617:782..9071681462992.2827203-CDS-Ecto-sp13_S_contig19617:782..907Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19617 783..907 +
1681462992.2934008-CDS-Ecto-sp13_S_contig19617:1210..13311681462992.2934008-CDS-Ecto-sp13_S_contig19617:1210..1331Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19617 1211..1331 +
1681462992.3032544-CDS-Ecto-sp13_S_contig19617:1361..18861681462992.3032544-CDS-Ecto-sp13_S_contig19617:1361..1886Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19617 1362..1886 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19617.6322.1prot_Ecto-sp13_S_contig19617.6322.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19617 783..1886 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19617.6322.1

>prot_Ecto-sp13_S_contig19617.6322.1 ID=prot_Ecto-sp13_S_contig19617.6322.1|Name=mRNA_Ecto-sp13_S_contig19617.6322.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=257bp
PARQVYDNDFNDVGFGALKIMVDGQGTICGNTCVGDDCELTADYIDDASD
TWDRACHEGDEVTSTSIYYDDDSKTYYSGYDDVTSTSSYYDDDSKTFYSA
YDDLTSIVSEDDDVTSSSSYYDNDTQTYSSGYDGVTSTVGGYDEVTSTSS
YYGDGSETYISGYDEVPSTLDEDDEVTTVTVSEDHEVTSASSYYEEVTST
VSVDDDTTISPSEDDDDSGDDDSSDGDSDCDSHDGESSDDDVLGQGYDFA
GVMASQ*
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mRNA from alignment at Ecto-sp13_S_contig19617:783..1886+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19617.6322.1 ID=mRNA_Ecto-sp13_S_contig19617.6322.1|Name=mRNA_Ecto-sp13_S_contig19617.6322.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1104bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19617:783..1886+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGGCCCGACAGGTGTACGACAACGATTTCAACGACGTCGGGTTCGGCGC
TCTCAAGATTATGGTGGACGGCCAGGGAACCATTTGCGGCAACACCTGCG
TGGGTGACGACTGCGAGTTGACCGCGTGAGGCACTCTCTTCCTTGACAAC
CACAATACTTGCGTGGTGGCTATTGATTATTGTTTTCGTTGCTGTTGTTG
TTGTCGTTGACAATTGTCGTATGTACAATATGCACGAACGTTGGGAGCTA
CGTCAACCCCCTACCGACCAATCGTATGCTGGACCCAAACCCTAACCTTG
CCCTCCGGCGCCCGCCCACCCACCCACGCCTCGGTTCTGTTTGATCGTCT
CCTCTCGGCCCCTGCAACGGCGACATTTCTCCCACCGCCGCCAACACCAC
ATTCAACGTGACGGCCACCGCTCTAAAGCGACTATATCGACGACGCCAGC
GACACGTGGGACCGCGCATGCCACGAGGGCGATGAGGTCACCAGCACCTC
CATCTACTACGATGATGACAGCAAAACGTATTATAGCGGTTACGATGACG
TCACCAGCACCGTGGGCGAGGACGATGAGGTCACCAGCACTTCCAGCTAC
TACGATGACGACAGCAAAACGTTTTACAGCGCTTACGATGACCTCACCAG
CATTGTTAGCGAGGACGATGACGTTACCAGCTCTTCCAGTTACTACGATA
ACGACACCCAAACTTACAGCAGCGGCTACGATGGCGTCACCAGCACCGTG
GGCGGCTACGATGAAGTCACGAGCACTTCCAGTTACTACGGTGATGGCAG
CGAAACGTATATTAGCGGTTACGATGAAGTCCCCAGCACCCTGGACGAGG
ACGATGAGGTTACGACTGTCACTGTGAGCGAGGACCATGAGGTCACCAGC
GCTTCCAGCTACTACGAGGAGGTCACCAGCACTGTTAGCGTAGACGATGA
CACTACCATCTCTCCTAGCGAGGACGACGATGACTCTGGCGACGACGATA
GCTCCGACGGTGATTCTGATTGCGACAGTCATGACGGCGAAAGCTCTGAC
GATGATGTGCTTGGTCAGGGATATGACTTCGCGGGGGTTATGGCTTCGCA
GTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19617:783..1886+

>mRNA_Ecto-sp13_S_contig19617.6322.1 ID=mRNA_Ecto-sp13_S_contig19617.6322.1|Name=mRNA_Ecto-sp13_S_contig19617.6322.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=771bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19617:783..1886+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGGCCCGACAGGTGTACGACAACGATTTCAACGACGTCGGGTTCGGCGC
TCTCAAGATTATGGTGGACGGCCAGGGAACCATTTGCGGCAACACCTGCG
TGGGTGACGACTGCGAGTTGACCGCCGACTATATCGACGACGCCAGCGAC
ACGTGGGACCGCGCATGCCACGAGGGCGATGAGGTCACCAGCACCTCCAT
CTACTACGATGATGACAGCAAAACGTATTATAGCGGTTACGATGACGTCA
CCAGCACTTCCAGCTACTACGATGACGACAGCAAAACGTTTTACAGCGCT
TACGATGACCTCACCAGCATTGTTAGCGAGGACGATGACGTTACCAGCTC
TTCCAGTTACTACGATAACGACACCCAAACTTACAGCAGCGGCTACGATG
GCGTCACCAGCACCGTGGGCGGCTACGATGAAGTCACGAGCACTTCCAGT
TACTACGGTGATGGCAGCGAAACGTATATTAGCGGTTACGATGAAGTCCC
CAGCACCCTGGACGAGGACGATGAGGTTACGACTGTCACTGTGAGCGAGG
ACCATGAGGTCACCAGCGCTTCCAGCTACTACGAGGAGGTCACCAGCACT
GTTAGCGTAGACGATGACACTACCATCTCTCCTAGCGAGGACGACGATGA
CTCTGGCGACGACGATAGCTCCGACGGTGATTCTGATTGCGACAGTCATG
ACGGCGAAAGCTCTGACGATGATGTGCTTGGTCAGGGATATGACTTCGCG
GGGGTTATGGCTTCGCAGTAG
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