mRNA_Ecto-sp13_S_contig19611.6321.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19611.6321.1
Unique NamemRNA_Ecto-sp13_S_contig19611.6321.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19611.6321.1 vs. uniprot
Match: D8LTP9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTP9_ECTSI)

HSP 1 Score: 301 bits (771), Expect = 1.680e-100
Identity = 174/247 (70.45%), Postives = 185/247 (74.90%), Query Frame = 1 
Query:    1 SHPRHQGIAPGSEAAVNRDDSCRHAKSFEVDNGTEQQHNRDGSILAHDESSAITVLASFVPGALVGAAICVRLFIFAPFVFLLLCAACVAVMVVFLCGAGAAVVTKSHRKVETNILPRCLQFDTDSSVLC----RKHSWTVFVFPCKVEVNVQEAAGKVQAEMQKVGICDHVMTRARSLWDQVDKRTAPGGQLSKFVHGAQGQDTMGLIREEPQPVFDDAADTPKSAPCSPLSSGNEKAVPAKASDA 729
            S PRHQG APGSEAA NRDDS RHAKSFEVDNGTEQQH+RDGSIL HDESSAIT+L SFV GA VG  ICVRLF+FAP VFLLLC ACVAVMVV      AAVVTKS  K  T I  R   F +D  +      R+ + T +    KV+  VQEAAGKVQ EMQKVGICDHVMTRA SLWDQVDKRTAP  Q SKFVHGAQGQDT+ L REEPQP FD+A D PKSAPCSP SS NEK  P K SDA
Sbjct:    3 SDPRHQGSAPGSEAAANRDDSHRHAKSFEVDNGTEQQHHRDGSILVHDESSAITMLGSFVAGASVGTMICVRLFMFAPIVFLLLCGACVAVMVVXXXXXXAAVVTKSDSKAGT-ISRRAGNFISDVLLALFRGVREFNRT-YQLTDKVKATVQEAAGKVQVEMQKVGICDHVMTRACSLWDQVDKRTAPAAQPSKFVHGAQGQDTISLFREEPQPGFDNAGDAPKSAPCSPSSSENEKTAPVKLSDA 247
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BLAST of mRNA_Ecto-sp13_S_contig19611.6321.1 vs. uniprot
Match: D8LTQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTQ0_ECTSI)

HSP 1 Score: 187 bits (475), Expect = 5.890e-56
Identity = 126/247 (51.01%), Postives = 153/247 (61.94%), Query Frame = 1 
Query:    1 SHPRHQGIAPGSEAAVNRDDSCRHAKSFEVDNGTEQQHNRDGSILAHDESSAITVLASFVPGALVGAAICVRLFIFAPFVFLLLCAACVAVMVVFLCGAGAAVVTKSHRKVETNILPRCLQFDTDSSV----LCRKHSWTVFVFPCKVEVNVQEAAGKVQAEMQKVGICDHVMTRARSLWDQVDKRTAPGGQLSKFVHGAQGQDTMGLIREEPQPVFDDAADTPKSAPCSPLSSGNEKAVPAKASDA 729
            S+PRHQ  APG EAA  R+DS            TEQ+H+ D S LAHDESSAI VL SFV GALVGA +CVR+F+FAP V            VV LCGAGAAV TKS  K    I     ++  D  +    + R+ ++  +    KV +  QEAAGKV+AE+Q++GICD V TRARSLW+QVDKRTAP GQ    +  AQGQDT+ L+ EEPQ  FDDAAD  +S  CS  SS +EK V  +  DA
Sbjct:    3 SYPRHQVSAPGHEAAAVRNDSYL---------DTEQEHHHDESTLAHDESSAIIVLGSFVAGALVGAILCVRVFMFAPTV------------VVLLCGAGAAVFTKSDSKAG-QISREVGKWTCDVFLALFRVVREFNYK-YQLTVKVRITAQEAAGKVKAEVQRLGICDGVKTRARSLWEQVDKRTAPAGQPP--IRAAQGQDTISLMMEEPQLGFDDAADALESKSCSSSSSEDEKTVRLRLFDA 224
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BLAST of mRNA_Ecto-sp13_S_contig19611.6321.1 vs. uniprot
Match: A0A6H5JZU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZU5_9PHAE)

HSP 1 Score: 172 bits (436), Expect = 1.590e-51
Identity = 93/113 (82.30%), Postives = 97/113 (85.84%), Query Frame = 1 
Query:    1 SHPRHQGIAPGSEAAVNRDDSCRHAKSFEVDNGTEQQHNRDGSILAHDESSAITVLASFVPGALVGAAICVRLFIFAPFVFLLLCAACVAVMVVFLCGAGAAVVTKSHRKVET 339
            S+PRHQG APGSEAA NRDDSCRHAKSFEVDNGTEQQHNRD SILAHDESSAIT+L SFV GA VGA ICVRLF+ AP VFLLLC ACVAV VV    AGAAVVTKSH KVE+
Sbjct:    3 SNPRHQGSAPGSEAAANRDDSCRHAKSFEVDNGTEQQHNRDRSILAHDESSAITMLGSFVAGASVGAMICVRLFVLAPIVFLLLCGACVAVTVVLXXXAGAAVVTKSHSKVES 115
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BLAST of mRNA_Ecto-sp13_S_contig19611.6321.1 vs. uniprot
Match: A0A6H5JUV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUV7_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 4.520e-32
Identity = 87/195 (44.62%), Postives = 105/195 (53.85%), Query Frame = 1 
Query:    1 SHPRHQGIAPGSEAAVNRDDSCRHAKSFEVDNGTEQQHNRDGSILAHDESSAITVLASFVPGALVGAAICVRLFIFAPFVFLLLCAACVAVMVVFLCGAGAAVVTKSHRKVETNILPRCLQFDTDSSVLCRKHSWTVFVFPC----------------KVEVNVQEAAGKVQAEMQKVGICDHVMTRARSLWDQV 537
            S PRH+G APG EA   R+D             TEQ+H+ D S LAHDESSAI +L SFV GAL+GA IC R+F+FAP V            VV LCGAGAAV T S  +V   ++           V      WT  VF                  KV++  QEAA KV+AE+Q++GICD V TRARSLW+QV
Sbjct:    3 SDPRHRGSAPGHEAVAVRNDPYL---------DTEQEHHHDESTLAHDESSAIIMLGSFVAGALMGAIICARVFMFAPMV------------VVLLCGAGAAVFTNSDSEVGKFVVRLRWAGQISRGV----GKWTSDVFLALFRVVREFNYKYQLADKVKITAQEAARKVKAEVQRIGICDGVKTRARSLWEQV 172
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BLAST of mRNA_Ecto-sp13_S_contig19611.6321.1 vs. uniprot
Match: D8LTP8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTP8_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 2.100e-23
Identity = 87/228 (38.16%), Postives = 111/228 (48.68%), Query Frame = 1 
Query:    1 SHPRHQGIAPGSEAAVNRDDSCRHAKSFEVDNGTEQQHNRDGSILAHDESSAITVLASFVPGALVGAAICVRLFIFAPFVFLLLCAACVAVMVVFLCGAGAAVVTKSHRKV----------ETNILPRCLQFDTDSSVLCRKHSWTVFVFPCKVEVNVQEAAGKVQAEMQKVGICDHVMTRARSLWDQVDKRTAPGGQLSKFVHGAQGQDTMGLIREEPQPVFDDAAD 654
            S P+    A      V  +DS   AK   + +  EQ H     ++AHDE+S I V  SF+ GALVG  IC   F                  VV L GAGAA +TKS  KV           ++IL    +   + +    KH  T      K +V  +EAAGKV  +M+K+GI D+V  RA SLWDQVDKRTAP GQ S  +  AQGQD +  + +  Q  FD A D
Sbjct:    5 SQPQGSSEAAPVAMEVPTNDSYDLAKPCAISDN-EQPHQE---VIAHDEASGIIVFGSFIAGALVGVVICAPAF------------------VVLLFGAGAAALTKSDSKVGKFSRKVGKVSSDILLAVFRLAREYN---HKHKLTD-----KAKVGAKEAAGKVTDKMRKLGIVDNVKARASSLWDQVDKRTAPAGQAS--IQAAQGQD-LSQVTDGTQIPFDGAVD 199
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BLAST of mRNA_Ecto-sp13_S_contig19611.6321.1 vs. uniprot
Match: A0A6H5JV13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV13_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 8.560e-14
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 1 
Query:  427 KVEVNVQEAAGKVQAEMQKVGICDHVMTRARSLWDQVDK 543
            KV+V VQEAA KVQAEMQKVGICDHVMTRARSLWDQVDK
Sbjct:   55 KVKVTVQEAARKVQAEMQKVGICDHVMTRARSLWDQVDK 93
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19611.6321.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LTP9_ECTSI1.680e-10070.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LTQ0_ECTSI5.890e-5651.01Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JZU5_9PHAE1.590e-5182.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUV7_9PHAE4.520e-3244.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTP8_ECTSI2.100e-2338.16Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JV13_9PHAE8.560e-1492.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19611contigEcto-sp13_S_contig19611:492..2898 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size729
Hectar predicted targeting categorysignal anchor
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-28_003270.1
Cds size729
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462992.21458-CDS-Ecto-sp13_S_contig19611:491..8281681462992.21458-CDS-Ecto-sp13_S_contig19611:491..828Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19611 492..828 +
1681462992.2376733-CDS-Ecto-sp13_S_contig19611:1921..21271681462992.2376733-CDS-Ecto-sp13_S_contig19611:1921..2127Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19611 1922..2127 +
1681462992.2502801-CDS-Ecto-sp13_S_contig19611:2712..28981681462992.2502801-CDS-Ecto-sp13_S_contig19611:2712..2898Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19611 2713..2898 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19611.6321.1prot_Ecto-sp13_S_contig19611.6321.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19611 492..2898 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19611.6321.1

>prot_Ecto-sp13_S_contig19611.6321.1 ID=prot_Ecto-sp13_S_contig19611.6321.1|Name=mRNA_Ecto-sp13_S_contig19611.6321.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=243bp
SHPRHQGIAPGSEAAVNRDDSCRHAKSFEVDNGTEQQHNRDGSILAHDES
SAITVLASFVPGALVGAAICVRLFIFAPFVFLLLCAACVAVMVVFLCGAG
AAVVTKSHRKVETNILPRCLQFDTDSSVLCRKHSWTVFVFPCKVEVNVQE
AAGKVQAEMQKVGICDHVMTRARSLWDQVDKRTAPGGQLSKFVHGAQGQD
TMGLIREEPQPVFDDAADTPKSAPCSPLSSGNEKAVPAKASDA
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mRNA from alignment at Ecto-sp13_S_contig19611:492..2898+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19611.6321.1 ID=mRNA_Ecto-sp13_S_contig19611.6321.1|Name=mRNA_Ecto-sp13_S_contig19611.6321.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2407bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19611:492..2898+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGTCACCCACGACACCAAGGCATCGCGCCCGGTTCTGAGGCAGCCGTGAA
TCGGGACGATTCATGCCGCCATGCAAAATCTTTCGAAGTGGACAACGGCA
CCGAGCAACAGCATAATCGTGATGGGTCTATTCTCGCACATGATGAGTCC
AGCGCTATCACCGTGCTCGCCTCCTTCGTGCCGGGTGCATTGGTGGGGGC
AGCGATCTGCGTTCGGTTGTTCATATTCGCGCCTTTTGTGTTCTTGCTTC
TCTGCGCAGCTTGTGTGGCGGTAATGGTCGTGTTTCTCTGCGGGGCCGGG
GCAGCGGTCGTCACCAAGTCACACAGAAAGGTGGAAAGTTTCTCGTGAGG
CTGCGACACGTTCAGTCACTGCCTGTCCACTGTACATTTGTCCAGGATGC
GTATATGAAATCGTTGGTAGCTGATATCTTGTGCACTCGGACTGACCTAC
ACTTTTGTCTTAAAGTAGTCGCACGTGAGCTCTAATGCGAGGGGGTTTGG
GACTTCCAGATTCAAGCAGACTGTGAAAGTCCAATTGTTGTATTCAGTGC
AGAGCACATCCGTCAAGGTGCTATATTTCAGGATGGCGCATGAGTCGTCG
CGGTGATTGGACTGACCTAATGGCAGCTTTTACGTGTAGACTCTCAAACG
AATCTATTCCCCGCTCATACCGTAGGATGTGGGTAGGCTCTGCAACAAAC
GGGGCGACGGTGGTCCTACCTTGCCAGAATATACACGACCGGCCAGTGTT
GGGGTCGTGGTGCCTTGTTTTAGGGGCCTCTATGCTGATCAGCGTCCAAC
GATGTGTTCGCCGATAGGGCGGGGGATGTTAAACACGTTGAGGGCTCCAG
AACCACCATCTGGATTCGATCTCGTCTTTCGACTTCATCAAAAAATCCNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACATCGT
ACAGCAGGCTTTCGACACGAACGATCGCTTCGAGCGTGCCCGACCTGACC
TTTTTTGAGCAGTCTCTTCATTTGTGGTTTGTTGGGCTCGGTCTCGCATT
GTATGCGGGTGGAGAAACACGTTTACTGAGCAAATATTTTACCACGGTGT
TTGCAATTTGACACCGATAGCAGCGTACTTTGCCGGAAACACTCCTGGAC
TGTTTTTGTATTCCCTTGCAAGGTGGAGGTTAACGTCCAAGAAGCGGCAG
GGAAGGTGCAAGCCGAGATGCAGAAGGTCGGCATCTGTGACCATGTGATG
ACCAGGGCACGCTCCCTGTGGGACCAAGTGGACAAGGTTAGGCAGACTCT
AGCCACGCTACTTTTGTTGTTTCTAGTGTCGAATCCAAAAGCATTGCGGC
AGAGTCGGAAGAGAGACAACTCGCGCTGCCGAACTCGCGCTGCCGTTCTT
CTCCAGCCACTGCGAGTGACCGTCAAGTCCTTGACACATGGAAACCTTGA
ACGGTCACAGCAAGACTCGGTAGGACCCATAGGTGAACCTTCGCATACCA
GCCGAGCTTGACCGCGGTGGGTCGAGATTCCTTGCTCGTACAACGGCACA
CGGGGAAAATTTCAGAGACGACGTTAACACGTTAAAACATGTCGCTGCAG
TTGGGAAATGTGGAGAGCGCAGAGCTCGCCTCCCCGCCCCTGCTTCTTCA
CTCCTCTGGCCCTCTTCTGTCCCTTCCGCTACCGTCTGACCTGCTCCTTC
CTTCCTGCTTGAAGACTTCGTGGTCAAGATCCTCCTGGCAACAGCGTACA
CAAGCGCAACATTTGGCATACTCCCCTTGAAATGTATTCCCAACCCCGTC
CTGTCCGCAGCGAAACAGCTCTTCTCTCATCTGCTCCGGGTGTATCGCAT
TTCCCCGCCTCACGCGCGCAGCGGACTGCGCCAGGTGGTCAACTTTCTAA
ATTTGTCCATGGTGCACAAGGGCAAGACACGATGGGTCTGATAAGGGAAG
AACCCCAACCTGTATTCGACGACGCGGCAGATACGCCCAAATCAGCGCCT
TGTTCCCCATTGTCTTCCGGAAATGAGAAGGCCGTCCCAGCAAAAGCGTC
CGACGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19611:492..2898+

>mRNA_Ecto-sp13_S_contig19611.6321.1 ID=mRNA_Ecto-sp13_S_contig19611.6321.1|Name=mRNA_Ecto-sp13_S_contig19611.6321.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=729bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19611:492..2898+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGTCACCCACGACACCAAGGCATCGCGCCCGGTTCTGAGGCAGCCGTGAA
TCGGGACGATTCATGCCGCCATGCAAAATCTTTCGAAGTGGACAACGGCA
CCGAGCAACAGCATAATCGTGATGGGTCTATTCTCGCACATGATGAGTCC
AGCGCTATCACCGTGCTCGCCTCCTTCGTGCCGGGTGCATTGGTGGGGGC
AGCGATCTGCGTTCGGTTGTTCATATTCGCGCCTTTTGTGTTCTTGCTTC
TCTGCGCAGCTTGTGTGGCGGTAATGGTCGTGTTTCTCTGCGGGGCCGGG
GCAGCGGTCGTCACCAAGTCACACAGAAAGGTGGAAACAAATATTTTACC
ACGGTGTTTGCAATTTGACACCGATAGCAGCGTACTTTGCCGGAAACACT
CCTGGACTGTTTTTGTATTCCCTTGCAAGGTGGAGGTTAACGTCCAAGAA
GCGGCAGGGAAGGTGCAAGCCGAGATGCAGAAGGTCGGCATCTGTGACCA
TGTGATGACCAGGGCACGCTCCCTGTGGGACCAAGTGGACAAGCGGACTG
CGCCAGGTGGTCAACTTTCTAAATTTGTCCATGGTGCACAAGGGCAAGAC
ACGATGGGTCTGATAAGGGAAGAACCCCAACCTGTATTCGACGACGCGGC
AGATACGCCCAAATCAGCGCCTTGTTCCCCATTGTCTTCCGGAAATGAGA
AGGCCGTCCCAGCAAAAGCGTCCGACGCG
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