mRNA_Ecto-sp13_S_contig1960.6317.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1960.6317.1
Unique NamemRNA_Ecto-sp13_S_contig1960.6317.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1960.6317.1 vs. uniprot
Match: D8LBK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK2_ECTSI)

HSP 1 Score: 213 bits (541), Expect = 2.060e-65
Identity = 100/140 (71.43%), Postives = 122/140 (87.14%), Query Frame = 1 
Query:    1 FAGMVGYCSKDEGRSRFKTAMKGISRSEVNVALSEYRAMQRAVVSDNRTEMGKKNFWGMLNRFRKEHLRGISVSPVLLTARYIQDGEGVPSQTWICPSSAFPMDAARAEAFWIAMTCPSLFTRKHAHLLFFSGGPGGRIS 420
            F+GMVG CSKDEGRS FKT  KG+SR+EVN+AL+EYR +QR+VVS+ RTE+GKKNFWG+L RF++EHLRGISVSPV L + YI DGEG+PS TWICP+SAF M+AARA+A++ A+  PSLFTRK A+LLFFSGG GGR+S
Sbjct:  244 FSGMVGDCSKDEGRSHFKTVTKGVSRTEVNIALTEYRTLQRSVVSELRTEIGKKNFWGVLRRFKQEHLRGISVSPVQLISWYINDGEGMPSHTWICPTSAFAMEAARADAYFTALMSPSLFTRKDAYLLFFSGGQGGRVS 383
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BLAST of mRNA_Ecto-sp13_S_contig1960.6317.1 vs. uniprot
Match: D7FPH8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPH8_ECTSI)

HSP 1 Score: 214 bits (545), Expect = 4.740e-63
Identity = 100/140 (71.43%), Postives = 122/140 (87.14%), Query Frame = 1 
Query:    1 FAGMVGYCSKDEGRSRFKTAMKGISRSEVNVALSEYRAMQRAVVSDNRTEMGKKNFWGMLNRFRKEHLRGISVSPVLLTARYIQDGEGVPSQTWICPSSAFPMDAARAEAFWIAMTCPSLFTRKHAHLLFFSGGPGGRIS 420
            F+GMVGYCSKDEGRS FKT  KG+SR+EVN+AL+EYR +QR VVS+ RT++GKKNFWG+L RF++EHLRGISVSPV L + YI DGEG+PS TWICP+SAF M+AARA+A++ A+  PSLFTRK A+LLFFSGG GGR+S
Sbjct:  419 FSGMVGYCSKDEGRSHFKTVTKGVSRTEVNIALAEYRTLQRFVVSELRTDIGKKNFWGVLRRFKQEHLRGISVSPVQLISWYINDGEGMPSHTWICPTSAFAMEAARADAYFTALMSPSLFTRKDAYLLFFSGGQGGRVS 558
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BLAST of mRNA_Ecto-sp13_S_contig1960.6317.1 vs. uniprot
Match: D7G8U7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8U7_ECTSI)

HSP 1 Score: 202 bits (515), Expect = 1.150e-61
Identity = 92/139 (66.19%), Postives = 117/139 (84.17%), Query Frame = 1 
Query:    1 FAGMVGYCSKDEGRSRFKTAMKGISRSEVNVALSEYRAMQRAVVSDNRTEMGKKNFWGMLNRFRKEHLRGISVSPVLLTARYIQDGEGVPSQTWICPSSAFPMDAARAEAFWIAMTCPSLFTRKHAHLLFFSGGPGGRI 417
            F+GM+GYCSKD+GR  FKT+ KG+S++E+NVAL+EYR +QR  V+++R E+GKKNFWG+L RF++EHLRGI VSP+ +    IQD + VPS +WICPSSAFPMDAARA+AF IA+ CPSLF RKHA+LLFF+GG G RI
Sbjct:   70 FSGMLGYCSKDQGRPHFKTSSKGVSQTEINVALAEYRKLQRVCVTEDRVELGKKNFWGLLRRFKQEHLRGIFVSPLQMVTWIIQDQQAVPSSSWICPSSAFPMDAARADAFGIALFCPSLFIRKHAYLLFFAGGQGDRI 208
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BLAST of mRNA_Ecto-sp13_S_contig1960.6317.1 vs. uniprot
Match: D7G6N0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6N0_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 4.980e-24
Identity = 50/72 (69.44%), Postives = 60/72 (83.33%), Query Frame = 1 
Query:  205 RGISVSPVLLTARYIQDGEGVPSQTWICPSSAFPMDAARAEAFWIAMTCPSLFTRKHAHLLFFSGGPGGRIS 420
            RGISVSPV L +  I DGEG+PS TWICP+SAF M+AARA+A++ A+  PSLFTRK A+LLFFSGG GGR+S
Sbjct:  219 RGISVSPVQLISWDINDGEGMPSHTWICPTSAFAMEAARADAYFTALISPSLFTRKDAYLLFFSGGQGGRVS 290
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1960.6317.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LBK2_ECTSI2.060e-6571.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FPH8_ECTSI4.740e-6371.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G8U7_ECTSI1.150e-6166.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G6N0_ECTSI4.980e-2469.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1960contigEcto-sp13_S_contig1960:14715..15134 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size420
Hectar predicted targeting categoryother localisation
Exons1
Cds size411
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462991.905572-CDS-Ecto-sp13_S_contig1960:14714..151251681462991.905572-CDS-Ecto-sp13_S_contig1960:14714..15125Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1960 14715..15125 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462991.9167962-UTR-Ecto-sp13_S_contig1960:15125..151341681462991.9167962-UTR-Ecto-sp13_S_contig1960:15125..15134Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1960 15126..15134 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1960.6317.1prot_Ecto-sp13_S_contig1960.6317.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1960 14715..15125 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1960.6317.1

>prot_Ecto-sp13_S_contig1960.6317.1 ID=prot_Ecto-sp13_S_contig1960.6317.1|Name=mRNA_Ecto-sp13_S_contig1960.6317.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=137bp
MVGYCSKDEGRSRFKTAMKGISRSEVNVALSEYRAMQRAVVSDNRTEMGK
KNFWGMLNRFRKEHLRGISVSPVLLTARYIQDGEGVPSQTWICPSSAFPM
DAARAEAFWIAMTCPSLFTRKHAHLLFFSGGPGGRIS
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mRNA from alignment at Ecto-sp13_S_contig1960:14715..15134-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1960.6317.1 ID=mRNA_Ecto-sp13_S_contig1960.6317.1|Name=mRNA_Ecto-sp13_S_contig1960.6317.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=420bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1960:14715..15134- (Ectocarpus species13 EcNAP12_S_4_19m)
TTTGCAGGCATGGTCGGGTATTGCTCAAAGGATGAAGGGCGCAGCCGCTT
CAAGACTGCGATGAAGGGCATCTCCAGGAGCGAGGTGAACGTCGCACTCT
CCGAGTATCGCGCGATGCAGCGCGCCGTCGTCTCCGACAACCGGACGGAG
ATGGGCAAGAAAAATTTCTGGGGGATGCTCAACCGCTTCCGGAAAGAGCA
CCTGCGAGGTATTTCCGTATCTCCGGTTCTTTTGACGGCACGGTACATCC
AGGACGGCGAGGGGGTTCCCAGCCAGACCTGGATCTGCCCCTCGAGCGCG
TTTCCCATGGACGCCGCCCGCGCAGAGGCGTTCTGGATCGCGATGACGTG
CCCGTCTCTCTTCACCCGCAAACACGCTCATCTCCTGTTCTTCTCCGGCG
GTCCGGGCGGTCGCATTAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1960:14715..15134-

>mRNA_Ecto-sp13_S_contig1960.6317.1 ID=mRNA_Ecto-sp13_S_contig1960.6317.1|Name=mRNA_Ecto-sp13_S_contig1960.6317.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=411bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1960:14715..15134- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCGGGTATTGCTCAAAGGATGAAGGGCGCAGCCGCTTCAAGACTGC
GATGAAGGGCATCTCCAGGAGCGAGGTGAACGTCGCACTCTCCGAGTATC
GCGCGATGCAGCGCGCCGTCGTCTCCGACAACCGGACGGAGATGGGCAAG
AAAAATTTCTGGGGGATGCTCAACCGCTTCCGGAAAGAGCACCTGCGAGG
TATTTCCGTATCTCCGGTTCTTTTGACGGCACGGTACATCCAGGACGGCG
AGGGGGTTCCCAGCCAGACCTGGATCTGCCCCTCGAGCGCGTTTCCCATG
GACGCCGCCCGCGCAGAGGCGTTCTGGATCGCGATGACGTGCCCGTCTCT
CTTCACCCGCAAACACGCTCATCTCCTGTTCTTCTCCGGCGGTCCGGGCG
GTCGCATTAGC
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