mRNA_Ecto-sp13_S_contig19595.6316.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19595.6316.1
Unique NamemRNA_Ecto-sp13_S_contig19595.6316.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig19595.6316.1 vs. uniprot
Match: D8LLA9_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLA9_ECTSI)

HSP 1 Score: 234 bits (598), Expect = 1.400e-73
Identity = 120/134 (89.55%), Postives = 126/134 (94.03%), Query Frame = 1
Query:    1 MVLTASPHSSKPTVKVDDAMEEILLCPLLLEAFEEFCRKALCSESIMFLKAARAYNDSVYASTANEDTNFALFMDIFDEYIKDGSPFEINIESKTKSFIMRRTDKEAFKQLPLDDVARGLDAAAKEVGKMLKEN 402
            MVL AS H SK TVK+DDAMEEIL CP+LLEAFEEFCRKALCSESI+FLKAA A+NDSVYASTANEDTNFALFMDIFD+YIKDGSPFEINIESKTKSFIM+RTDKEAFKQL LDD ARGLDAAAKEVGKMLKEN
Sbjct:  279 MVLAASTHCSKSTVKLDDAMEEILRCPVLLEAFEEFCRKALCSESILFLKAAWAFNDSVYASTANEDTNFALFMDIFDKYIKDGSPFEINIESKTKSFIMKRTDKEAFKQLRLDDAARGLDAAAKEVGKMLKEN 412          
BLAST of mRNA_Ecto-sp13_S_contig19595.6316.1 vs. uniprot
Match: A0A6H5K976_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K976_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 6.520e-40
Identity = 80/129 (62.02%), Postives = 99/129 (76.74%), Query Frame = 1
Query:   19 PHSSKPT-VKVDDAMEEILLCPLLLEAFEEFCRKALCSESIMFLKAARAYNDSVYASTANEDTNFALFMDIFDEYIKDGSPFEINIESKTKSFIMRRTDKEAFKQLPLDDVARGLDAAAKEVGKMLKEN 402
            P SSK T VK+DD +EEIL  P LLEAF EFCRKALCSES+MFL A + +++S+ AS A+ DT FA F +I D+YI+DGS FE+NIESKTK+ I+ RT   +FK+LPLDD    LD A KE+GKML+EN
Sbjct:  339 PSSSKFTSVKLDDKLEEILRFPPLLEAFGEFCRKALCSESLMFLTAGKDFHESLDASDADYDTIFARFNEIVDQYIRDGSSFEVNIESKTKAQILSRTSMSSFKELPLDDAVCILDLAVKEIGKMLQEN 467          
BLAST of mRNA_Ecto-sp13_S_contig19595.6316.1 vs. uniprot
Match: A0A6H5K6R2_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6R2_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 1.630e-31
Identity = 58/100 (58.00%), Postives = 77/100 (77.00%), Query Frame = 1
Query:   37 TVKVDDAMEEILLCPLLLEAFEEFCRKALCSESIMFLKAARAYNDSVYASTANEDTNFALFMDIFDEYIKDGSPFEINIESKTKSFIMRRTDKEAFKQLP 336
            +VK+DDA+E+IL    LLEAFEEFC+KALC ES+MFLKA   +  SV+ASTA++D NF L  DI  +Y++ GSPFE+NI+SKTKS I+ +  +E F +LP
Sbjct:   69 SVKLDDALEQILCFTPLLEAFEEFCQKALCIESLMFLKAVMGFRGSVHASTASDDGNFTLLTDIVQKYVQSGSPFEVNIDSKTKSNILVKITRETFMRLP 168          
BLAST of mRNA_Ecto-sp13_S_contig19595.6316.1 vs. uniprot
Match: D7FN97_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN97_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 1.390e-24
Identity = 58/133 (43.61%), Postives = 83/133 (62.41%), Query Frame = 1
Query:   58 MEEILLCPLLLEAFEEFCRKALCSESIMFLKAARAYNDSVYA----STANEDT--------------NFALFMDIFDEYIKDGSPFEINIESKTKSFIMRRTDKEAFKQLPLDDVARGLDAAAKEVGKMLKEN 402
            ++ I+  P L +AFEE+CR ALCSES+MFL  A  +N +++A    STA +D               NF  F  I D+YI++GSPFE+NIESK ++ I+R  D+ +F++L LDD    L+ A K+V  ML+EN
Sbjct:   42 LDLIIQFPPLFQAFEEYCRNALCSESLMFLVDADEFNSALHAVSKFSTAGKDPESAAVAVNECEHNPNFEQFAAIVDKYIREGSPFEVNIESKIRNEILREVDRASFERLNLDDKEHLLEKATKQVSNMLREN 174          
BLAST of mRNA_Ecto-sp13_S_contig19595.6316.1 vs. uniprot
Match: D7FYZ5_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYZ5_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 9.420e-20
Identity = 47/115 (40.87%), Postives = 73/115 (63.48%), Query Frame = 1
Query:   58 MEEILLCPLLLEAFEEFCRKALCSESIMFLKAARAYNDSVYASTANEDTNFALFMDIFDEYIKDGSPFEINIESKTKSFIMRRTDKEAFKQLPLDDVARGLDAAAKEVGKMLKEN 402
            +E I+  P LLEAF+ FC+KALC ESI+ L+   A+ DS+YA  A++D  F  F+ I +++IK GS +E+NI+ + ++ +MR  D+  FK+L  D  A     A  +  +ML +N
Sbjct:  388 LETIINTPPLLEAFDSFCQKALCGESILLLREVAAFRDSIYAVEADDDALFKEFVAIVNKFIKSGSSYEVNIDCRARTGVMRDVDEARFKELDTDGRADIFTLAETQTSQMLADN 502          
BLAST of mRNA_Ecto-sp13_S_contig19595.6316.1 vs. uniprot
Match: A0A6H5JLE7_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLE7_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 3.470e-13
Identity = 43/109 (39.45%), Postives = 62/109 (56.88%), Query Frame = 1
Query:  130 ESIMFLKAARAYNDSVYAST------------------ANEDTNFALFMDIFDEYIKDGSPFEINIESKTKSFIMRRTDKEAFKQLPLDDVARGLDAAAKEVGKMLKEN 402
            ES+MFL  A  +N S++A +                    E+ NF  F  I D+YI++GSPFE+NIESK +  I+R  D+ +F++L LD+    LD A K+V  ML+EN
Sbjct:  163 ESLMFLVDADEFNCSLHAVSKFTSAGADPSPAAMGVVECEENLNFEQFAAIVDKYIREGSPFEVNIESKIRDEILREVDRASFRRLTLDEKVHLLDKATKQVSNMLREN 271          
BLAST of mRNA_Ecto-sp13_S_contig19595.6316.1 vs. uniprot
Match: D7G2T8_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T8_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 4.210e-9
Identity = 39/114 (34.21%), Postives = 60/114 (52.63%), Query Frame = 1
Query:   79 PLLLEAFEEFCRKALCSESIMFLKAARAYNDSVYASTANE----DTNFALFMDIFDEYIKDGSPFEINIESKTKSFIMRRTDK--EAFKQLPLDDVARGLDAAAKEVGKMLKEN 402
            PLL  AFE++ ++ALC ES++FL     Y +  YA+  N      T F  F  I D +IK G+P E+NI  K +  I+    K  E+F+++  ++       +  EV  ML+ N
Sbjct:  470 PLLAAAFEDYSKRALCHESVLFLSEVSRYQNDDYATPTNAAGTCPTQFGTFCYITDTFIKAGAPEEVNISDKDRKLILELYQKGEESFEEVNEEERRMVFKRSYLEVKSMLEAN 583          
BLAST of mRNA_Ecto-sp13_S_contig19595.6316.1 vs. uniprot
Match: D7G2T5_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T5_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 9.320e-9
Identity = 43/122 (35.25%), Postives = 59/122 (48.36%), Query Frame = 1
Query:   61 EEILLCPLLLEAFEEFCRKALCSESIMFLKAARAYNDSVYASTANED------TNFALFMDIFDEYIKDGSPFEINIESKTKSFIMRRTDK--EAFKQLPLDDVARGLDAAAKEVGKMLKEN 402
            E +   PLL  AFE++ ++ALC ES++FL     Y    YA++A         T F  F  I D +IK GSP E+NI    K  I+    K  E+F  +  +D       A  EV  ML+ N
Sbjct:  123 ERLARTPLLAAAFEDYSKRALCHESVLFLSEVSRYQSDDYATSARPSSESSCPTQFGTFCYITDTFIKGGSPEEVNISDADKKAILDVYHKGEESFGGVNEEDRRMIFSPAYLEVKSMLEAN 244          
BLAST of mRNA_Ecto-sp13_S_contig19595.6316.1 vs. uniprot
Match: D7FTV9_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTV9_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 8.160e-7
Identity = 30/77 (38.96%), Postives = 43/77 (55.84%), Query Frame = 1
Query:   61 EEILLCPLLLEAFEEFCRKALCSESIMFLKAARAYNDSVY------ASTANEDTNFALFMDIFDEYIKDGSPFEINI 273
            E I   PLL  AFE++ ++ALC ES++FL     Y ++ Y      +S ++    F  F  I D +IK GSP E+NI
Sbjct:    7 ERIASTPLLAAAFEDYSKRALCHESVLFLSEVSRYQNNNYPMPTRASSASSPRIQFGSFCYITDTFIKAGSPEEVNI 83          
BLAST of mRNA_Ecto-sp13_S_contig19595.6316.1 vs. uniprot
Match: A0A6H5LEP9_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEP9_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 2.010e-6
Identity = 29/70 (41.43%), Postives = 40/70 (57.14%), Query Frame = 1
Query:   79 PLLLEAFEEFCRKALCSESIMFLKAARAYNDSVYASTANE-----DTNFALFMDIFDEYIKDGSPFEINI 273
            PLL  AFE++ ++ALC ES++FL     Y +  YA+  N       T F  F  I D +IK G+P E+NI
Sbjct:  399 PLLAAAFEDYSKRALCHESVLFLSEVSRYQNDDYATPTNAAAGTCPTQFGTFCFITDTFIKAGAPEEVNI 468          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19595.6316.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D8LLA9_ECTSI1.400e-7389.55RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K976_9PHAE6.520e-4062.02RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K6R2_9PHAE1.630e-3158.00RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FN97_ECTSI1.390e-2443.61RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FYZ5_ECTSI9.420e-2040.87RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JLE7_9PHAE3.470e-1339.45RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G2T8_ECTSI4.210e-934.21RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G2T5_ECTSI9.320e-935.25RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FTV9_ECTSI8.160e-738.96RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5LEP9_9PHAE2.010e-641.43RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19595contigEcto-sp13_S_contig19595:200..1359 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score235.7
Seed ortholog evalue1.2e-59
Seed eggNOG ortholog2880.D8LLA9
Model size402
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.Regulator of G protein signaling domain
EggNOG OGs2D0MX@1,2SERP@2759
Cds size402
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462991.8547812-CDS-Ecto-sp13_S_contig19595:199..3311681462991.8547812-CDS-Ecto-sp13_S_contig19595:199..331Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19595 200..331 +
1681462991.8667371-CDS-Ecto-sp13_S_contig19595:836..10431681462991.8667371-CDS-Ecto-sp13_S_contig19595:836..1043Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19595 837..1043 +
1681462991.8766835-CDS-Ecto-sp13_S_contig19595:1296..13591681462991.8766835-CDS-Ecto-sp13_S_contig19595:1296..1359Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19595 1297..1359 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19595.6316.1prot_Ecto-sp13_S_contig19595.6316.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19595 200..1359 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19595.6316.1

>prot_Ecto-sp13_S_contig19595.6316.1 ID=prot_Ecto-sp13_S_contig19595.6316.1|Name=mRNA_Ecto-sp13_S_contig19595.6316.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=134bp
MVLTASPHSSKPTVKVDDAMEEILLCPLLLEAFEEFCRKALCSESIMFLK
AARAYNDSVYASTANEDTNFALFMDIFDEYIKDGSPFEINIESKTKSFIM
RRTDKEAFKQLPLDDVARGLDAAAKEVGKMLKEN
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mRNA from alignment at Ecto-sp13_S_contig19595:200..1359+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19595.6316.1 ID=mRNA_Ecto-sp13_S_contig19595.6316.1|Name=mRNA_Ecto-sp13_S_contig19595.6316.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1160bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19595:200..1359+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTTTTGACAGCCTCGCCGCATTCTAGCAAACCCACTGTCAAGGTGGA TGATGCGATGGAGGAGATCTTGCTCTGTCCCCTGCTCCTGGAGGCATTCG AAGAGTTTTGTCGTAAGGCGCTCTGCAGCGAGGTGAGATTCAACCAGGAC TGTCTCAAACCTAATGCGCATATGTAGGTACGCAAACGAGTGAGAGCCAA TAATCCGCCGCTCTTCCCGTTGAAAATGTGTGTCTACACGACATTCTGCA CGAGATGTAAGCCGACCTTGAGACGCGCCAGTAAACAGATAAGCGACGGA TTAGACGACCTTTTAGAAGGGCAGCCCCTGCTCGAGATGTTTCTATTTTC TGGTACGTGATGCTTGCAGAAACTCCCTCTTCGTGGGTCGACTCGACAAC CCCAAGGGCTGTTTCCAATCCACCAGAGACTGCAAGAGCGGAAGGCAGGC AGGCAGGCGGTGAAGGAGAGGGCGTTGTTTGTAGTTGTGGTGGTAGAGAA CGAGGAGAAACCGTTGTTGTACTGGACACTCGGTCGTTGTCCTGGCTCCT CCTACCGTTGGGTGCTGTGCCAATGCCCCCCCCCCCCCCCCCATCACCGA TTCCCCTCGGACGGTATCCATTTCAATACGCATGCAGTCAATTATGTTCT TGAAAGCCGCTCGGGCATACAACGACTCTGTCTACGCATCGACTGCCAAT GAGGACACCAACTTCGCGCTGTTCATGGACATTTTCGACGAGTACATCAA GGACGGGTCCCCCTTCGAGATCAACATCGAAAGCAAGACCAAGTCCTTTA TCATGAGAAGAACCGACAAGGAGGCCTTCAAGCAGCTTCCTTTGGTACGT ACACCATGCCCTAGATCGGGAATCCACCCTTGGCCGACCTGCCGCACGCC ATGTGTTGAGCATACAACGCCCTCCGTTTTCCTCAACCATAGGGTATTTT TCCTAGGCTCCGTTTCTTCGCAGGCGTGCACGTCGTTACCGTTGACTGCG CTTCACATCGAGATGCCGGGCTGCAAGGATTTACCCTTTGCGCACACCCC CTCACCCGCCCGTCGGGCACTGTTTCTGCGCGAACAAACTCTTTCAGGAC GATGTAGCTCGAGGTCTGGATGCCGCTGCCAAAGAAGTCGGGAAGATGCT CAAAGAAAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19595:200..1359+

>mRNA_Ecto-sp13_S_contig19595.6316.1 ID=mRNA_Ecto-sp13_S_contig19595.6316.1|Name=mRNA_Ecto-sp13_S_contig19595.6316.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=402bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19595:200..1359+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTTTTGACAGCCTCGCCGCATTCTAGCAAACCCACTGTCAAGGTGGA
TGATGCGATGGAGGAGATCTTGCTCTGTCCCCTGCTCCTGGAGGCATTCG
AAGAGTTTTGTCGTAAGGCGCTCTGCAGCGAGTCAATTATGTTCTTGAAA
GCCGCTCGGGCATACAACGACTCTGTCTACGCATCGACTGCCAATGAGGA
CACCAACTTCGCGCTGTTCATGGACATTTTCGACGAGTACATCAAGGACG
GGTCCCCCTTCGAGATCAACATCGAAAGCAAGACCAAGTCCTTTATCATG
AGAAGAACCGACAAGGAGGCCTTCAAGCAGCTTCCTTTGGACGATGTAGC
TCGAGGTCTGGATGCCGCTGCCAAAGAAGTCGGGAAGATGCTCAAAGAAA
AC
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