mRNA_Ecto-sp13_S_contig19566.6304.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19566.6304.1
Unique NamemRNA_Ecto-sp13_S_contig19566.6304.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19566.6304.1 vs. uniprot
Match: A0A6H5JZN3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZN3_9PHAE)

HSP 1 Score: 314 bits (805), Expect = 2.680e-98
Identity = 242/315 (76.83%), Postives = 244/315 (77.46%), Query Frame = 1 
Query:   22 QAQQANIKAGVAVAPRAPAAASAAGTTSKSKSPGLRRRGLLDGADDVPWKSFPSLVSSASESSARXXXXXXXXXXXXPALSVVSRSATSRFRARRELERLAASGNEDAVEALRALDSPTVSSPSVGXXXXXXXXXXXXXXX--LTPFTVLPVLLALVGAGYCAVNDLIPRELSWAGXXXXXXXXXXXXXXXXXXXXXLSPLLRTLSRVAAFVPVAXXXXXXXXXXXXXXXXXXXXX---------SPAEAALIEEEQPSEGQREAGWRLWGWWRRGGSTGAAVQTGEEGELVGNSGVLPEDEVVTARGVGEGLRH 933
            +AQQANI AG AVAPR PA ASAAGTT+KSKSPGLRRRGLLDGADDVPWKSFPSLVS ASESSAR            PALSVVSRSATSRFRARRELERLAASGNEDAVEALR LDSPT SSP V        XXXXXXXX  LTP TVLPVLLALVGAGYCAVNDLIPRELSWAGXXXXXXXXXXXXXXXXXXXX LSPLLRTLSRV AFVPVA XXXXXXXXXXXXXXXXXXXX         SPAEAA IEE             LWGWWRRG S GAAVQTGEE  L GNSG LPEDEV        GLRH
Sbjct:  105 EAQQANIMAGTAVAPRTPATASAAGTTNKSKSPGLRRRGLLDGADDVPWKSFPSLVSGASESSARTAKGGAAAAGEAPALSVVSRSATSRFRARRELERLAASGNEDAVEALRDLDSPTASSPPVSGEGGGAEXXXXXXXXSGLTPLTVLPVLLALVGAGYCAVNDLIPRELSWAGXXXXXXXXXXXXXXXXXXXXSLSPLLRTLSRVGAFVPVASXXXXXXXXXXXXXXXXXXXXXXXGVGGALSPAEAAPIEEXXXXXXXXXXXXXLWGWWRRGRSAGAAVQTGEEFGLGGNSGALPEDEVXXXXXXXXGLRH 419
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BLAST of mRNA_Ecto-sp13_S_contig19566.6304.1 vs. uniprot
Match: D8LBY1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBY1_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 2.690e-11
Identity = 39/46 (84.78%), Postives = 40/46 (86.96%), Query Frame = 3 
Query:   24 GPTSQHQGRCSSSPSSTRGSV--RRRHHKQVQVPRAAPPGVARRGR 155
            GPTSQ QGRCSSSPSSTRGS   RRRH KQVQVPRA+P GVARRGR
Sbjct:   19 GPTSQRQGRCSSSPSSTRGSGSGRRRHDKQVQVPRASPSGVARRGR 64
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19566.6304.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JZN3_9PHAE2.680e-9876.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBY1_ECTSI2.690e-1184.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19566contigEcto-sp13_S_contig19566:429..2821 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1721
Hectar predicted targeting categoryother localisation
Exons2
Cds size1020
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462991.0379512-CDS-Ecto-sp13_S_contig19566:428..7451681462991.0379512-CDS-Ecto-sp13_S_contig19566:428..745Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19566 429..745 +
1681462991.0483978-CDS-Ecto-sp13_S_contig19566:1417..21201681462991.0483978-CDS-Ecto-sp13_S_contig19566:1417..2120Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19566 1418..2120 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462991.0582764-UTR-Ecto-sp13_S_contig19566:2120..28211681462991.0582764-UTR-Ecto-sp13_S_contig19566:2120..2821Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19566 2121..2821 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19566.6304.1prot_Ecto-sp13_S_contig19566.6304.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19566 429..2120 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19566.6304.1

>prot_Ecto-sp13_S_contig19566.6304.1 ID=prot_Ecto-sp13_S_contig19566.6304.1|Name=mRNA_Ecto-sp13_S_contig19566.6304.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=340bp
MPPFLTLQAQQANIKAGVAVAPRAPAAASAAGTTSKSKSPGLRRRGLLDG
ADDVPWKSFPSLVSSASESSARTAKAGAAAAGEAPALSVVSRSATSRFRA
RRELERLAASGNEDAVEALRALDSPTVSSPSVGGEGGGAEGGGGGGGGLT
PFTVLPVLLALVGAGYCAVNDLIPRELSWAGGGGSGDSAAAGNTEDEDES
SSLSPLLRTLSRVAAFVPVASSTTTPPTSDDDDDDDVGGAPSPAEAALIE
EEQPSEGQREAGWRLWGWWRRGGSTGAAVQTGEEGELVGNSGVLPEDEVV
TARGVGEGLRHDEQQQMHPRWLRWRSSSLVPPDSPERSV*
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mRNA from alignment at Ecto-sp13_S_contig19566:429..2821+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19566.6304.1 ID=mRNA_Ecto-sp13_S_contig19566.6304.1|Name=mRNA_Ecto-sp13_S_contig19566.6304.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2393bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19566:429..2821+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCCCTTTCTTAACCTTGCAGGCCCAACAAGCCAACATCAAGGCAGG
TGTAGCAGTAGCCCCTCGAGCACCCGCGGCAGCGTCCGCCGCCGGCACCA
CAAGCAAGTCCAAGTCCCCCGGGCTGCGCCGCCGGGGGTTGCTAGACGGG
GCCGATGACGTGCCGTGGAAGTCTTTTCCATCGTTGGTGTCTAGCGCGAG
TGAGTCGTCGGCCAGGACAGCGAAGGCGGGCGCAGCCGCAGCGGGCGAGG
CTCCCGCTCTCTCCGTCGTGTCGCGGTCGGCTACGAGCAGGTTCAGAGCC
AGGAGGGAGCTCGAGAGGTGAGAGCCCTTGGGAGGGGGGAGGGGGAATCA
GGCCAGCTTTTCCTTTGCGGGTGTAGGCGGAGGGACGGGGAACACCTCAT
TTTTCGTCCGTGAAACGCAATCAGGCGAATGCGAAATACAGGTGACCTGC
TGGACCCTTTGAGCCTTGCAGCTTTTTCCGTGTACCTTCAAATGTAGTCT
CCGGTACCGGTAGGTTGTGACACCTACCTATGTTTTTCCTGAGGGCTATG
GTGAAGGTACACAGCAGTTCGCCGATTGTAATGAAGCGTGCTCTTCGTTA
CATGAGCTCAATTTAACTTGGAACGCCATCAAAAACATCCCGCCCGACAG
TTACGGTTACCTAGCACGGCGGTAGAGAGTATCTTGTTTTTTTGTCTGAT
GCAACTCAAATAGCCTGCCGGGGTTCACCAGAGGCAACACGTAATCTCAC
CCCTGAAGCGGTTGGTGTGCCATAGTTAGCTAGTACTAAGAAAAAATGCT
ACCCCCTGCGATCTCTCGGACCCCCGATGCAATAATATCGTCTCGTGTTC
GAATCTTTTGTCGCACGGTGGCGCCAACTCCTGGCACTGCTGTCTGCGTT
CAAGCCGCATTATTCCTGTTTTCTTCAGATTTTCATGGGGTAGCGCCCTC
TCCTCCCTCCCCCCCCTCACCGCCCGTGCGTCCTTTCAGGCTGGCCGCGA
GCGGGAATGAGGATGCAGTAGAGGCCTTGCGCGCCTTAGACTCGCCGACA
GTGTCTTCCCCGTCTGTTGGTGGCGAGGGCGGCGGCGCCGAGGGCGGAGG
CGGAGGCGGAGGCGGCCTTACGCCATTTACCGTCCTCCCCGTGCTGCTCG
CCCTCGTCGGCGCTGGCTACTGCGCCGTGAACGACTTGATACCTCGGGAG
CTGTCGTGGGCAGGCGGGGGTGGCTCAGGGGACTCAGCCGCCGCGGGCAA
CACGGAAGACGAAGACGAATCGTCCTCCTTGTCGCCCCTCTTGAGGACGC
TCTCTCGCGTAGCGGCGTTCGTCCCCGTGGCTTCCTCTACCACCACCCCC
CCCACAAGCGACGACGATGACGATGATGATGTCGGCGGGGCCCCCTCGCC
GGCAGAAGCCGCCCTAATCGAGGAGGAGCAGCCGAGCGAAGGTCAGAGAG
AAGCGGGCTGGCGTCTTTGGGGGTGGTGGAGGCGCGGGGGATCTACCGGC
GCCGCCGTTCAAACGGGAGAGGAGGGCGAACTTGTAGGCAATAGTGGGGT
GTTGCCTGAAGACGAGGTTGTGACTGCCAGGGGGGTGGGAGAGGGGCTAC
GGCATGACGAGCAGCAGCAGATGCATCCGCGCTGGTTGAGATGGCGCTCG
TCGTCGCTGGTACCGCCTGATTCTCCTGAACGGAGCGTGTAGCAACGGAT
GGTGCTTCTTGTTTGGGAACTATCGCCTGTGAGCGTTTTCTTTTTCATAC
GGCGTGGAACTACTACTACTCGCAAATAGGCCGAGTGTTGTATATGCATA
CTGTGTAGAACAAGGCCTATGGGTTAGGGATTTAAGCGTGTTGCCGCTTG
GACTGAACGCTAGGTCAGGATCACGCTACATGTATTTTCCTTCGCCACGG
TGGCGAACGTTTCTTGTGTTGAAAGGTTTTTAGTTTCTCAATCGTAGCTC
GCCTGCTCTAGTAGCTTTGTTGTGAGGATAGAAGGCTTTCGAGCGGACAT
GCCACTCCGAGGTTGTAGCTCGCAAATGGGGCGTATGGTTCGGGACCTTT
TCATCGCGTAGCCATGACCCCATCCCCTGAAACACTAGGCTAAGGGCAGA
TAGATACCTGGTAGGACGAAATAGAAGTAATTGTAGTAGGAGGTGAGACA
TGAATGCGTTGGGTTTGCATCCCAAAACGAAGCTCTTGCCATTCATTTCT
CGGAACCCACTAGAAAAAGGTTATCAGAGAGGGTGCATTTAGGGGGATTT
CGGTTGTATCTCGAGACAGAAAGAGAGACTGGGCGCTGCTTTCATGCAAC
GATTTTATGCAAAACGTAGAAATCCAACTGGTTGTGTCGCTCCGTCAACG
GCCTATGGTTGGCTTCCACCGAGCACCTCGCGACGGCGTCACG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19566:429..2821+

>mRNA_Ecto-sp13_S_contig19566.6304.1 ID=mRNA_Ecto-sp13_S_contig19566.6304.1|Name=mRNA_Ecto-sp13_S_contig19566.6304.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1020bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19566:429..2821+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCCCTTTCTTAACCTTGCAGGCCCAACAAGCCAACATCAAGGCAGG
TGTAGCAGTAGCCCCTCGAGCACCCGCGGCAGCGTCCGCCGCCGGCACCA
CAAGCAAGTCCAAGTCCCCCGGGCTGCGCCGCCGGGGGTTGCTAGACGGG
GCCGATGACGTGCCGTGGAAGTCTTTTCCATCGTTGGTGTCTAGCGCGAG
TGAGTCGTCGGCCAGGACAGCGAAGGCGGGCGCAGCCGCAGCGGGCGAGG
CTCCCGCTCTCTCCGTCGTGTCGCGGTCGGCTACGAGCAGGTTCAGAGCC
AGGAGGGAGCTCGAGAGGCTGGCCGCGAGCGGGAATGAGGATGCAGTAGA
GGCCTTGCGCGCCTTAGACTCGCCGACAGTGTCTTCCCCGTCTGTTGGTG
GCGAGGGCGGCGGCGCCGAGGGCGGAGGCGGAGGCGGAGGCGGCCTTACG
CCATTTACCGTCCTCCCCGTGCTGCTCGCCCTCGTCGGCGCTGGCTACTG
CGCCGTGAACGACTTGATACCTCGGGAGCTGTCGTGGGCAGGCGGGGGTG
GCTCAGGGGACTCAGCCGCCGCGGGCAACACGGAAGACGAAGACGAATCG
TCCTCCTTGTCGCCCCTCTTGAGGACGCTCTCTCGCGTAGCGGCGTTCGT
CCCCGTGGCTTCCTCTACCACCACCCCCCCCACAAGCGACGACGATGACG
ATGATGATGTCGGCGGGGCCCCCTCGCCGGCAGAAGCCGCCCTAATCGAG
GAGGAGCAGCCGAGCGAAGGTCAGAGAGAAGCGGGCTGGCGTCTTTGGGG
GTGGTGGAGGCGCGGGGGATCTACCGGCGCCGCCGTTCAAACGGGAGAGG
AGGGCGAACTTGTAGGCAATAGTGGGGTGTTGCCTGAAGACGAGGTTGTG
ACTGCCAGGGGGGTGGGAGAGGGGCTACGGCATGACGAGCAGCAGCAGAT
GCATCCGCGCTGGTTGAGATGGCGCTCGTCGTCGCTGGTACCGCCTGATT
CTCCTGAACGGAGCGTGTAG
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