mRNA_Ecto-sp13_S_contig19563.6303.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19563.6303.1
Unique NamemRNA_Ecto-sp13_S_contig19563.6303.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19563.6303.1 vs. uniprot
Match: D7FIE3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIE3_ECTSI)

HSP 1 Score: 319 bits (818), Expect = 8.720e-105
Identity = 151/160 (94.38%), Postives = 153/160 (95.62%), Query Frame = 3 
Query:    3 RTGGGQDTRMLFGLHFQPPEFSVWLHGTVQAVMLGGFAALIPKVTAERIREKEEGMDRDEDYAAGVWDDDEDVDEYGYAGGYVCPTCDNTNQVKCSECEGKGFFVSASAMPKKCTYCNGLGTFDCEDCEERRETLRRERGARRPPRELPPARGDDFPFGR 482
            RTGGG  TRMLFGLHFQPPEFSVWLHGTVQAVMLGGFAALIPKVTAERIREKEEGM RDEDYAAG+WDDDED DEYG AGGYVCPTCDNTNQV+CSEC GKGFFVSASAMPKKCTYCNGLGTFDCEDCEERRE LRRERGARRPPRELPPARGDDFPFGR
Sbjct:   93 RTGGGHGTRMLFGLHFQPPEFSVWLHGTVQAVMLGGFAALIPKVTAERIREKEEGMVRDEDYAAGLWDDDEDFDEYGNAGGYVCPTCDNTNQVECSECGGKGFFVSASAMPKKCTYCNGLGTFDCEDCEERREMLRRERGARRPPRELPPARGDDFPFGR 252
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19563.6303.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIE3_ECTSI8.720e-10594.38Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19563contigEcto-sp13_S_contig19563:589..2690 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1267
Hectar predicted targeting categorysignal peptide
Exons3
Ec32 ortholog descriptionHeat shock protein DnaJ, cysteine-rich domain
Ec32 orthologEc-11_001580.1
Cds size456
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462990.9603887-UTR-Ecto-sp13_S_contig19563:588..6171681462990.9603887-UTR-Ecto-sp13_S_contig19563:588..617Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19563 589..617 +
1681462991.0017858-UTR-Ecto-sp13_S_contig19563:1908..26901681462991.0017858-UTR-Ecto-sp13_S_contig19563:1908..2690Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19563 1909..2690 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462990.9713297-CDS-Ecto-sp13_S_contig19563:617..8661681462990.9713297-CDS-Ecto-sp13_S_contig19563:617..866Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19563 618..866 +
1681462990.9844122-CDS-Ecto-sp13_S_contig19563:1213..13321681462990.9844122-CDS-Ecto-sp13_S_contig19563:1213..1332Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19563 1214..1332 +
1681462990.9926054-CDS-Ecto-sp13_S_contig19563:1820..19081681462990.9926054-CDS-Ecto-sp13_S_contig19563:1820..1908Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19563 1821..1908 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19563.6303.1prot_Ecto-sp13_S_contig19563.6303.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19563 618..1908 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19563.6303.1

>prot_Ecto-sp13_S_contig19563.6303.1 ID=prot_Ecto-sp13_S_contig19563.6303.1|Name=mRNA_Ecto-sp13_S_contig19563.6303.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=152bp
MLFGLHFQPPEFSVWLHGTVQAVMLGGFAALIPKVTAERIREKEEGMDRD
EDYAAGVWDDDEDVDEYGYAGGYVCPTCDNTNQVKCSECEGKGFFVSASA
MPKKCTYCNGLGTFDCEDCEERRETLRRERGARRPPRELPPARGDDFPFG
R*
back to top

mRNA from alignment at Ecto-sp13_S_contig19563:589..2690+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19563.6303.1 ID=mRNA_Ecto-sp13_S_contig19563.6303.1|Name=mRNA_Ecto-sp13_S_contig19563.6303.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2102bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19563:589..2690+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGAACTGGCGGTGGGCAGGATACGCGGATGCTTTTTGGTCTCCATTTC
CAGCCTCCAGAGTTCAGCGTCTGGCTCCACGGTACGGTACAGGCGGTCAT
GCTCGGTGGCTTCGCTGCCCTTATCCCGAAGGTGACCGCGGAGCGCATAC
GGGAAAAGGAGGAGGGAATGGACAGGGACGAGGATTATGCGGCCGGTGTG
TGGGACGACGACGAGGATGTCGATGAGTACGGGTATGCCGGGGGATACGT
GTGCCCGACGTGCGACAACACGAACCAGGTGCGTCCGTCCGATGGCGTGC
ACGCGTGGGCATTTTGCCTCGGGGAATATATCTCTAGAGTGTACTGTGTT
TATCGAGGGAACGTGTCACACGACAGGTGGATGCTGATGTCATTATTCCG
CACAAGCAACGTCGGAAGGTAGGTATATGACTGATGCCCACACCCGCTCA
TATGCATATACCCAACTGCAGCGGAATTTTTGTCCGTGGTATGCTGTAAA
GTCTCGATTGCAACTCAACGAACAGGTGAAGATAGATAAATGGGCCTCGT
TCCCGCAGCAGTGCCTCCAGTGTGGCGGAGCTTGATGCTCGTCCCCCCCT
CAACCGCGCTGTCTGATCCTCGCAGGTAAAGTGCAGCGAATGCGAAGGAA
AGGGTTTTTTCGTGTCGGCGTCCGCCATGCCCAAGAAGTGCACCTATTGC
AACGGGCTCGGGACGTTCGATTGCGAGGACTGCGAAGAACGCAGGTGCGA
CTTGACTGTTGCATCCACCGTTGAGCAGTCGCCAACGCCGGCGGTGCGAA
GGCGGGGCAATGCACATGTCCGCCCGGCGTTTGTGGTGTCGCATGTTTTT
TCGCGCGACTGCTGTGCTTGTGTCCAGCCCTGTCTGGTCAGTCATGTCAT
CCACAAGTTCCCGTGCGAAACAGCCACCCTGCTTGCATTGACGTGGTTTA
ATCTTCAAAGAACAACATCGCAGTTCGTTTCTCTGCTTCGTTCCTTCCGT
GTCGCAACATTTTTGAGAACAATAAGACGAGCATCGCATTAGAGCTACCG
GACAAGGTTTGCCTGTCCTGTGATCTTTCTGCTTGTTGACAGGGGATATC
ATTTTGCGATGGTACATGTATCGGAAACCGAAGGACAGTCGCGTGGCAGC
ACCGACGACGGCAGCCAGTTTTTTGTTTACCCTCTTTGCAGTTGACCCGC
GTGCTTTGACAATGGTTGCATTGAACCTACAGGGAAACGCTCCGGCGAGA
GAGGGGGGCGAGACGGCCTCCGCGGGAACTCCCTCCTGCCAGGGGAGACG
ACTTCCCGTTCGGTCGATGACTCGGTTTCGACAACTACCTCCGCGGCGTG
GAAGCTCGCTATCTTCGTGCCTTCGTTGACCTTTGGAGATAGCCACAGCC
ATTCCGGGGGCGACGAGCTATCGTTGGGTTGGGAGTATGCCCCAGCACAA
CCCCTTGCGTGCGTAGTGTTTTCGTCGAGCGGACTGTTTGGCTTGTGCTC
TCAATGGCATAGTAGCGGCTTGTGGCTCCGTTGGTGGCGTATACGCGCGA
GCTGGTGGTTGCTCTGGGGCACGGATGGACACGTGGTGCACAAGCGAGCG
AGTTGTATTGTAGACAACTGCATTTTGCGTAAGTAATTGAATGCGTTCCG
AGTACTCCTAAGATGAGGCCTGAGCAGCGAAACACGTGGGGTTCGCACGG
GATAGACCATGGCAGGGATAATGCCCAGGCTCGTTTTTGGTTGGCTGCTC
TTGAAGAAATCCCTTCGCACTGTTGTGGGCGAGGGCTGCTGTCGTTGTTG
TTGTTGTTGCTTGCTGTTGTTGTCTTCACACGAGGGCGCGTGACGAAATG
TACAGTACGTGTTTCTTGTTCCCGCTGGTCCGGTCCGAAGGCGACATATT
TCGAAGTTCCGAAGTAAAAGGAATGCACGATGCAGCGGTGGGAGAATTCG
TTTGTATCCTTGAGATTTTTCTATCGCTATGATCGGTGGACACACCACGT
ATGATCCCGCCGCTCGTAACACCGTGGGCCTGCTACGGTTGACATGGAAC
TCGGAACCTTGTAGGCTGTAATTCCACCTGTATACATACGGCTGTGAGCA
CC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19563:589..2690+

>mRNA_Ecto-sp13_S_contig19563.6303.1 ID=mRNA_Ecto-sp13_S_contig19563.6303.1|Name=mRNA_Ecto-sp13_S_contig19563.6303.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=456bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19563:589..2690+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTTTTTGGTCTCCATTTCCAGCCTCCAGAGTTCAGCGTCTGGCTCCA
CGGTACGGTACAGGCGGTCATGCTCGGTGGCTTCGCTGCCCTTATCCCGA
AGGTGACCGCGGAGCGCATACGGGAAAAGGAGGAGGGAATGGACAGGGAC
GAGGATTATGCGGCCGGTGTGTGGGACGACGACGAGGATGTCGATGAGTA
CGGGTATGCCGGGGGATACGTGTGCCCGACGTGCGACAACACGAACCAGG
TAAAGTGCAGCGAATGCGAAGGAAAGGGTTTTTTCGTGTCGGCGTCCGCC
ATGCCCAAGAAGTGCACCTATTGCAACGGGCTCGGGACGTTCGATTGCGA
GGACTGCGAAGAACGCAGGGAAACGCTCCGGCGAGAGAGGGGGGCGAGAC
GGCCTCCGCGGGAACTCCCTCCTGCCAGGGGAGACGACTTCCCGTTCGGT
CGATGA
back to top