mRNA_Ecto-sp13_S_contig1954.6293.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1954.6293.1
Unique NamemRNA_Ecto-sp13_S_contig1954.6293.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1954.6293.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1954contigEcto-sp13_S_contig1954:102..3138 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size839
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-09_002100.1
Cds size675
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1954.6293.1prot_Ecto-sp13_S_contig1954.6293.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1954 102..2974 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462990.2472198-CDS-Ecto-sp13_S_contig1954:101..3141681462990.2472198-CDS-Ecto-sp13_S_contig1954:101..314Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1954 102..314 -
1681462990.2613137-CDS-Ecto-sp13_S_contig1954:761..9371681462990.2613137-CDS-Ecto-sp13_S_contig1954:761..937Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1954 762..937 -
1681462990.2705197-CDS-Ecto-sp13_S_contig1954:1427..15691681462990.2705197-CDS-Ecto-sp13_S_contig1954:1427..1569Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1954 1428..1569 -
1681462990.2786872-CDS-Ecto-sp13_S_contig1954:2165..22141681462990.2786872-CDS-Ecto-sp13_S_contig1954:2165..2214Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1954 2166..2214 -
1681462990.2874475-CDS-Ecto-sp13_S_contig1954:2879..29741681462990.2874475-CDS-Ecto-sp13_S_contig1954:2879..2974Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1954 2880..2974 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462990.2967718-UTR-Ecto-sp13_S_contig1954:2974..31381681462990.2967718-UTR-Ecto-sp13_S_contig1954:2974..3138Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1954 2975..3138 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1954.6293.1

>prot_Ecto-sp13_S_contig1954.6293.1 ID=prot_Ecto-sp13_S_contig1954.6293.1|Name=mRNA_Ecto-sp13_S_contig1954.6293.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=225bp
MSHGGDDTTWEYVRPSSSFQNAGHYAPPSTPRVHAFPALPRTEPADWKGQ
PPVGGVGMDICKGCHNPYRGGFASFDLRFTYLKERGHQVSRSPGPGNYDT
RHLTGGALIKRPKTPSPCFRRPGGRLDFGVGGTWHKETPLESAEGYGTVR
GNLKKQAQHYSLSFRSTADRLMVNKPAMTTHEGIGPGCYDLSKDGKSVGV
WTEKRVGRRGPGGMGSTNQFLIDWR
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mRNA from alignment at Ecto-sp13_S_contig1954:102..3138-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1954.6293.1 ID=mRNA_Ecto-sp13_S_contig1954.6293.1|Name=mRNA_Ecto-sp13_S_contig1954.6293.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3037bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1954:102..3138- (Ectocarpus species13 EcNAP12_S_4_19m)
TGTAGTGGTGTGAAGGCAAGGCCTTGATACCTTTTTGGCTATTTGATACT
TTTCAACCACAGAGGAAAACTGCAAGGCCGTCCTGGAGAGTACCCTTAGG
AGGCGTACCGTGTAGACGTGTAACCCATCCGCTTTGGGGGAGGAACGCGC
GCCACCTCGGCAGAATGAGCCACGGGGGCGACGATACCACCTGGGAGTAC
GTTCGGCCATCATCTAGCTTCCAGAACGCAGGGCATTATGCGCCCCCATC
AACCCCAAGGTGAAATGCATCGCTGAGTGGATAGCCGAGGGGAAGCGGTA
AAGGAGACCTGGGAATTTGACACGTACAGTACAGAGAAAATCATTCACCT
TCAGCAGAGCAGCTACTGACACATGTGGCTTTAAAAGTATGTGCCCCGTT
ATAGTAAGGTGGTGGCCATCGTGGCTTGGGCGGTTTCCTCACAACCTTGC
GACGTTTAGATGGATATTCAGTCAGGACATTGTAGAGATCGATGCCTTTG
AGAGAACATTCAGAGAGTAACCGCTGAGTACAGTGCAGTACAGTACAGTA
CAGTACAGTACAGTATAGTACTGTGCCGTACACTTTAGTGCTGTACTGTA
CAGTAGATGGTGTTCGCGTTCAAGCCGGCCGGAAGACTGACGTCTTTACA
CTGGTCTGCAATTTAGCGCAATTGATCCATATCTAAACAGTAGACAGACA
CGCCTCCACACCTGCCAGTCGGCGGACGCAGTTGGTATGCACTGCGTGTG
TCCTACTGTGGAAGTACCATATGAAATTGGAATGAGAGAGCGTTTCCCAT
TACCGCAGGGTGCTGGTTCATGATATCTACATAAACTACAGCTGTATTTC
GTGCGCCTTGTCCTTTTCCCTGTTCTTCCATGTGTTGATGGGCCGTGCCA
CGGTTGAATGGGCTTCGTGGGCAGGGTGCATGCGTTCCCAGCGTTGCCGC
GGACCGAGCCGGCGGATTGGAAGGTACCACGATTTATCAACACGGCCAGA
GCTCGTTGCCCTTGAGTCGTGTCCGCAACACAACATGAAGTCTAACGTTT
ACGGGAGATTCTTGTCCATGACATGCATATGAACAGCGACCTCCGATGGA
AGTACACGTGTACACTGGTTGGTGCCGAACTATAATCGCTCGCGCTCAAC
CGATCCTAAGATTGGCATTTATTTTCTTGCGAAAACCTCCGCGGCCCTCA
CCATCGGTTTCCAAGCGAAAGGATAGAATTCCACTGCGCTCGAGCCTATG
TCTTCGCATTTTCTCACGTCAAAGGCAGCGAATTTTCTTCCGCTATGTCA
CTGCTATCATGCCTCACCGGCCAGAGGTCACCCCAAACACGTATCACTTT
CTTGCTGTTTCGTAGAAGCGAGCGGAAGTGACAGCGATTTTACCACCAGT
GAGCTCCTCCAGTGCGGACAAATTCATTCTGAAACAAGTGAAGCTCGTAA
GCCACAAGAACAGTAAACTCCCGTCCGAGGAGTCAGTTGGTCGTCACCTA
CAATAGCAGCAGTAGAACCAGACGTATCAATACCAACCATCGTGCTACAA
TGTAACACTACCGATGCAGGGGCAGCCACCTGTCGGGGGTGTTGGGATGG
ACATTTGCAAGGGCTGCCACAATCCTTATCGCGGAGGGTTTGCGTCGTTC
GACCTCCGCTTCACATACCTCAAGGAGAGGGGGCATCAGGTTTCTCGGTC
GCCGGGACCCGGTAAGAAAAGCCAGAGATATAGATGATTCCAAGCGCAAC
CGCCTGCCGCGGATACTCCATACCATCGTTCCAAAGCGGTCCGCACCATA
AATGGTACACGTACGATGCATGGATTGCCAGGAACTCCAGAACGATTCGC
AACACTCAGGACAATATTATTCTGTGTATTCGTCACGGGATCTACACTTT
AAGATTCCCCATACCTACGCGAGGAAGAGGATTTCACAACTACCTCGACA
TCATTTCGCCGACCTGGTTCCCAAGTACAATGGTGGTTCTCAACAATTTT
TCAGAGCTGTTCACTCCTCCAAGGTACTTCCAGGGTCGAGGCACGTTGGT
ATTAAGTTGGGCTGCTGCCCCCCTAGACCAGTTGATGGAGATTTACTCGA
GGAGAGCGTCGGAGTTGTGGCAGACCTTATGGTTGTGTCTGAACTGGCTC
GCGAGATCACTATTACACCTTTTCATGAACCCATTGGCCCAACTGCTGCA
GGCAACTACGACACTCGACACCTTACCGGCGGTGCCCTAATTAAGCGTCC
GAAGACCCCGTCCCCGTGCTTCCGTCGTCCTGGTGGCCGGCTGGACTTCG
GCGTTGGTGGGACATGGCACAAGGAAACGCCGCTCGAGAGCGCCGAGGGG
TACGGCACTGTTCGGGGCAACTTGAAGGTGATGACTTCGGGCCGTAACTC
TGTACAGCATGTTCTCTTGAGCTCAACCGTACTTCTGTTCTTGTCGAAAA
TAGCTGCTTTACAGCAAGCTCCATGAGTGACTTGAGCAATGTACGTGGCT
GTTTGGAGCAACATGACCTCACACGTGTCAGCACTGTCCGCAACGCCCGC
TGTTGTGGCACGAGAAACTCGTTAACTTCGCCTCGGGGCGGTACAGATGC
ATTCAAAGGGCGCTTACGATACAGGCAGCCAAGCAACTGCTTCAGGCTTG
TTGAGTCTTGTTGTGAAACCGTAACCACGTTGCCTCTCCGGTTCGGAACA
GTCCATCTCGGAACGTCCCAGTAAGATTGGAGGCAGACACATATTCACAG
CGCCTCCCTGCTCCCTGTGAAATCTTTCCCGACTCACCACTCGTTCATAT
TCACCGCAAACTCCAAACCACCAGAAACAGGCTCAGCACTACAGCCTAAG
CTTTCGGTCGACGGCGGACAGGCTAATGGTTAACAAACCGGCCATGACCA
CCCACGAAGGAATCGGTCCCGGCTGCTACGACCTCTCCAAGGATGGTAAG
TCCGTCGGGGTATGGACGGAGAAGCGGGTGGGCCGAAGGGGTCCGGGGGG
AATGGGATCGACTAACCAGTTCCTCATCGACTGGCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1954:102..3138-

>mRNA_Ecto-sp13_S_contig1954.6293.1 ID=mRNA_Ecto-sp13_S_contig1954.6293.1|Name=mRNA_Ecto-sp13_S_contig1954.6293.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=675bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1954:102..3138- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCCACGGGGGCGACGATACCACCTGGGAGTACGTTCGGCCATCATC
TAGCTTCCAGAACGCAGGGCATTATGCGCCCCCATCAACCCCAAGGGTGC
ATGCGTTCCCAGCGTTGCCGCGGACCGAGCCGGCGGATTGGAAGGGGCAG
CCACCTGTCGGGGGTGTTGGGATGGACATTTGCAAGGGCTGCCACAATCC
TTATCGCGGAGGGTTTGCGTCGTTCGACCTCCGCTTCACATACCTCAAGG
AGAGGGGGCATCAGGTTTCTCGGTCGCCGGGACCCGGCAACTACGACACT
CGACACCTTACCGGCGGTGCCCTAATTAAGCGTCCGAAGACCCCGTCCCC
GTGCTTCCGTCGTCCTGGTGGCCGGCTGGACTTCGGCGTTGGTGGGACAT
GGCACAAGGAAACGCCGCTCGAGAGCGCCGAGGGGTACGGCACTGTTCGG
GGCAACTTGAAGAAACAGGCTCAGCACTACAGCCTAAGCTTTCGGTCGAC
GGCGGACAGGCTAATGGTTAACAAACCGGCCATGACCACCCACGAAGGAA
TCGGTCCCGGCTGCTACGACCTCTCCAAGGATGGTAAGTCCGTCGGGGTA
TGGACGGAGAAGCGGGTGGGCCGAAGGGGTCCGGGGGGAATGGGATCGAC
TAACCAGTTCCTCATCGACTGGCGG
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