mRNA_Ecto-sp13_S_contig19530.6289.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19530.6289.1
Unique NamemRNA_Ecto-sp13_S_contig19530.6289.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19530.6289.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19530contigEcto-sp13_S_contig19530:1068..1689 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size622
Hectar predicted targeting categoryother localisation
Exons1
Cds size378
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462989.9608994-UTR-Ecto-sp13_S_contig19530:1067..12821681462989.9608994-UTR-Ecto-sp13_S_contig19530:1067..1282Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19530 1068..1282 +
1681462989.9786973-UTR-Ecto-sp13_S_contig19530:1660..16891681462989.9786973-UTR-Ecto-sp13_S_contig19530:1660..1689Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19530 1661..1689 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462989.9702482-CDS-Ecto-sp13_S_contig19530:1282..16601681462989.9702482-CDS-Ecto-sp13_S_contig19530:1282..1660Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19530 1283..1660 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19530.6289.1prot_Ecto-sp13_S_contig19530.6289.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19530 1283..1660 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19530.6289.1

>prot_Ecto-sp13_S_contig19530.6289.1 ID=prot_Ecto-sp13_S_contig19530.6289.1|Name=mRNA_Ecto-sp13_S_contig19530.6289.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=126bp
MDLTTKSRGCESQETQFQVSKPEPGNKRTGEGRREGKRGGTGEEKEGVRR
TGPLVASSLSKTRQRGYVGFSMKSREREGGCGHKVQSSQSREACKRVFPR
SDRERRNPRPPPLLLPAQRSIKAER*
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mRNA from alignment at Ecto-sp13_S_contig19530:1068..1689+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19530.6289.1 ID=mRNA_Ecto-sp13_S_contig19530.6289.1|Name=mRNA_Ecto-sp13_S_contig19530.6289.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=622bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19530:1068..1689+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAAGTCAAGAAGCCCCCCCCCCCTCGGTCCCGAGTACTAGAAGAATCCAA
GAAACCACCCATGTGTTGTCCCCCTCCTTCGGGCCGAAGCCAAGCCGATT
CAAGCCAAGCCCCCAAGTCACGCGTCTGTCTCAATTAGTGTTGGCGTTTT
TCAACCAAGACGTCCCTGCTGGGCCAACAACCTTGTTGAGAGGGGGTGAG
AGAGTTTGAGCGGGGATGGATCTCACGACAAAGAGCCGTGGATGTGAATC
CCAAGAGACGCAATTCCAAGTTTCCAAGCCCGAGCCAGGGAACAAGAGGA
CGGGAGAGGGAAGAAGGGAAGGGAAGAGAGGAGGAACGGGAGAAGAAAAA
GAGGGGGTTCGGCGGACAGGCCCCTTGGTCGCCTCGAGCTTGTCCAAAAC
GCGCCAGCGGGGTTACGTGGGTTTCTCTATGAAGTCGCGGGAAAGAGAAG
GGGGGTGCGGGCACAAGGTCCAGTCAAGCCAATCAAGAGAAGCTTGCAAG
AGAGTATTTCCAAGATCCGACAGAGAAAGAAGAAATCCGCGTCCCCCCCC
TCTGTTGCTGCCGGCGCAGAGGAGCATCAAGGCGGAACGGTGATTCGGTC
GTGTGCCAGAGGCTGTGTATGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19530:1068..1689+

>mRNA_Ecto-sp13_S_contig19530.6289.1 ID=mRNA_Ecto-sp13_S_contig19530.6289.1|Name=mRNA_Ecto-sp13_S_contig19530.6289.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=378bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19530:1068..1689+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATCTCACGACAAAGAGCCGTGGATGTGAATCCCAAGAGACGCAATT
CCAAGTTTCCAAGCCCGAGCCAGGGAACAAGAGGACGGGAGAGGGAAGAA
GGGAAGGGAAGAGAGGAGGAACGGGAGAAGAAAAAGAGGGGGTTCGGCGG
ACAGGCCCCTTGGTCGCCTCGAGCTTGTCCAAAACGCGCCAGCGGGGTTA
CGTGGGTTTCTCTATGAAGTCGCGGGAAAGAGAAGGGGGGTGCGGGCACA
AGGTCCAGTCAAGCCAATCAAGAGAAGCTTGCAAGAGAGTATTTCCAAGA
TCCGACAGAGAAAGAAGAAATCCGCGTCCCCCCCCTCTGTTGCTGCCGGC
GCAGAGGAGCATCAAGGCGGAACGGTGA
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