mRNA_Ecto-sp13_S_contig19517.6280.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19517.6280.1
Unique NamemRNA_Ecto-sp13_S_contig19517.6280.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19517.6280.1 vs. uniprot
Match: D7G058_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G058_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 6.450e-25
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 1 
Query:    1 LPTYANFVVAGASGMSAWVFIHPADLIKTRMQLLGDGKKGATAVSVGKDLV 153
            LPTYANFVVAGASGMSAWVFIHPADLIKTRMQLLGD KKGATAVSVGKDLV
Sbjct:   33 LPTYANFVVAGASGMSAWVFIHPADLIKTRMQLLGDSKKGATAVSVGKDLV 83
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BLAST of mRNA_Ecto-sp13_S_contig19517.6280.1 vs. uniprot
Match: A0A835Z4J2_9STRA (Mitochondrial carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4J2_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 9.930e-10
Identity = 29/43 (67.44%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:    1 LPTYANFVVAGASGMSAWVFIHPADLIKTRMQLLGDGKKGATA 129
            +P  A F VAGASG+SAW+FIHPADLIK RMQLLG+     TA
Sbjct:    8 VPMAATFAVAGASGISAWMFIHPADLIKVRMQLLGNSGAKTTA 50
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BLAST of mRNA_Ecto-sp13_S_contig19517.6280.1 vs. uniprot
Match: A0A6J1WDJ8_GALME (mitochondrial 2-oxoglutarate/malate carrier protein-like n=1 Tax=Galleria mellonella TaxID=7137 RepID=A0A6J1WDJ8_GALME)

HSP 1 Score: 59.3 bits (142), Expect = 4.750e-9
Identity = 27/51 (52.94%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:    1 LPTYANFVVAGASGMSAWVFIHPADLIKTRMQLLGDGKKGATAVSVGKDLV 153
            +P + NFV+ G SGM A   + PADL+KTRMQLLG   KG +A+SV K ++
Sbjct:   11 IPGWINFVIGGLSGMMATCIVQPADLLKTRMQLLGPEAKGQSAISVAKGIL 61
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BLAST of mRNA_Ecto-sp13_S_contig19517.6280.1 vs. uniprot
Match: A0A835GKQ6_SPOEX (Uncharacterized protein n=2 Tax=Spodoptera exigua TaxID=7107 RepID=A0A835GKQ6_SPOEX)

HSP 1 Score: 59.3 bits (142), Expect = 4.770e-9
Identity = 26/51 (50.98%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:    1 LPTYANFVVAGASGMSAWVFIHPADLIKTRMQLLGDGKKGATAVSVGKDLV 153
            +P Y NF++ G SGM A   + PADL+KTRMQLLG   K  T + V +D+V
Sbjct:   16 IPKYMNFIIGGTSGMMAISLVQPADLLKTRMQLLGPAGKNMTFIQVARDIV 66
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BLAST of mRNA_Ecto-sp13_S_contig19517.6280.1 vs. uniprot
Match: A0A7S1JD16_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1JD16_9EUGL)

HSP 1 Score: 57.4 bits (137), Expect = 2.400e-8
Identity = 22/51 (43.14%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:    1 LPTYANFVVAGASGMSAWVFIHPADLIKTRMQLLGDGKKGATAVSVGKDLV 153
            +P + +F   GA G++ W+F+HP D++KTRMQLLG G K    VS+   ++
Sbjct:    4 VPAWVHFATGGAGGITGWMFVHPMDVLKTRMQLLGSGGKNTGVVSLASGIL 54
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BLAST of mRNA_Ecto-sp13_S_contig19517.6280.1 vs. uniprot
Match: A0A0L7KTD4_9NEOP (Putative Mitochondrial 2-oxoglutarate/malate carrier protein n=1 Tax=Operophtera brumata TaxID=104452 RepID=A0A0L7KTD4_9NEOP)

HSP 1 Score: 57.4 bits (137), Expect = 2.410e-8
Identity = 25/51 (49.02%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:    1 LPTYANFVVAGASGMSAWVFIHPADLIKTRMQLLGDGKKGATAVSVGKDLV 153
            +P Y NF+  G SGM A   + PADL+KTRMQLLG   K  + ++V KD++
Sbjct:   12 IPGYMNFIFGGTSGMLATSVVQPADLLKTRMQLLGPAGKNMSTITVAKDII 62
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BLAST of mRNA_Ecto-sp13_S_contig19517.6280.1 vs. uniprot
Match: A0A2A4JKN9_HELVI (Uncharacterized protein n=1 Tax=Heliothis virescens TaxID=7102 RepID=A0A2A4JKN9_HELVI)

HSP 1 Score: 57.0 bits (136), Expect = 3.310e-8
Identity = 25/51 (49.02%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:    1 LPTYANFVVAGASGMSAWVFIHPADLIKTRMQLLGDGKKGATAVSVGKDLV 153
            +P + NF++ GASGM A   + PADL+KTRMQLLG   +  +A +V +D+V
Sbjct:   14 MPKWMNFIIGGASGMMAIAVVQPADLLKTRMQLLGPAGRDLSAFTVAQDIV 64
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BLAST of mRNA_Ecto-sp13_S_contig19517.6280.1 vs. uniprot
Match: A0A8N7VVK5_SPOFR (mitochondrial 2-oxoglutarate/malate carrier protein-like isoform X3 n=1 Tax=Spodoptera frugiperda TaxID=7108 RepID=A0A8N7VVK5_SPOFR)

HSP 1 Score: 56.6 bits (135), Expect = 3.410e-8
Identity = 25/51 (49.02%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:    1 LPTYANFVVAGASGMSAWVFIHPADLIKTRMQLLGDGKKGATAVSVGKDLV 153
            +P Y NF++ G +GM     + PADL+KTRMQLLG   K A+ V V K++V
Sbjct:   15 IPKYMNFIIGGTAGMMGISVVQPADLLKTRMQLLGPAGKNASFVGVAKEIV 65
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BLAST of mRNA_Ecto-sp13_S_contig19517.6280.1 vs. uniprot
Match: A0A0L7LD07_9NEOP (Slowpoke binding protein n=1 Tax=Operophtera brumata TaxID=104452 RepID=A0A0L7LD07_9NEOP)

HSP 1 Score: 57.0 bits (136), Expect = 3.800e-8
Identity = 24/51 (47.06%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:    1 LPTYANFVVAGASGMSAWVFIHPADLIKTRMQLLGDGKKGATAVSVGKDLV 153
            +P Y NF++ G+SGM A   + PADL+KTRMQLLG   K  + + V K+++
Sbjct:  341 IPAYMNFILGGSSGMLATSVVQPADLLKTRMQLLGPAGKNMSTIRVAKEII 391
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BLAST of mRNA_Ecto-sp13_S_contig19517.6280.1 vs. uniprot
Match: A0A8N7VUF6_SPOFR (mitochondrial 2-oxoglutarate/malate carrier protein-like isoform X2 n=3 Tax=Spodoptera frugiperda TaxID=7108 RepID=A0A8N7VUF6_SPOFR)

HSP 1 Score: 56.6 bits (135), Expect = 4.190e-8
Identity = 25/51 (49.02%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:    1 LPTYANFVVAGASGMSAWVFIHPADLIKTRMQLLGDGKKGATAVSVGKDLV 153
            +P Y NF++ G +GM     + PADL+KTRMQLLG   K A+ V V K++V
Sbjct:   15 IPKYMNFIIGGTAGMMGISVVQPADLLKTRMQLLGPAGKNASFVGVAKEIV 65
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19517.6280.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G058_ECTSI6.450e-2598.04Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z4J2_9STRA9.930e-1067.44Mitochondrial carrier domain-containing protein n=... [more]
A0A6J1WDJ8_GALME4.750e-952.94mitochondrial 2-oxoglutarate/malate carrier protei... [more]
A0A835GKQ6_SPOEX4.770e-950.98Uncharacterized protein n=2 Tax=Spodoptera exigua ... [more]
A0A7S1JD16_9EUGL2.400e-843.14Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A0L7KTD4_9NEOP2.410e-849.02Putative Mitochondrial 2-oxoglutarate/malate carri... [more]
A0A2A4JKN9_HELVI3.310e-849.02Uncharacterized protein n=1 Tax=Heliothis virescen... [more]
A0A8N7VVK5_SPOFR3.410e-849.02mitochondrial 2-oxoglutarate/malate carrier protei... [more]
A0A0L7LD07_9NEOP3.800e-847.06Slowpoke binding protein n=1 Tax=Operophtera bruma... [more]
A0A8N7VUF6_SPOFR4.190e-849.02mitochondrial 2-oxoglutarate/malate carrier protei... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19517contigEcto-sp13_S_contig19517:461..613 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score103.2
Seed ortholog evalue3.6e-20
Seed eggNOG ortholog2880.D7G058
Model size153
KEGG koko:K15104
KEGG TC2.A.29.2.1,2.A.29.2.9
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.thiosulfate transmembrane transporter activity
EggNOG OGsKOG0759@1,KOG0759@2759
Cds size153
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462989.3411665-CDS-Ecto-sp13_S_contig19517:460..6131681462989.3411665-CDS-Ecto-sp13_S_contig19517:460..613Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19517 461..613 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19517.6280.1prot_Ecto-sp13_S_contig19517.6280.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19517 461..613 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19517.6280.1

>prot_Ecto-sp13_S_contig19517.6280.1 ID=prot_Ecto-sp13_S_contig19517.6280.1|Name=mRNA_Ecto-sp13_S_contig19517.6280.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=51bp
LPTYANFVVAGASGMSAWVFIHPADLIKTRMQLLGDGKKGATAVSVGKDL
V
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mRNA from alignment at Ecto-sp13_S_contig19517:461..613-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19517.6280.1 ID=mRNA_Ecto-sp13_S_contig19517.6280.1|Name=mRNA_Ecto-sp13_S_contig19517.6280.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=153bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19517:461..613- (Ectocarpus species13 EcNAP12_S_4_19m)
CTGCCAACGTATGCAAACTTTGTCGTAGCTGGGGCAAGCGGCATGTCTGC
CTGGGTGTTCATCCACCCTGCCGACTTGATCAAGACTCGGATGCAGCTGC
TGGGGGACGGCAAGAAGGGTGCCACTGCTGTCTCCGTCGGGAAGGACCTG
GTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19517:461..613-

>mRNA_Ecto-sp13_S_contig19517.6280.1 ID=mRNA_Ecto-sp13_S_contig19517.6280.1|Name=mRNA_Ecto-sp13_S_contig19517.6280.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=153bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19517:461..613- (Ectocarpus species13 EcNAP12_S_4_19m)
CTGCCAACGTATGCAAACTTTGTCGTAGCTGGGGCAAGCGGCATGTCTGC
CTGGGTGTTCATCCACCCTGCCGACTTGATCAAGACTCGGATGCAGCTGC
TGGGGGACGGCAAGAAGGGTGCCACTGCTGTCTCCGTCGGGAAGGACCTG
GTA
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