mRNA_Ecto-sp13_S_contig1949.6267.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1949.6267.1
Unique NamemRNA_Ecto-sp13_S_contig1949.6267.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1949.6267.1 vs. uniprot
Match: A0A6H5LBB4_9PHAE (TsaA-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LBB4_9PHAE)

HSP 1 Score: 1127 bits (2915), Expect = 0.000e+0
Identity = 596/640 (93.12%), Postives = 609/640 (95.16%), Query Frame = 2
Query:  218 MGPTAAVIATNILALCSALAVGFAVGRFAGGGGKKETQQHPCSVRGAKRRARIKKSEDNSRAKAAGLASXXXXXXXXXXXVLSSRRTRSRKKKLGPRCLALDAWTRVARSYITSIGEGDYESLLLLPRACFIVAGRFVPYAECRDQLVSLGQARAATAGVEQLRVLYVSCSWASAGGGEGKGWAVQDFETTRAYLQRNPDLSFVYVGRSCVAGSSSSTGHVRSTQLRHVAPALLRSDAVLVLPRLAECAGGGESSGSMGSRYTDFECSARGSRSRMVLAIAAVGQAKVFVAFRAGSYPESVVELELGKGNVRATAKQAVDALRAAAAKRPQKSTAAVVKEACENWLGADLNPLSALEQARAVVEEAQKSDDGEALENIRTMRPAPSFAANARAVLGDEFVGGERELALSMLLFAVLCSQPKERATYTENFVQDVGKMEISYRPVAVVRSPYRERFGTPRQPQVTASVLHGGAQEGQIVFLRGRGYEEALQDLSGFDMIWVLTHMHLNKGWNPKVRPPRLPEERKGLFSTRSPHRPNAIALSSLRVGRVDAANGVIYVHGLDLLDGTPVLDIKPYIGYCDAFPNVKAGWLDALGSDHEGQGNFLPKFSVGATLVHTDPGSKRSPTWTASRKPPATNQVEAS 2137
            MGPT AV+A NILAL SAL VG+AVGRF GGGGKKETQQHPCSVRGAKRRARIKKSEDNSRA+AAGLASXXXXXXXXXXX      TRSRKKKL PRCLALDAWTRVARSYI SIGEGDYESLLLLPR CFIVAGRFVPYAECRDQLVSLGQARAATAGVEQLRVLYVSCSWASAGGGEG GWAVQDFETTRAYLQRNPDLSFVYVGRSCV GSSSSTGHVRSTQLRHVAPALLRSDAVLVLPRLA+  GG E SGS G+RYTDFECSARGSRSRMVLAIAAVGQAKVFVAFRAGSYPESVVELELGK NVRATAKQAVDALRAAAAKRPQKSTAAVV+EACENWLGADLNPLSALEQARAVVEEAQ+SDDGEALENI++MRPAPSFAANARA LGDEF+G ERELALSMLLFAVLCSQ KERATYTENFV+DVGKMEISY PVAVVRSPYRERFGTPRQPQVTASVLHGGAQEGQIVFLRGRGYEEALQDLSGFDMIWVLTHMHLNKGWNPKVRPPRLPEERKGLFSTRSPHRPNAIALSSLRVGRVDAANGVIYVHGLDLLDGTPVLDIKPYIGYCDAFPNVKAGWLDALGSDHE QG+FLPKFSVGATLVHTD GSKRSPT TASRKPP  +QVEAS
Sbjct:    1 MGPTVAVVAANILALSSALVVGYAVGRFEGGGGKKETQQHPCSVRGAKRRARIKKSEDNSRARAAGLASXXXXXXXXXXXXXXXXXTRSRKKKLAPRCLALDAWTRVARSYIKSIGEGDYESLLLLPRECFIVAGRFVPYAECRDQLVSLGQARAATAGVEQLRVLYVSCSWASAGGGEGTGWAVQDFETTRAYLQRNPDLSFVYVGRSCVVGSSSSTGHVRSTQLRHVAPALLRSDAVLVLPRLAKSPGGEEGSGSTGTRYTDFECSARGSRSRMVLAIAAVGQAKVFVAFRAGSYPESVVELELGKSNVRATAKQAVDALRAAAAKRPQKSTAAVVEEACENWLGADLNPLSALEQARAVVEEAQRSDDGEALENIQSMRPAPSFAANARAALGDEFIGEERELALSMLLFAVLCSQRKERATYTENFVEDVGKMEISYCPVAVVRSPYRERFGTPRQPQVTASVLHGGAQEGQIVFLRGRGYEEALQDLSGFDMIWVLTHMHLNKGWNPKVRPPRLPEERKGLFSTRSPHRPNAIALSSLRVGRVDAANGVIYVHGLDLLDGTPVLDIKPYIGYCDAFPNVKAGWLDALGSDHERQGDFLPKFSVGATLVHTDAGSKRSPTRTASRKPPTADQVEAS 640          
BLAST of mRNA_Ecto-sp13_S_contig1949.6267.1 vs. uniprot
Match: A0A835YNQ9_9STRA (TsaA-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNQ9_9STRA)

HSP 1 Score: 222 bits (565), Expect = 4.260e-64
Identity = 100/154 (64.94%), Postives = 122/154 (79.22%), Query Frame = 2
Query: 1547 VAVVRSPYRERFGTPRQPQVTASVLHGGAQEGQIVFLRGRGYEEALQDLSGFDMIWVLTHMHLNKGWNPKVRPPRLPEERKGLFSTRSPHRPNAIALSSLRVGRVDAANGVIYVHGLDLLDGTPVLDIKPYIGYCDAFPNVKAGWLDALGSDHE 2008
            + VVRSPY+ERFGTPRQ  VTA VL G AQ GQ+VF RGR +E AL+DL GFD +WV+++MHLN+GWNPKV+PPR P  ++GLFSTRSPHRPN+IALS++++  VD     + V GLDLLDGTP+LDIKPY+ YCDAFP  K GWL+ L S  E
Sbjct:    6 IGVVRSPYKERFGTPRQANVTAGVLEGKAQHGQLVFSRGRNFEVALEDLDGFDYVWVISYMHLNQGWNPKVKPPRGPRVKRGLFSTRSPHRPNSIALSAVKIVSVDPKGLTVTVEGLDLLDGTPILDIKPYVPYCDAFPGAKTGWLEELSSIDE 159          
BLAST of mRNA_Ecto-sp13_S_contig1949.6267.1 vs. uniprot
Match: A0A7S3XP01_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XP01_HETAK)

HSP 1 Score: 208 bits (529), Expect = 6.210e-58
Identity = 100/172 (58.14%), Postives = 124/172 (72.09%), Query Frame = 2
Query: 1478 KERATYTENFVQDVGKMEISYRPVAVVRSPYRERFGTPRQPQVTASVLHGGAQEGQIVFLRGRGYEEALQDLSGFDMIWVLTHMHLNKGWNPKVRPPRLPEERK-GLFSTRSPHRPNAIALSSLRVGRVDAANGVIYVHGLDLLDGTPVLDIKPYIGYCDAFPNVKAGWLDA 1990
            K +  YTE F        +S   +AVVRSPY+ERFGTPRQP VT   L G AQ G+IVF + R +E ALQDL GF+  W++T+ HLNKGWNPKV+PPR   + K GLF+TRSPHRPN I LS+ ++  VD   GV+ V GLDLLDGTPVLD+KPY+ Y DAFP+ +AGWL++
Sbjct:   55 KPQQFYTEQFTTPES---VSMETIAVVRSPYKERFGTPRQPVVTKGTLGGSAQIGEIVFKKNRNFEIALQDLEGFEYCWLITYFHLNKGWNPKVKPPRGKHDAKLGLFATRSPHRPNPIGLSACKIHSVDHRQGVVRVAGLDLLDGTPVLDLKPYVPYADAFPHARAGWLNS 223          
BLAST of mRNA_Ecto-sp13_S_contig1949.6267.1 vs. uniprot
Match: A0A7S1WEL1_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1WEL1_ALECA)

HSP 1 Score: 193 bits (491), Expect = 4.990e-53
Identity = 86/164 (52.44%), Postives = 123/164 (75.00%), Query Frame = 2
Query: 1526 MEISYRPVAVVRSPYRERFGTPRQPQVTASVLHGGAQEGQIVFLRGRGYEEAL--QDLSGFDMIWVLTHMHLNKGWNPKVRPPRLPEERKGLFSTRSPHRPNAIALSSLRVGRVDAANGVIYVHGLDLLDGTPVLDIKPYIGYCDAFPNVKAGWLDALGSDHEG 2011
            ++++ R + VVRSPY+ERFG PRQP ++  VL G AQEG I FL     + AL  +DL GF+ IW++ ++HLN+GW+P+V PPR   +++GLF+TRSPHRPN I+LS+ ++  VDA    + V GLDLLDGTPVLD+KPY+ YCD++P+ +AGW+D +  +H+G
Sbjct:   39 LQVTLRTIGVVRSPYKERFGCPRQPPISKGVLGGSAQEGTIQFLDNPDGDIALALKDLEGFERIWIVGYLHLNEGWSPRVTPPRGARQKRGLFATRSPHRPNHISLSACQLLSVDAKAKTLTVRGLDLLDGTPVLDVKPYVPYCDSYPSARAGWIDEVEGEHDG 202          
BLAST of mRNA_Ecto-sp13_S_contig1949.6267.1 vs. uniprot
Match: UPI001AD54E4C (tRNA (Adenine(37)-N6)-methyltransferase n=2 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=UPI001AD54E4C)

HSP 1 Score: 191 bits (485), Expect = 1.060e-52
Identity = 89/152 (58.55%), Postives = 113/152 (74.34%), Query Frame = 2
Query: 1547 VAVVRSPYRERFGTPRQPQVTASVLHGGAQEGQIVFLRGRGYEEALQDLSGFDMIWVLTHMHLNKGWNPKVRPPRLPEERKGLFSTRSPHRPNAIALSSLRVGRVDAANGVIYVHGLDLLDGTPVLDIKPYIGYCDAFPNVKAGWLDALGSD 2002
            +  V SPY+ERFGTPRQP VT   L   AQE  I  + GR +E+AL+DL GF+ IWVL  +HLN+GWNP+V PPR P+ ++GLF+TR+PHRPN+I LS+L++  +D     + V G+DLLDGTPVLDIKPYI Y DAFP  +AGWL+ L SD
Sbjct:   25 IGYVHSPYKERFGTPRQPPVTEQTLDDRAQEAMIELVPGRNFEQALKDLEGFEYIWVLAWLHLNEGWNPQVIPPRGPKVKRGLFATRAPHRPNSIGLSALKLVGIDGRT--LKVSGIDLLDGTPVLDIKPYIPYSDAFPKARAGWLEGLKSD 174          
BLAST of mRNA_Ecto-sp13_S_contig1949.6267.1 vs. uniprot
Match: R1DL83_EMIHU (TsaA-like domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DL83_EMIHU)

HSP 1 Score: 193 bits (491), Expect = 5.380e-52
Identity = 99/200 (49.50%), Postives = 126/200 (63.00%), Query Frame = 2
Query: 1493 YTENFVQDVGKMEISYRPVAVVRSPYRERFGTPRQPQVTASVLHGGAQEGQIVFLRGRGYEEALQDLSGFDMIWVLTHMHLNKGWNPKVRPPRLPEERK-GLFSTRSPHRPNAIALSSLRVGRVDAANGVIYVHGLDLLDGTPVLDIKPYIGYCDAFPNVKAGWLDALGSDHEGQGNFLPKFSV----GATLVHTDPGSK 2077
            YT+ F  D     ++  P+ V+RSPY+ERFGTPRQP VT  V  GGAQ G I      G +  L+ L+GFD  W +T MHLN GW P VRPPR P   K G+F+TR+PHRPN IALS+L+V  VD A   + V GLDLLDGTPVLD+KPY+ Y D+FP  KAGW+D + ++ +  G + P   +       +  T P SK
Sbjct:   32 YTDAFA-DHAAAPVTLTPIGVIRSPYKERFGTPRQPTVTTQVSGGGAQRGCIELRPDAGLDHTLRGLAGFDYCWAITLMHLNAGWKPLVRPPRGPRRAKQGVFATRAPHRPNPIALSALKVVEVDEAALRVTVEGLDLLDGTPVLDLKPYVPYADSFPRAKAGWVDEVRAEEDRLGYWPPPPHLLQQQRVAMCQTSPASK 230          
BLAST of mRNA_Ecto-sp13_S_contig1949.6267.1 vs. uniprot
Match: A0A0G4F040_VITBC (TsaA-like domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F040_VITBC)

HSP 1 Score: 192 bits (488), Expect = 5.670e-52
Identity = 98/181 (54.14%), Postives = 122/181 (67.40%), Query Frame = 2
Query: 1532 ISYRPVAVVRSPYRERFGTPRQPQVTASVLHGGAQEGQIVFLRGRGYEEALQDLSGFDMIWVLTHMHLNKGWNPKVR--PPRLPEERKGLFSTRSPHRPNAIALSSLRVGRVDAANGVIYVHGLDLLDGTPVLDIKPYIGYCDAFPNVKAGWLDALGSDHEGQ------GNFLPKFSVGAT 2050
            I   P+ VVRSPY+ERFGTPRQP VT   L G  Q   +  LRG GYE  L+D+ GF+ +W++T+MHLN+GW  KVR  P +LP  R GLF+TR+PHRPN +ALS++ V  VD   G +++ GLDLLDGTPVLDIKPY+ Y DAFP+  AGWLD    D E Q      G+ LP +  G T
Sbjct:   87 IEMHPIGVVRSPYKERFGTPRQPVVTEGTLGGVKQNATVQLLRGHGYEACLEDVEGFERVWLITYMHLNQGWRSKVRVYPRKLPR-RLGLFATRAPHRPNQLALSAVEVVGVDVDAGQLHILGLDLLDGTPVLDIKPYVPYADAFPDSAAGWLDQY--DREQQMGRDEFGHELPPWCAGDT 264          
BLAST of mRNA_Ecto-sp13_S_contig1949.6267.1 vs. uniprot
Match: A0A6N6JQK0_9BACT (tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO n=3 Tax=Bacteria TaxID=2 RepID=A0A6N6JQK0_9BACT)

HSP 1 Score: 189 bits (479), Expect = 7.270e-52
Identity = 88/149 (59.06%), Postives = 111/149 (74.50%), Query Frame = 2
Query: 1556 VRSPYRERFGTPRQPQVTASVLHGGAQEGQIVFLRGRGYEEALQDLSGFDMIWVLTHMHLNKGWNPKVRPPRLPEERKGLFSTRSPHRPNAIALSSLRVGRVDAANGVIYVHGLDLLDGTPVLDIKPYIGYCDAFPNVKAGWLDALGSD 2002
            VRSPY+ERFGTPRQP VTA  L   A + +I  L    +E+ALQDL GF+ IWVL  +HLN GWNP+V PPR P+ ++GLF+TR+PHRPN I LS+LR+ RV+    V++V G+DLLDGTPVLD+KPY+ Y DAF   +AGWL+ L  D
Sbjct:   28 VRSPYKERFGTPRQPVVTAQTLEDRALDARIELLPAMNFEQALQDLEGFEYIWVLAWLHLNSGWNPQVMPPRGPKVKRGLFATRAPHRPNPIGLSALRLIRVEGR--VLHVRGIDLLDGTPVLDVKPYVPYSDAFAAARAGWLEGLAQD 174          
BLAST of mRNA_Ecto-sp13_S_contig1949.6267.1 vs. uniprot
Match: A0A7V8E2B3_9BACT (TsaA-like domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7V8E2B3_9BACT)

HSP 1 Score: 189 bits (479), Expect = 7.270e-52
Identity = 90/154 (58.44%), Postives = 113/154 (73.38%), Query Frame = 2
Query: 1532 ISYRPVAVVRSPYRERFGTPRQPQVTASVLHGGAQEGQIVFLRGRGYEEALQDLSGFDMIWVLTHMHLNKGWNPKVRPPRLPEERKGLFSTRSPHRPNAIALSSLRVGRVDAANGVIYVHGLDLLDGTPVLDIKPYIGYCDAFPNVKAGWLDAL 1993
            +S   +  VRSPY+ERFGTPRQP VT   L   A E  I  L GR +E+AL+DL GFD IWVL  +HLN+GW+P+V PPR PE ++GLF+TR+PHRPN I+LS+LR+  ++    V+ V G+DLLDGTPVLDIKPYI Y DAFP+ + GWL  L
Sbjct:   20 VSCEIIGHVRSPYKERFGTPRQPPVTEQTLEDRALEASIELLPGRNFEQALKDLEGFDYIWVLAWLHLNEGWSPQVIPPRGPEVKRGLFATRAPHRPNPISLSALRLLGIEGR--VLKVRGIDLLDGTPVLDIKPYIPYSDAFPDARTGWLKGL 171          
BLAST of mRNA_Ecto-sp13_S_contig1949.6267.1 vs. uniprot
Match: A0A7S3A0C0_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A0C0_9RHOD)

HSP 1 Score: 191 bits (484), Expect = 9.020e-52
Identity = 86/154 (55.84%), Postives = 111/154 (72.08%), Query Frame = 2
Query: 1532 ISYRPVAVVRSPYRERFGTPRQPQVTASVLHGGAQEGQIVFLRGRGYEEALQDLSGFDMIWVLTHMHLNKGWNPKVRPPRLPEERKGLFSTRSPHRPNAIALSSLRVGRVDAANGVIYVHGLDLLDGTPVLDIKPYIGYCDAFPNVKAGWLDAL 1993
            +S + + VVRSPY+ERFGTPRQ  V    +    Q+G+I  +    YE AL+ L GFD  WV+  MHLN GWNP V PPR P  ++G+F+TR+PHRPN I+LS+L++ RVD  N +++V GLDLLDGTP+LDIKPY+ Y DAFPN  AGWLD +
Sbjct:   48 MSVQAIGVVRSPYKERFGTPRQATVWEQSIGNAPQDGEIHLIGDPRYEHALRGLDGFDYCWVICWMHLNTGWNPLVTPPRGPRTKQGIFATRAPHRPNPISLSALKITRVDYKNRIVHVKGLDLLDGTPILDIKPYVPYADAFPNAAAGWLDNI 201          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1949.6267.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LBB4_9PHAE0.000e+093.13TsaA-like domain-containing protein n=2 Tax=Ectoca... [more]
A0A835YNQ9_9STRA4.260e-6464.94TsaA-like domain-containing protein n=1 Tax=Tribon... [more]
A0A7S3XP01_HETAK6.210e-5858.14Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1WEL1_ALECA4.990e-5352.44Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
UPI001AD54E4C1.060e-5258.55tRNA (Adenine(37)-N6)-methyltransferase n=2 Tax=Pl... [more]
R1DL83_EMIHU5.380e-5249.50TsaA-like domain-containing protein n=1 Tax=Emilia... [more]
A0A0G4F040_VITBC5.670e-5254.14TsaA-like domain-containing protein n=2 Tax=Vitrel... [more]
A0A6N6JQK0_9BACT7.270e-5259.06tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyl... [more]
A0A7V8E2B3_9BACT7.270e-5258.44TsaA-like domain-containing protein n=1 Tax=Planct... [more]
A0A7S3A0C0_9RHOD9.020e-5255.84Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1949contigEcto-sp13_S_contig1949:7778..10938 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score1116.3
Seed ortholog evalue0.0
Seed eggNOG ortholog2880.D7FI01
Model size2554
Hectar predicted targeting categorysignal peptide
Exons3
EggNOG free text desc.tRNA (adenine-N6-)-methyltransferase activity
EggNOG OGsCOG1720@1,KOG2942@2759
Ec32 ortholog descriptionTsaA-like domain
Ec32 orthologEc-12_006540.1
Cds size1923
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462988.1439085-UTR-Ecto-sp13_S_contig1949:7777..79941681462988.1439085-UTR-Ecto-sp13_S_contig1949:7777..7994Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1949 7778..7994 +
1681462988.184246-UTR-Ecto-sp13_S_contig1949:10524..109381681462988.184246-UTR-Ecto-sp13_S_contig1949:10524..10938Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1949 10525..10938 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462988.1556573-CDS-Ecto-sp13_S_contig1949:7994..94501681462988.1556573-CDS-Ecto-sp13_S_contig1949:7994..9450Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1949 7995..9450 +
1681462988.1637013-CDS-Ecto-sp13_S_contig1949:9723..99601681462988.1637013-CDS-Ecto-sp13_S_contig1949:9723..9960Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1949 9724..9960 +
1681462988.1760983-CDS-Ecto-sp13_S_contig1949:10294..105241681462988.1760983-CDS-Ecto-sp13_S_contig1949:10294..10524Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1949 10295..10524 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1949.6267.1prot_Ecto-sp13_S_contig1949.6267.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1949 7995..10524 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1949.6267.1

>prot_Ecto-sp13_S_contig1949.6267.1 ID=prot_Ecto-sp13_S_contig1949.6267.1|Name=mRNA_Ecto-sp13_S_contig1949.6267.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=641bp
MGPTAAVIATNILALCSALAVGFAVGRFAGGGGKKETQQHPCSVRGAKRR
ARIKKSEDNSRAKAAGLASPPSEEEKRSNQVLSSRRTRSRKKKLGPRCLA
LDAWTRVARSYITSIGEGDYESLLLLPRACFIVAGRFVPYAECRDQLVSL
GQARAATAGVEQLRVLYVSCSWASAGGGEGKGWAVQDFETTRAYLQRNPD
LSFVYVGRSCVAGSSSSTGHVRSTQLRHVAPALLRSDAVLVLPRLAECAG
GGESSGSMGSRYTDFECSARGSRSRMVLAIAAVGQAKVFVAFRAGSYPES
VVELELGKGNVRATAKQAVDALRAAAAKRPQKSTAAVVKEACENWLGADL
NPLSALEQARAVVEEAQKSDDGEALENIRTMRPAPSFAANARAVLGDEFV
GGERELALSMLLFAVLCSQPKERATYTENFVQDVGKMEISYRPVAVVRSP
YRERFGTPRQPQVTASVLHGGAQEGQIVFLRGRGYEEALQDLSGFDMIWV
LTHMHLNKGWNPKVRPPRLPEERKGLFSTRSPHRPNAIALSSLRVGRVDA
ANGVIYVHGLDLLDGTPVLDIKPYIGYCDAFPNVKAGWLDALGSDHEGQG
NFLPKFSVGATLVHTDPGSKRSPTWTASRKPPATNQVEAS*
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mRNA from alignment at Ecto-sp13_S_contig1949:7778..10938+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1949.6267.1 ID=mRNA_Ecto-sp13_S_contig1949.6267.1|Name=mRNA_Ecto-sp13_S_contig1949.6267.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3161bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1949:7778..10938+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCACAACGACACAACTGTGTTGGGCACTTGAGACCTCGAATGCTCCTTT CTTCTGCGCAACGATTCTACCTTTGGTGCTTGCAGTATATGCATCAGCGT GTTTATGCTGATTACCTGAAGTTCGACACTCGACGCTGACGGCTGCGCAG CTGTAAGTGGATCCTGCGGACGGCGACCGCAGCACCGCAGGACATATATC TTCGTTGGTTACGGACAATGGGTCCTACCGCTGCCGTCATTGCTACCAAC ATTTTAGCACTGTGTTCGGCCTTGGCGGTTGGATTTGCGGTTGGGAGGTT CGCAGGTGGTGGGGGTAAGAAGGAAACCCAACAACACCCATGCAGCGTCA GGGGGGCCAAGCGCCGAGCACGGATTAAGAAGAGCGAGGACAACTCCAGG GCCAAAGCGGCCGGCCTCGCGTCGCCGCCATCGGAGGAAGAGAAACGAAG CAACCAAGTACTGTCGTCGCGTAGGACCCGTAGCCGCAAGAAAAAACTGG GGCCTCGGTGCCTCGCACTCGACGCCTGGACGAGGGTTGCCCGATCCTAC ATCACGAGTATCGGCGAAGGAGACTACGAGTCGCTTCTTCTCCTCCCACG GGCATGTTTCATCGTCGCCGGGCGGTTTGTGCCTTACGCCGAATGCCGCG ACCAACTTGTCTCTCTAGGTCAGGCGAGGGCGGCTACTGCCGGAGTCGAG CAGCTTCGTGTTCTCTACGTTAGCTGCTCGTGGGCAAGCGCTGGAGGCGG GGAAGGAAAGGGCTGGGCGGTGCAGGACTTCGAGACCACGCGCGCCTATC TTCAGCGCAACCCGGACCTCTCGTTCGTCTACGTGGGTAGGTCTTGCGTC GCGGGCAGCTCTTCTTCTACCGGACATGTAAGATCAACGCAGCTGCGCCA TGTTGCTCCAGCCCTCCTTCGGTCGGATGCCGTGCTTGTGCTTCCTCGCC TGGCGGAGTGCGCCGGTGGCGGGGAAAGCTCTGGATCTATGGGCTCAAGG TACACTGACTTTGAGTGTTCCGCCCGCGGTTCTCGGTCTCGAATGGTGCT TGCCATTGCTGCCGTCGGCCAGGCGAAGGTGTTCGTCGCTTTCCGCGCGG GGTCATACCCTGAATCCGTCGTTGAACTTGAGCTGGGGAAGGGCAACGTC AGGGCAACGGCGAAGCAAGCTGTGGATGCACTGAGGGCTGCGGCTGCGAA GAGGCCACAGAAGAGCACAGCGGCGGTAGTGAAGGAAGCATGTGAAAACT GGCTGGGCGCAGACCTGAACCCCCTTTCAGCTCTCGAGCAGGCCAGAGCG GTAGTGGAAGAGGCTCAGAAGTCGGACGATGGCGAAGCTCTGGAGAACAT CCGAACCATGCGACCAGCTCCATCCTTTGCGGCGAACGCGCGCGCGGTTC TCGGTGATGAGTTCGTTGGGGGAGAGCGCGAGCTTGCTCTCTCGATGCTC TTGTTTGCGGTGCTTTGTTCGCAGCCTAAGGAACGCGCCACCTACACGGA AAATTTCGTGCAAGACGTCGGTAAGATGGAAATATCATACCGCCCCGTGG CGGTGGTTAGGAGTCCCTACCGGGAGAGGTTTGGGACTCCGCGCCAACCG CAGGTGACCGCCTCTGTGCTACATGGGGGCGCTCAGGAGGGGCAGATCGT GTTTCTCCGAGGACGCGGTTATGGTGAGCACCCTGGCGATCCAAGAAAGT CTTCAAGTTCCTCGTCTGTCTGTAATTACCCCTGCAAGATTAAACAGCTG CTAGCGGTCGGTTGGGTGGTTTGCACGCCTGCACACTGCACCGCCTTTTC ATTTCTTGGCACATAGCCATCAAAAGGTAGACCCAACGTCTTTTGCTTCG TGGAGACACATCCTGCTTCCGTCTTGGAGTCTGGCACGTATTTTAAGCAA CTGCCCACGTTTCATCTCGTACATATGTGGGACGTTACACCGACAGAGGA AGCCCTGCAAGATTTAAGCGGTTTCGACATGATCTGGGTACTAACCCACA TGCACCTGAACAAAGGATGGAATCCCAAGGTCCGCCCCCCTCGGTTACCA GAGGAGAGAAAGGGCCTCTTCTCCACGCGAAGCCCACACAGACCTAACGC GATTGCGTTGTCGTCTCTTCGCGTGGGGCGGGTAGATGCCGCTAACGGTG TGATCTACGTCCACGGCCTGGACCTGCTCGACGGTAAGGGTAAACAAAGA GGAAGTATTGGAACCAATGATAATAATCAAGCGCATACGTATCCTGACGT GCACCACAACTTGTGAGCACTATATAGCTCTCAGCCGTTGATGGTGGTGT TTTGCTAGACTCTTGCAACTGAACAGCTCACAAAGCAGCACGTCCGTTTG TTACCGCTGGTGAAAGCCGTTACAAGAGAGGATCGTTGGATTTTGTCAAG ATCTGCGCTCCCACGAGTGCAACGTTGGTGTCGTGATTGTTGTTGTGTTT CGGTTTAAATGCGAGAGTGAGATAATTTTGAGGTTGTCACATCCTGGTGG CCCCGCTTCCTGGACAGGTACCCCGGTGCTGGACATCAAACCGTACATCG GCTACTGCGACGCCTTTCCCAACGTGAAAGCCGGGTGGCTGGATGCTCTT GGCTCGGATCACGAAGGACAGGGGAACTTCTTGCCGAAGTTCAGTGTCGG CGCTACGCTGGTTCACACCGATCCTGGCTCTAAACGTTCTCCCACCTGGA CAGCATCGAGGAAACCACCCGCGACCAACCAAGTGGAGGCCTCGTAGAGA CAATATTGCTCGATGGTAGCGGGTGGTGGAATGAAAAGAGTTGCTCCAAC CCCAAATAGATGGGGAGGAATCCTTTTGTGTGACCACAGGTGGCATTAAA ACGGCACAAGTTCTGTGAGCGCTGACTTGAATTGTGAAGACAATATTAAT AGGAGTACACATCGTTACGAGTACCGGGACGAAATCCCGACGGAATCCTG AGAGAGGGGGCTTACCACGTGTTTGTTCCTCTGGCGACATCATGCCGTGC ACACAAGAATAATAGAGTCCTCGTACAAAACGCGGGAAGCATTTTCCCCA ATGATTTCTTAAGCTACAGTCACTTGTTTACCGGCCAATGAGCTCACGCC ACGTAATCAATTGGCGCATGTGTGACTAGAGGGAGCCGTCCTCGATAGGC GTTGGGGAATA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1949:7778..10938+

>mRNA_Ecto-sp13_S_contig1949.6267.1 ID=mRNA_Ecto-sp13_S_contig1949.6267.1|Name=mRNA_Ecto-sp13_S_contig1949.6267.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1923bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1949:7778..10938+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGTCCTACCGCTGCCGTCATTGCTACCAACATTTTAGCACTGTGTTC
GGCCTTGGCGGTTGGATTTGCGGTTGGGAGGTTCGCAGGTGGTGGGGGTA
AGAAGGAAACCCAACAACACCCATGCAGCGTCAGGGGGGCCAAGCGCCGA
GCACGGATTAAGAAGAGCGAGGACAACTCCAGGGCCAAAGCGGCCGGCCT
CGCGTCGCCGCCATCGGAGGAAGAGAAACGAAGCAACCAAGTACTGTCGT
CGCGTAGGACCCGTAGCCGCAAGAAAAAACTGGGGCCTCGGTGCCTCGCA
CTCGACGCCTGGACGAGGGTTGCCCGATCCTACATCACGAGTATCGGCGA
AGGAGACTACGAGTCGCTTCTTCTCCTCCCACGGGCATGTTTCATCGTCG
CCGGGCGGTTTGTGCCTTACGCCGAATGCCGCGACCAACTTGTCTCTCTA
GGTCAGGCGAGGGCGGCTACTGCCGGAGTCGAGCAGCTTCGTGTTCTCTA
CGTTAGCTGCTCGTGGGCAAGCGCTGGAGGCGGGGAAGGAAAGGGCTGGG
CGGTGCAGGACTTCGAGACCACGCGCGCCTATCTTCAGCGCAACCCGGAC
CTCTCGTTCGTCTACGTGGGTAGGTCTTGCGTCGCGGGCAGCTCTTCTTC
TACCGGACATGTAAGATCAACGCAGCTGCGCCATGTTGCTCCAGCCCTCC
TTCGGTCGGATGCCGTGCTTGTGCTTCCTCGCCTGGCGGAGTGCGCCGGT
GGCGGGGAAAGCTCTGGATCTATGGGCTCAAGGTACACTGACTTTGAGTG
TTCCGCCCGCGGTTCTCGGTCTCGAATGGTGCTTGCCATTGCTGCCGTCG
GCCAGGCGAAGGTGTTCGTCGCTTTCCGCGCGGGGTCATACCCTGAATCC
GTCGTTGAACTTGAGCTGGGGAAGGGCAACGTCAGGGCAACGGCGAAGCA
AGCTGTGGATGCACTGAGGGCTGCGGCTGCGAAGAGGCCACAGAAGAGCA
CAGCGGCGGTAGTGAAGGAAGCATGTGAAAACTGGCTGGGCGCAGACCTG
AACCCCCTTTCAGCTCTCGAGCAGGCCAGAGCGGTAGTGGAAGAGGCTCA
GAAGTCGGACGATGGCGAAGCTCTGGAGAACATCCGAACCATGCGACCAG
CTCCATCCTTTGCGGCGAACGCGCGCGCGGTTCTCGGTGATGAGTTCGTT
GGGGGAGAGCGCGAGCTTGCTCTCTCGATGCTCTTGTTTGCGGTGCTTTG
TTCGCAGCCTAAGGAACGCGCCACCTACACGGAAAATTTCGTGCAAGACG
TCGGTAAGATGGAAATATCATACCGCCCCGTGGCGGTGGTTAGGAGTCCC
TACCGGGAGAGGTTTGGGACTCCGCGCCAACCGCAGGTGACCGCCTCTGT
GCTACATGGGGGCGCTCAGGAGGGGCAGATCGTGTTTCTCCGAGGACGCG
GTTATGAGGAAGCCCTGCAAGATTTAAGCGGTTTCGACATGATCTGGGTA
CTAACCCACATGCACCTGAACAAAGGATGGAATCCCAAGGTCCGCCCCCC
TCGGTTACCAGAGGAGAGAAAGGGCCTCTTCTCCACGCGAAGCCCACACA
GACCTAACGCGATTGCGTTGTCGTCTCTTCGCGTGGGGCGGGTAGATGCC
GCTAACGGTGTGATCTACGTCCACGGCCTGGACCTGCTCGACGGTACCCC
GGTGCTGGACATCAAACCGTACATCGGCTACTGCGACGCCTTTCCCAACG
TGAAAGCCGGGTGGCTGGATGCTCTTGGCTCGGATCACGAAGGACAGGGG
AACTTCTTGCCGAAGTTCAGTGTCGGCGCTACGCTGGTTCACACCGATCC
TGGCTCTAAACGTTCTCCCACCTGGACAGCATCGAGGAAACCACCCGCGA
CCAACCAAGTGGAGGCCTCGTAG
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