mRNA_Ecto-sp13_S_contig19477.6259.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19477.6259.1
Unique NamemRNA_Ecto-sp13_S_contig19477.6259.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig19477.6259.1 vs. uniprot
Match: D7FPK8_ECTSI (Putative membrane transporter (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPK8_ECTSI)

HSP 1 Score: 244 bits (624), Expect = 2.190e-77
Identity = 122/127 (96.06%), Postives = 124/127 (97.64%), Query Frame = 1
Query:    1 ASYFTHKVADSQPATGCVLVLGMLVFAGLFAVNSSVHSYLIVSYSNKDKVAMDLGFYYMANAMGRLIGVLVGGFLYHYTSDDFGLSMCLVVACPFLVAAAAISYHLPGPATPPSSTTPDIELKAAGA 381
            ASYFTHKVADSQ ATGCVLVLGMLVFAGLFAVNSSVHSYLIVSYSNKDKVAMDLGFYYMANAMGRLIGVLVGGFLYHYTSDDFGLSMCLVVACPFLVAA+AI+Y LPGPATPPS TTPDIELKAAGA
Sbjct:  334 ASYFTHKVADSQLATGCVLVLGMLVFAGLFAVNSSVHSYLIVSYSNKDKVAMDLGFYYMANAMGRLIGVLVGGFLYHYTSDDFGLSMCLVVACPFLVAASAIAYRLPGPATPPSPTTPDIELKAAGA 460          
BLAST of mRNA_Ecto-sp13_S_contig19477.6259.1 vs. uniprot
Match: A0A6H5KIX3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIX3_9PHAE)

HSP 1 Score: 202 bits (513), Expect = 4.610e-61
Identity = 100/104 (96.15%), Postives = 101/104 (97.12%), Query Frame = 1
Query:   70 LVFAGLFAVNSSVHSYLIVSYSNKDKVAMDLGFYYMANAMGRLIGVLVGGFLYHYTSDDFGLSMCLVVACPFLVAAAAISYHLPGPATPPSSTTPDIELKAAGA 381
            L+ AGLFAVNSSVHSYLIVSYSNKDKVAMDLGFYYMANAMGRLIGVLVGGFLYHYTSDDFGLSMCLVVACPFLVAAAAISYHLPGPATPPS TTPDIE KAAGA
Sbjct:  328 LIMAGLFAVNSSVHSYLIVSYSNKDKVAMDLGFYYMANAMGRLIGVLVGGFLYHYTSDDFGLSMCLVVACPFLVAAAAISYHLPGPATPPSPTTPDIEFKAAGA 431          
BLAST of mRNA_Ecto-sp13_S_contig19477.6259.1 vs. uniprot
Match: A0A836CH56_9STRA (Putative membrane transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH56_9STRA)

HSP 1 Score: 133 bits (335), Expect = 2.950e-34
Identity = 68/118 (57.63%), Postives = 87/118 (73.73%), Query Frame = 1
Query:    7 YFTHKVAD--SQPATGCVLVLGMLVFAGLFAVNSSVHSYLIVSYSNKDKVAMDLGFYYMANAMGRLIGVLVGGFLYHYTSDDFGLSMCLVVACPFLVAAAAISYHLPGPATPPSSTTP 354
            Y T++V D  S  A+  VLVLG+ +FA +FAVNS++HSYLIVSYS+KDKV+MDLGFYYM+NA+GRL+GVL+GG +Y YT D+FGLS+ L +A PFL+ A  I   L G    P    P
Sbjct:  350 YITYEVVDTGSNVASTVVLVLGLTLFAAVFAVNSAIHSYLIVSYSDKDKVSMDLGFYYMSNALGRLVGVLLGGVVYQYTVDEFGLSVVLWIAAPFLMFAGVIGSFLKGARLGPKLPVP 467          
BLAST of mRNA_Ecto-sp13_S_contig19477.6259.1 vs. uniprot
Match: A0A430KVB4_9GAMM (MFS transporter n=2 Tax=Amphritea TaxID=515417 RepID=A0A430KVB4_9GAMM)

HSP 1 Score: 111 bits (278), Expect = 1.280e-26
Identity = 59/100 (59.00%), Postives = 75/100 (75.00%), Query Frame = 1
Query:   52 VLVLGMLVFAGLFAVNSSVHSYLIVSYSNKDKVAMDLGFYYMANAMGRLIGVLVGGFLYHYTSDDFGLSMCLVVACPFLVAAAAISYHLPGPATPPSSTT 351
            VL+ G+L+F  LFAVNSS+HSYLIVSY+ +D V++D+GFYYMANAMGRLIG L+ G+LY     DFGL+ CL VA  F++  A IS  LP   TP ++TT
Sbjct:  315 VLIGGLLIFGALFAVNSSLHSYLIVSYAGEDGVSLDVGFYYMANAMGRLIGTLLSGWLY----QDFGLAACLWVATLFILITALISLGLPKHQTPVAATT 410          
BLAST of mRNA_Ecto-sp13_S_contig19477.6259.1 vs. uniprot
Match: A0A7S2WN85_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WN85_9STRA)

HSP 1 Score: 112 bits (280), Expect = 1.610e-26
Identity = 53/105 (50.48%), Postives = 76/105 (72.38%), Query Frame = 1
Query:    4 SYFTHKVADSQPATGCVLVLGMLVFAGLFAVNSSVHSYLIVSYSNKDKVAMDLGFYYMANAMGRLIGVLVGGFLYHYTSDDFGLSMCLVVACPFLVAAAAISYHL 318
            SY      +++ A+  VL++G+ V+A  FA NS++HSYLIV Y+ KDK+ MD+GFYYMANAMGRL+G ++ G +Y +T + FGLSMC+ VA  F++ AA  S +L
Sbjct:  397 SYRNLVSTNNRIASATVLLIGLFVYAFFFATNSAIHSYLIVLYAGKDKLTMDMGFYYMANAMGRLVGTILSGVIYQFTVEYFGLSMCMWVAAVFMLLAAISSRYL 501          
BLAST of mRNA_Ecto-sp13_S_contig19477.6259.1 vs. uniprot
Match: A0A4P6P6H6_9GAMM (MFS transporter n=1 Tax=Litorilituus sediminis TaxID=718192 RepID=A0A4P6P6H6_9GAMM)

HSP 1 Score: 109 bits (273), Expect = 6.360e-26
Identity = 52/89 (58.43%), Postives = 70/89 (78.65%), Query Frame = 1
Query:   55 LVLGMLVFAGLFAVNSSVHSYLIVSYSNKDKVAMDLGFYYMANAMGRLIGVLVGGFLYHYTSDDFGLSMCLVVACPFLVAAAAISYHLP 321
            L++G+L+F  +FAVNSS+HSYLIVSY+ +D V++D+GFYYMANAMGRLIG ++ GFLY      +GL+ CL V+C F+  AAA+S  LP
Sbjct:  318 LIVGLLIFGAVFAVNSSLHSYLIVSYAGRDGVSLDVGFYYMANAMGRLIGTVLSGFLY----QQYGLATCLWVSCAFIALAAALSIKLP 402          
BLAST of mRNA_Ecto-sp13_S_contig19477.6259.1 vs. uniprot
Match: A0A836CEU1_9STRA (Putative membrane transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEU1_9STRA)

HSP 1 Score: 110 bits (274), Expect = 6.470e-26
Identity = 52/95 (54.74%), Postives = 73/95 (76.84%), Query Frame = 1
Query:    1 ASYFTHKVADSQPATGCVLVL--GMLVFAGLFAVNSSVHSYLIVSYSNKDKVAMDLGFYYMANAMGRLIGVLVGGFLYHYTSDDFGLSMCLVVAC 279
            A YFT+   D       ++VL  G+L F+ +FAVNS++HSYLIVS+S++DKV+ D+GFYYM+NA GRL+GVL+GG +Y Y+ D++GLSM + VAC
Sbjct:  329 ALYFTYDAHDPTDNVASIVVLCAGILAFSAVFAVNSAIHSYLIVSFSDQDKVSQDVGFYYMSNAGGRLVGVLLGGIVYQYSVDEYGLSMHVTVAC 423          
BLAST of mRNA_Ecto-sp13_S_contig19477.6259.1 vs. uniprot
Match: A0A090T8W0_9VIBR (Permease of the major facilitator superfamily n=1 Tax=Vibrio maritimus TaxID=990268 RepID=A0A090T8W0_9VIBR)

HSP 1 Score: 99.8 bits (247), Expect = 6.950e-25
Identity = 50/91 (54.95%), Postives = 67/91 (73.63%), Query Frame = 1
Query:   52 VLVLGMLVFAGLFAVNSSVHSYLIVSYSNKDKVAMDLGFYYMANAMGRLIGVLVGGFLYHYTSDDFGLSMCLVVACPFLVAAAAISYHLPG 324
            V+V+G+L+F  +FAVNSS+HSYLIVSY+  D V+MD+GFYYMANAMGRLIG ++ G+++       GL+ C+ V+  FLV    IS  LPG
Sbjct:    2 VIVVGLLIFGAIFAVNSSLHSYLIVSYAKGDGVSMDVGFYYMANAMGRLIGTVLSGWVFQVA----GLAACMWVSFAFLVLTTIISIRLPG 88          
BLAST of mRNA_Ecto-sp13_S_contig19477.6259.1 vs. uniprot
Match: A0A1Y5E5R4_9PROT (MFS transporter n=1 Tax=Alphaproteobacteria bacterium 46_93_T64 TaxID=1856292 RepID=A0A1Y5E5R4_9PROT)

HSP 1 Score: 106 bits (265), Expect = 9.270e-25
Identity = 52/97 (53.61%), Postives = 75/97 (77.32%), Query Frame = 1
Query:   55 LVLGMLVFAGLFAVNSSVHSYLIVSYSNKDKVAMDLGFYYMANAMGRLIGVLVGGFLYHYTSDDFGLSMCLVVACPFLVAAAAISYHLPGPATPPSS 345
            L++G+L+F  LFAVNSS+HSYLI+SY+N+D V++D+GFYYMANA+GRLIG ++ G+++      +GLS CL+++  FL  +AAISY LP    PP +
Sbjct:  315 LLVGLLIFGALFAVNSSLHSYLIISYANRDSVSLDVGFYYMANALGRLIGTVLSGWVFQM----WGLSACLIISGFFLTLSAAISYFLPQFKHPPKA 407          
BLAST of mRNA_Ecto-sp13_S_contig19477.6259.1 vs. uniprot
Match: F3LIY4_9GAMM (Putative transporter n=1 Tax=gamma proteobacterium IMCC1989 TaxID=937772 RepID=F3LIY4_9GAMM)

HSP 1 Score: 103 bits (257), Expect = 1.100e-24
Identity = 45/103 (43.69%), Postives = 74/103 (71.84%), Query Frame = 1
Query:   13 THKVADSQPATGCVLVLGMLVFAGLFAVNSSVHSYLIVSYSNKDKVAMDLGFYYMANAMGRLIGVLVGGFLYHYTSDDFGLSMCLVVACPFLVAAAAISYHLP 321
            T  V    P +  ++++G+ +F G+FA+NSS+HSYLIV+Y+ +D  ++D+GFYYMANA GRL+G+++ G++Y Y    +GL+ CL+V+  F+ A   +S+ LP
Sbjct:  141 TACVVHWLPLSSALIIVGLFIFGGVFAINSSIHSYLIVAYAREDHASLDVGFYYMANAAGRLVGIILSGWIYQY----YGLATCLIVSGAFVFATLIVSHLLP 239          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19477.6259.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPK8_ECTSI2.190e-7796.06Putative membrane transporter (ISS) n=1 Tax=Ectoca... [more]
A0A6H5KIX3_9PHAE4.610e-6196.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CH56_9STRA2.950e-3457.63Putative membrane transporter n=1 Tax=Tribonema mi... [more]
A0A430KVB4_9GAMM1.280e-2659.00MFS transporter n=2 Tax=Amphritea TaxID=515417 Rep... [more]
A0A7S2WN85_9STRA1.610e-2650.48Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A4P6P6H6_9GAMM6.360e-2658.43MFS transporter n=1 Tax=Litorilituus sediminis Tax... [more]
A0A836CEU1_9STRA6.470e-2654.74Putative membrane transporter n=1 Tax=Tribonema mi... [more]
A0A090T8W0_9VIBR6.950e-2554.95Permease of the major facilitator superfamily n=1 ... [more]
A0A1Y5E5R4_9PROT9.270e-2553.61MFS transporter n=1 Tax=Alphaproteobacteria bacter... [more]
F3LIY4_9GAMM1.100e-2443.69Putative transporter n=1 Tax=gamma proteobacterium... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19477contigEcto-sp13_S_contig19477:1788..2969 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score244.2
Seed ortholog evalue3.3e-62
Seed eggNOG ortholog2880.D7FPK8
Model size384
Hectar predicted targeting categorysignal peptide
Exons3
EggNOG free text desc.Major Facilitator
EggNOG OGs2CMXH@1,2QSJF@2759
Cds size384
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462987.625611-CDS-Ecto-sp13_S_contig19477:1787..19341681462987.625611-CDS-Ecto-sp13_S_contig19477:1787..1934Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19477 1788..1934 -
1681462987.6385179-CDS-Ecto-sp13_S_contig19477:2318..24141681462987.6385179-CDS-Ecto-sp13_S_contig19477:2318..2414Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19477 2319..2414 -
1681462987.6487885-CDS-Ecto-sp13_S_contig19477:2828..29691681462987.6487885-CDS-Ecto-sp13_S_contig19477:2828..2969Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19477 2829..2969 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19477.6259.1prot_Ecto-sp13_S_contig19477.6259.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19477 1788..2969 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19477.6259.1

>prot_Ecto-sp13_S_contig19477.6259.1 ID=prot_Ecto-sp13_S_contig19477.6259.1|Name=mRNA_Ecto-sp13_S_contig19477.6259.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=128bp
ASYFTHKVADSQPATGCVLVLGMLVFAGLFAVNSSVHSYLIVSYSNKDKV
AMDLGFYYMANAMGRLIGVLVGGFLYHYTSDDFGLSMCLVVACPFLVAAA
AISYHLPGPATPPSSTTPDIELKAAGA*
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mRNA from alignment at Ecto-sp13_S_contig19477:1788..2969-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19477.6259.1 ID=mRNA_Ecto-sp13_S_contig19477.6259.1|Name=mRNA_Ecto-sp13_S_contig19477.6259.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1182bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19477:1788..2969- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGTCTTATTTCACGCACAAGGTGGCGGACAGCCAGCCGGCGACTGGCTG CGTCCTCGTCCTCGGGATGTTGGTCTTCGCAGGCCTGTTCGCCGTCAACT CGTCGGTGCACTCCTACTTGATCGTCAGCTACTCCAACAAGGTGGCCAAC GAAGAGATGTTTTGTCCTGCCTGCCGTGAAATCCCAAAATTCGTGTAGAG TAGGGGGGGGCATCCCTTGCATACTTGGTTGCTCGCGAAAACGGATTGTC ACTCAACCGAATAGGGTGGGATCGTGCAACATTAAAGCTCCGTTGAATAT GGTCACATACTGTCCACTCGATAGGGTAGGATCGTGCAACATTGAAGCCT CGTTAAATATGGTTGCATGATGTCACTCTACACAATAGGGTTGGATCGCG CAACATTGAAGCCCCGTTGAACATGATTACATACTCACGCCTCACTCAAA GGGTCGTCTCGCTCAAACATCGAAACCCTTCGAAATAGTCACATGTCGCG AGGGGACCCCGGGGAATCCTTTTGACCACCCGAGGCCGTTTCCCCGCGCC TGCAGGACAAGGTCGCCATGGACCTTGGGTTCTACTACATGGCCAACGCC ATGGGCAGGCTCATCGGTGTCCTCGTGGGCGGCTTCCTCTACCACTACAC GGTGAGATCGCCTCGTAACTTCTGGACGACAGCTGCCGGTGCTCTTTCTC GTTCACCGGCTGTCTTGATCTTAGGACTGGCAGGTGGCGCTGCTTATATC GGAAGCACAGGAGTGCCTTGGAACACACGTGGGTGTGTGGTTTAGTTTGC CACCGGGCTCTCACCTCATCTTCTGGGTCGTACCGCTGTCGGCAAAGAGG GGCGGTATCGAAACGCATTTGTTAGCGTTAACGCTGCTGTGCCGCGCTGT GTTCCGAAGAGGTACTGTACGATGTCTCCTCCCCAGCAATTACTCTTGCA CCTCACCACTGCCTCTCGCCTTAATCCCTCTCTCTTCGCGTTTCATTTTG CCCCGGGCGGTGTTCCTGCCTGGTTCCATCTGCAGTCGGATGACTTCGGG CTGTCCATGTGCCTGGTGGTAGCCTGCCCTTTCCTCGTGGCCGCTGCGGC GATCTCCTACCACCTCCCCGGCCCGGCCACGCCTCCGTCTTCAACAACCC CGGACATCGAGCTCAAAGCAGCGGGAGCGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19477:1788..2969-

>mRNA_Ecto-sp13_S_contig19477.6259.1 ID=mRNA_Ecto-sp13_S_contig19477.6259.1|Name=mRNA_Ecto-sp13_S_contig19477.6259.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=384bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19477:1788..2969- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGTCTTATTTCACGCACAAGGTGGCGGACAGCCAGCCGGCGACTGGCTG
CGTCCTCGTCCTCGGGATGTTGGTCTTCGCAGGCCTGTTCGCCGTCAACT
CGTCGGTGCACTCCTACTTGATCGTCAGCTACTCCAACAAGGACAAGGTC
GCCATGGACCTTGGGTTCTACTACATGGCCAACGCCATGGGCAGGCTCAT
CGGTGTCCTCGTGGGCGGCTTCCTCTACCACTACACGTCGGATGACTTCG
GGCTGTCCATGTGCCTGGTGGTAGCCTGCCCTTTCCTCGTGGCCGCTGCG
GCGATCTCCTACCACCTCCCCGGCCCGGCCACGCCTCCGTCTTCAACAAC
CCCGGACATCGAGCTCAAAGCAGCGGGAGCGTGA
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