mRNA_Ecto-sp13_S_contig19456.6253.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19456.6253.1
Unique NamemRNA_Ecto-sp13_S_contig19456.6253.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig19456.6253.1 vs. uniprot
Match: D7FMQ9_ECTSI (Aquarius intron-binding protein similar to aquarius n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMQ9_ECTSI)

HSP 1 Score: 219 bits (559), Expect = 9.270e-64
Identity = 112/124 (90.32%), Postives = 113/124 (91.13%), Query Frame = 1
Query:   28 LPHLLFSLLTPLRNPYRSFNLFRLESAYEIRGDLVDAIRRTNPRRDPTRGGATRFEGWARMATPISGVSITEVKKPNLGEKVPAEVLSEVSLNLAHFDRMHMREEWDTLREHDVVFLVSIQSPH 399
            LP L    LT      RSFNLFRLESAYEIRGDLVDAIRRTNPRRDPTRGGATRFEGWARMATPISGVSITEVKKPNLGEKVPAEVLSEV+LNLAHFDRMHMREEWDTLREHDVVFLVSIQSPH
Sbjct: 1014 LPKLNLQFLTSHDYLLRSFNLFRLESAYEIRGDLVDAIRRTNPRRDPTRGGATRFEGWARMATPISGVSITEVKKPNLGEKVPAEVLSEVTLNLAHFDRMHMREEWDTLREHDVVFLVSIQSPH 1137          
BLAST of mRNA_Ecto-sp13_S_contig19456.6253.1 vs. uniprot
Match: A0A7S3GMN5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GMN5_9STRA)

HSP 1 Score: 117 bits (294), Expect = 4.460e-28
Identity = 61/108 (56.48%), Postives = 76/108 (70.37%), Query Frame = 1
Query:   76 RSFNLFRLESAYEIRGDLVDAIRRTNPRRDPTRGGATRFEGWARMATPISGVSITEVKKPNLGEKVPAEVLSEVSLNLAHFDRMHMREEWDTLREHDVVFLVSIQSPH 399
            R+F LFRLESAYEIR DL DAI+R  P+      GA  F GWARMA PI  VS+ EV KP LGE VP  V   V+++++ +    MR+EW++ REHDVVFLV+IQ+PH
Sbjct:  574 RNFTLFRLESAYEIRDDLTDAIKRMGPKAGLR--GAVNFGGWARMAVPIVSVSVDEVTKPKLGELVPRNVDCTVTIDISRYSG-DMRQEWESFREHDVVFLVAIQAPH 678          
BLAST of mRNA_Ecto-sp13_S_contig19456.6253.1 vs. uniprot
Match: W7TJX7_9STRA (Intron-binding protein aquarius n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJX7_9STRA)

HSP 1 Score: 115 bits (288), Expect = 2.860e-27
Identity = 65/131 (49.62%), Postives = 79/131 (60.31%), Query Frame = 1
Query:   28 LPHLLFSLLTPLRNPYRSFNLFRLESAYEIRGDLVDAIRRTNPRRDPTRGGATRFEGWARMATPIS--------GVSITEVKKPNLGEKVPAEVLSEVSLNLAHFDRMHMREEWDTLREHDVVFLVSIQSP 396
            LP L    LT +    RS+ LFR+ESAYEIR DL+  +R   P R     G   F GWARM  P+         GV ITEV KPNLGE+VPA V +E++++L        REEWD LREHDVVFLV I++P
Sbjct:  145 LPKLNLQFLTFVDYLLRSYTLFRVESAYEIRADLMTTLRYLQPVRQEGPEGGVAFRGWARMGVPLRKGGKDGGRGVVITEVLKPNLGERVPAGVKAEITVDLREXXXXXXREEWDLLREHDVVFLVRIENP 275          
BLAST of mRNA_Ecto-sp13_S_contig19456.6253.1 vs. uniprot
Match: A0A4D9CVZ4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CVZ4_9STRA)

HSP 1 Score: 115 bits (287), Expect = 3.990e-27
Identity = 64/131 (48.85%), Postives = 79/131 (60.31%), Query Frame = 1
Query:   28 LPHLLFSLLTPLRNPYRSFNLFRLESAYEIRGDLVDAIRRTNPRRDPTRGGATRFEGWARMATPIS--------GVSITEVKKPNLGEKVPAEVLSEVSLNLAHFDRMHMREEWDTLREHDVVFLVSIQSP 396
            LP L    LT +    RS+ LFR+ESAYEIR DL+  +R   P R     G   F GWARM  P+         GV ITEV KPNLGE++PA V +E++++L        REEWD LREHDVVFLV I++P
Sbjct:  744 LPKLNLQFLTFVDYLLRSYTLFRVESAYEIRADLMTTLRYLQPVRQEGPEGGVAFRGWARMGVPLRKGGKDGGRGVVITEVLKPNLGERIPAGVKAEITVDLREXXXXXXREEWDLLREHDVVFLVRIENP 874          
BLAST of mRNA_Ecto-sp13_S_contig19456.6253.1 vs. uniprot
Match: A0A1Y1WSV3_9FUNG (Aquarius_N domain-containing protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1WSV3_9FUNG)

HSP 1 Score: 113 bits (283), Expect = 1.240e-26
Identity = 62/124 (50.00%), Postives = 86/124 (69.35%), Query Frame = 1
Query:   25 PLPHLLFSLLTPLRNPYRSFNLFRLESAYEIRGDLVDAIRRTNPRRD-PTRGGATRFEGWARMATPISGVSITEVKKPNLGEKVPAEVLSEVSLNLAHFDRMHMREEWDTLREHDVVFLVSIQS 393
            PLP L    LT      R+FNLFRLESAYEIR D+ DA++R  P+   P R   T F GWARMA PI   SI +V+KPNLGEK PA+V ++V+ N++ +    +R+EW +LR+HD++FL+++Q+
Sbjct:  382 PLPKLNLQFLTIHDYLLRNFNLFRLESAYEIRQDIEDAVKRLAPKLIFPER--TTEFTGWARMAIPIETFSIVDVEKPNLGEKKPAKVAADVTFNISRYTPS-IRDEWSSLRQHDILFLLTLQA 502          
BLAST of mRNA_Ecto-sp13_S_contig19456.6253.1 vs. uniprot
Match: A0A1Y1YIH7_9FUNG (Pre-mRNA-splicing factor n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YIH7_9FUNG)

HSP 1 Score: 113 bits (283), Expect = 1.360e-26
Identity = 62/124 (50.00%), Postives = 86/124 (69.35%), Query Frame = 1
Query:   25 PLPHLLFSLLTPLRNPYRSFNLFRLESAYEIRGDLVDAIRRTNPRRD-PTRGGATRFEGWARMATPISGVSITEVKKPNLGEKVPAEVLSEVSLNLAHFDRMHMREEWDTLREHDVVFLVSIQS 393
            PLP L    LT      R+FNLFRLESAYEIR D+ DA++R  P+   P R   T F GWARMA PI   SI +V+KPNLGEK PA+V ++V+ N++ +    +R+EW +LR+HD++FL+++Q+
Sbjct:  358 PLPKLNLQFLTIHDYLLRNFNLFRLESAYEIRQDIEDAVKRLAPKLIFPER--TTEFTGWARMAIPIETFSIVDVEKPNLGEKKPAKVAADVTFNISRYTPS-IRDEWSSLRQHDILFLLTLQA 478          
BLAST of mRNA_Ecto-sp13_S_contig19456.6253.1 vs. uniprot
Match: A0A7S1T1J6_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T1J6_9CHLO)

HSP 1 Score: 104 bits (260), Expect = 4.680e-26
Identity = 58/123 (47.15%), Postives = 76/123 (61.79%), Query Frame = 1
Query:   28 LPHLLFSLLTPLRNPYRSFNLFRLESAYEIRGDLVDAIRRTNPRRDPTRGGATRFEGWARMATPISGVSITEVKKPNLGEKVPAEVLSEVSLNLAHFDRMHMREEWDTLREHDVVFLVSIQSP 396
            LP L    LT      R+FNLFRLE+ YEIR DL D + R   R D    G   F GW+RMA P+   +I EVKKP++G+  PA V ++V +N   F R  +R EWD L+EHDV+FL++I+ P
Sbjct:   11 LPKLNLQFLTAHDYLLRNFNLFRLEATYEIREDLSDVLARVGARTDDD-SGKVNFTGWSRMAIPLHHFTIVEVKKPDVGQNKPAAVTADVMVN-TKFLRGDVRSEWDELKEHDVLFLLTIRPP 131          
BLAST of mRNA_Ecto-sp13_S_contig19456.6253.1 vs. uniprot
Match: A0A813LL34_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813LL34_POLGL)

HSP 1 Score: 109 bits (272), Expect = 4.120e-25
Identity = 63/123 (51.22%), Postives = 78/123 (63.41%), Query Frame = 1
Query:   28 LPHLLFSLLTPLRNPYRSFNLFRLESAYEIRGDLVDAIRRTNPRRDPTRGGATRFEGWARMATPISGVSITEVKKPNLGEKVPAEVLSEVSLNLAHFDRMHMREEWDTLREHDVVFLVSIQSP 396
            LP L    LT      R+FNLFRLES YEIR DL D I R  P RD    G T F G ARMA P+  + +  VK+P +GE+VPAEV +EV  +L      ++R+EWDTLREHDV+FL+ I +P
Sbjct:  705 LPKLNLQFLTIHDYLLRNFNLFRLESTYEIREDLQDQIPRMKPSRDED--GNTHFSGKARMALPLGALEVMNVKRPKVGEEVPAEVRAEVRWSLMGA-MSNVRQEWDTLREHDVIFLLRIDAP 824          
BLAST of mRNA_Ecto-sp13_S_contig19456.6253.1 vs. uniprot
Match: A0A7S3Z5T7_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z5T7_9EUKA)

HSP 1 Score: 108 bits (271), Expect = 5.610e-25
Identity = 57/124 (45.97%), Postives = 83/124 (66.94%), Query Frame = 1
Query:   28 LPHLLFSLLTPLRNPYRSFNLFRLESAYEIRGDLVDAIRRTNPRRDPTRGGATRFEGWARMATPISGVSITEVKKPNLGEKVPAEVLSEVSLNLAHFDRMHMREEWDTLREHDVVFLVSIQSPH 399
            LP L    LT      R+FNLFRLES YEIR D+ + + R  PR      G T F GWA+MA PI   +IT+VKKPN+GE  PA+V +E++++LA F +  +R++W+ +REHDV+FL+ +++ +
Sbjct:  103 LPKLNLQFLTIYDYLLRNFNLFRLESTYEIREDIKNVVHRLKPR--IAGNGDTVFTGWAKMAVPIKTFTITKVKKPNIGEIKPAQVAAEITVDLAPF-QSRVRQDWEAIREHDVLFLLCVEAKY 223          
BLAST of mRNA_Ecto-sp13_S_contig19456.6253.1 vs. uniprot
Match: A0A8J5G5W7_ZINOF (Uncharacterized protein n=4 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5G5W7_ZINOF)

HSP 1 Score: 108 bits (270), Expect = 7.720e-25
Identity = 61/121 (50.41%), Postives = 80/121 (66.12%), Query Frame = 1
Query:   28 LPHLLFSLLTPLRNPYRSFNLFRLESAYEIRGDLVDAIRRTNPRRDPTRGGATRFEGWARMATPISGVSITEVKKPNLGEKVPAEVLSEVSLNLAHFDRMHMREEWDTLREHDVVFLVSIQ 390
            LP L    LT      R+FNLFRLES YEIR D+ +A+   +      R G T F GW+RMA PI    ITEVK+PN+GE  PA V +EV+ ++A + R H+R EWD+L+EHDV+FL+SI+
Sbjct:  512 LPKLNLQFLTLHDYLLRNFNLFRLESTYEIREDIQEAV--PHLLAYINREGETAFGGWSRMAVPIKQFKITEVKQPNIGEVKPASVTAEVTYSIASY-RAHIRSEWDSLKEHDVLFLLSIR 629          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19456.6253.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMQ9_ECTSI9.270e-6490.32Aquarius intron-binding protein similar to aquariu... [more]
A0A7S3GMN5_9STRA4.460e-2856.48Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
W7TJX7_9STRA2.860e-2749.62Intron-binding protein aquarius n=1 Tax=Nannochlor... [more]
A0A4D9CVZ4_9STRA3.990e-2748.85Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A1Y1WSV3_9FUNG1.240e-2650.00Aquarius_N domain-containing protein n=1 Tax=Basid... [more]
A0A1Y1YIH7_9FUNG1.360e-2650.00Pre-mRNA-splicing factor n=1 Tax=Basidiobolus meri... [more]
A0A7S1T1J6_9CHLO4.680e-2647.15Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
A0A813LL34_POLGL4.120e-2551.22Hypothetical protein (Fragment) n=1 Tax=Polarella ... [more]
A0A7S3Z5T7_9EUKA5.610e-2545.97Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A8J5G5W7_ZINOF7.720e-2550.41Uncharacterized protein n=4 Tax=Zingiber officinal... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19456contigEcto-sp13_S_contig19456:370..1264 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score221.5
Seed ortholog evalue2.4e-55
Seed eggNOG ortholog2880.D7FMQ9
Model size399
KEGG koko:K12874
KEGG Pathwayko03040,map03040
KEGG ModuleM00355
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0071014,GO:0071704,GO:0090304,GO:1901360,GO:1990904
Exons2
EggNOG free text desc.mRNA splicing, via spliceosome
EggNOG OGsKOG1806@1,KOG1806@2759
Cds size399
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462987.248132-CDS-Ecto-sp13_S_contig19456:369..6511681462987.248132-CDS-Ecto-sp13_S_contig19456:369..651Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19456 370..651 +
1681462987.2641673-CDS-Ecto-sp13_S_contig19456:1147..12641681462987.2641673-CDS-Ecto-sp13_S_contig19456:1147..1264Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19456 1148..1264 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19456.6253.1prot_Ecto-sp13_S_contig19456.6253.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19456 370..1264 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19456.6253.1

>prot_Ecto-sp13_S_contig19456.6253.1 ID=prot_Ecto-sp13_S_contig19456.6253.1|Name=mRNA_Ecto-sp13_S_contig19456.6253.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=133bp
MQAVSLSPPLPHLLFSLLTPLRNPYRSFNLFRLESAYEIRGDLVDAIRRT
NPRRDPTRGGATRFEGWARMATPISGVSITEVKKPNLGEKVPAEVLSEVS
LNLAHFDRMHMREEWDTLREHDVVFLVSIQSPH
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mRNA from alignment at Ecto-sp13_S_contig19456:370..1264+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19456.6253.1 ID=mRNA_Ecto-sp13_S_contig19456.6253.1|Name=mRNA_Ecto-sp13_S_contig19456.6253.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=895bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19456:370..1264+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAAGCCGTATCTCTCTCCCCGCCCCTCCCTCACCTTCTTTTTTCGTT GCTTACCCCGTTGCGAAACCCCTACAGGAGCTTCAACCTCTTCCGGCTAG AGTCTGCCTACGAGATTCGCGGAGACCTCGTGGACGCCATCCGCCGCACC AACCCCAGGCGCGACCCCACCAGGGGGGGTGCCACCCGTTTCGAGGGCTG GGCCCGGATGGCGACGCCTATCTCGGGGGTTTCCATCACCGAAGTCAAGA AGCCGAACCTTGGGGAGAAGGTGCCGGCGGAGGTGCGTCGATGTTTGTTC TTTTTTTTTTTGTCGCCCCCCATTGCCCAGACGAAGGCTCCGGTGTTTTT TGCCTGATGTTGAGGTTTTGTTGTTGTCACTTGCCGTTTTCCAGACTAAG GCTCCGGTGTTTTTTGCCTGATGTTTATTGTTTGCTTTTTTGTATCACCC CATCTACGAGACGAAGGCTCGAGCATTTTTCCCGGATATCTATCGGGTTC ATCGCTGGTGTTGTCTATTAGTGCGTCGTTGTTGTTTTTTTGTTTTTTTG CCGGATAGGTTCATCGGAGAGTGCCACAGAAAAGATGGGAAAAGAAAAAA TCGGCACTGGTAGACTGTGGAGCCTCTGTCCAAGGCGAGAATGAACGCAT TCGGTAGGCCCTTACCCCCCAAAGTCGATGTGCGTTTTGCTGCCGTCATG GTGCTTTGGTCCCCCAAACTCAAACACTACCTTGTATGCTGCCCGTCGTC ATCGCGCTCGTTCATCGTTTGCACATAGGTTCTCTCCGAGGTGAGCCTCA ACCTGGCCCACTTCGACCGGATGCACATGCGCGAGGAGTGGGACACGCTT CGGGAGCACGACGTGGTCTTCCTGGTCTCCATACAGTCCCCCCAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19456:370..1264+

>mRNA_Ecto-sp13_S_contig19456.6253.1 ID=mRNA_Ecto-sp13_S_contig19456.6253.1|Name=mRNA_Ecto-sp13_S_contig19456.6253.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=399bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19456:370..1264+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAAGCCGTATCTCTCTCCCCGCCCCTCCCTCACCTTCTTTTTTCGTT
GCTTACCCCGTTGCGAAACCCCTACAGGAGCTTCAACCTCTTCCGGCTAG
AGTCTGCCTACGAGATTCGCGGAGACCTCGTGGACGCCATCCGCCGCACC
AACCCCAGGCGCGACCCCACCAGGGGGGGTGCCACCCGTTTCGAGGGCTG
GGCCCGGATGGCGACGCCTATCTCGGGGGTTTCCATCACCGAAGTCAAGA
AGCCGAACCTTGGGGAGAAGGTGCCGGCGGAGGTTCTCTCCGAGGTGAGC
CTCAACCTGGCCCACTTCGACCGGATGCACATGCGCGAGGAGTGGGACAC
GCTTCGGGAGCACGACGTGGTCTTCCTGGTCTCCATACAGTCCCCCCAC
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