mRNA_Ecto-sp13_S_contig19439.6243.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig19439.6243.1 vs. uniprot
Match: A0A6H5L6K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6K9_9PHAE) HSP 1 Score: 316 bits (809), Expect = 7.730e-97 Identity = 160/166 (96.39%), Postives = 161/166 (96.99%), Query Frame = 1
Query: 4 LLALHCVSHNQNAFQDFMLHAAPVTRRQRQRGGGGVDMEEYARRMTSTRCDGDHITLQALCDALKVNINVVKWTRDDGWYPRTVTSATSNDAAAAXXXXAAVAEEPRRPSQSVFVADTLRPRAVSSLDARARDLQLQGRTLWLSLHGEAHFRSLRVRDPVTEAEAA 501
LLALHCVSHNQNAFQDFMLHAAPVTRRQRQRGGGGVDMEEYARRMTSTRCDGDHITLQALCDALKVNINVVKWTRDDGWYPR VTSATSNDAAAA AAVAEEPRRPS+SVFVADTLRPRAVSSLDARARDLQLQGRTLWLSLHGEAHFRSLRVRDPVTEAEAA
Sbjct: 97 LLALHCVSHNQNAFQDFMLHAAPVTRRQRQRGGGGVDMEEYARRMTSTRCDGDHITLQALCDALKVNINVVKWTRDDGWYPRPVTSATSNDAAAATNPPAAVAEEPRRPSRSVFVADTLRPRAVSSLDARARDLQLQGRTLWLSLHGEAHFRSLRVRDPVTEAEAA 262
BLAST of mRNA_Ecto-sp13_S_contig19439.6243.1 vs. uniprot
Match: D7FVY3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVY3_ECTSI) HSP 1 Score: 313 bits (802), Expect = 6.880e-96 Identity = 157/167 (94.01%), Postives = 162/167 (97.01%), Query Frame = 1
Query: 1 RLLALHCVSHNQNAFQDFMLHAAPVTRRQRQRGGGGVDMEEYARRMTSTRCDGDHITLQALCDALKVNINVVKWTRDDGWYPRTVTSATSNDAAAAXXXXAAVAEEPRRPSQSVFVADTLRPRAVSSLDARARDLQLQGRTLWLSLHGEAHFRSLRVRDPVTEAEAA 501
RLLALHCVSHNQNAFQDFMLHAAPVTRRQRQRGGGGVDMEEYARRMTS+RCDGDHITLQALCDALKVNINVVKWTRDDGWYPRTV SAT+NDAA+A AAVAEEPRRPS+SVFVADTLRPRAV+SLDARARDLQLQGRTLWLSLHGEAHFRSLRVRDPVTEAEAA
Sbjct: 134 RLLALHCVSHNQNAFQDFMLHAAPVTRRQRQRGGGGVDMEEYARRMTSSRCDGDHITLQALCDALKVNINVVKWTRDDGWYPRTVASATTNDAASASNPPAAVAEEPRRPSRSVFVADTLRPRAVASLDARARDLQLQGRTLWLSLHGEAHFRSLRVRDPVTEAEAA 300
BLAST of mRNA_Ecto-sp13_S_contig19439.6243.1 vs. uniprot
Match: A0A7S1C001_9STRA (Hypothetical protein n=3 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1C001_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 3.190e-20 Identity = 57/175 (32.57%), Postives = 90/175 (51.43%), Query Frame = 1
Query: 1 RLLALHCVSHNQNAFQDFMLHAAPVTRRQRQRGGGGVDMEEYARRMTSTRCDGDHITLQALCDALKVNINVVKWTRDDGWYPRTVTSATSN-----------------DAAAAXXXXAAVAEEPRRPSQSVFVADTLRPRAVSSLDARARDLQ--LQGRTLWLSLHGEAHFRSLR 468
R L LH +SHN ++ F++ TR Q GG GVD+ Y M+ + DGDH+TLQALCD LK+ I +VK T TS+ D + + ++ S+++++++ ++PR + +D R +D+Q ++GR +WLS G+AHFR LR
Sbjct: 187 RKLVLHAISHNPECYRHFLVVPGRRTRSSSQEGGTGVDLTHYLHTMSKSSTDGDHVTLQALCDVLKITIRIVKPVTHHSSTQSTSYDGTSDYLSDDSSSTFSSNPPVLDPLSLSTGVFPIIDKCSSFSRNIYISEEMQPRRLERIDRRIQDVQNLVRGRLVWLSHVGDAHFRYLR 361
BLAST of mRNA_Ecto-sp13_S_contig19439.6243.1 vs. uniprot
Match: A0A7S1CKW7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CKW7_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 5.890e-20 Identity = 64/172 (37.21%), Postives = 86/172 (50.00%), Query Frame = 1
Query: 1 RLLALHCVSHNQNAFQDFMLHAAPVTRRQRQRGGGGVDMEEYARRMTSTRCDGDHITLQALCDALKVNINVVKWTRDDGWYPRTVTSATSNDAAAAXXXXAAVAEEPRRPSQSVFVADTLRPRAVS-SLDARARD----LQLQGRTLWLSLHGEAHFRSLRVRDPVTEAEAA 501
R L + + ++ A+Q F+LHA TRRQ+ GG VD E Y RM+ RCDGDH+TLQAL DA +NVVKWT G + V+VA +RPR + + R+ D + GR++WLSL+GEAH+RSL + V A A
Sbjct: 169 RRLVIRTMRNSVGAYQMFLLHAHARTRRQQGIGGVSVDFERYLSRMSEERCDGDHVTLQALADATGCELNVVKWTDGAGGE-----------------------------GEGVYVAQPVRPRQLRRKVCPRSADGSPLVNGSGRSVWLSLYGEAHYRSLCLAPGVAGAGGA 311
BLAST of mRNA_Ecto-sp13_S_contig19439.6243.1 vs. uniprot
Match: A0A7S0CDU1_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CDU1_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 1.940e-19 Identity = 74/216 (34.26%), Postives = 100/216 (46.30%), Query Frame = 1
Query: 1 RLLALHCVSHNQNAFQDFMLHAAPV-TRRQRQRGGGGVDMEEYARRMTSTRCDGDHITLQALCDALKVNINVVKWTR----------------DDGWYPRTVT--------------------------------------SATSNDAAAAXXXXAAVAEEPRRPSQSVFVADTLRPRAVSSLDARARDLQ--LQGRTLWLSLH---GEAHFRSLR 468
R LALH +SHN + +QDF+ A TR Q GG GVDM+ Y M+ +CDGD ITLQALCDALK+ I VVK + DD Y R + S+TS + + E P P + V++ +RPR +S +D+R +++Q ++GR +WLS H GEAHFR LR
Sbjct: 222 RRLALHTISHNPHMYQDFLTTAGGRRTRSQSTTGGRGVDMKSYLSSMSDPKCDGDAITLQALCDALKITIRVVKPVKQQGRNNDVYINVYSGNDDEIYRRHLLRLLHERMQFEVTESIASLSDECDSEDDCPSMESTECSISSTSCPFESCSVDNVLLNENPTNPKSYLSVSEEIRPRRLSRIDSRVKEVQSHVRGRLIWLS-HVGPGEAHFRYLR 436
BLAST of mRNA_Ecto-sp13_S_contig19439.6243.1 vs. uniprot
Match: A0A7S1XTZ1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XTZ1_9STRA) HSP 1 Score: 93.2 bits (230), Expect = 3.390e-19 Identity = 64/167 (38.32%), Postives = 83/167 (49.70%), Query Frame = 1
Query: 1 RLLALHCVSHNQNAFQDFMLHAAPVTRRQRQRGGGGVDMEEYARRMTSTRCDGDHITLQALCDALKVNINVVKWTR------DDGWYPRTVTSATSNDAAAAXXXXAAVAEEPRRPSQSVFVADTLRPRA-VSSLDARARDLQLQGRTLWLSLHG-EAHFRSLRVRD 477
R LAL + + +QDFML AAP+TR QR RGG GV M +Y RM+ CDGDH+TLQALCDAL+V + V++W D + R + + R + + L PR L ++ R LWLS G EAHFRSLR+ D
Sbjct: 179 RHLALDTIRSDPAHYQDFMLAAAPLTRAQRSRGGKGVRMHDYLSRMSDLGCDGDHLTLQALCDALRVRVRVLRWAPLDIAGGQDHYLERDLLT--------------------RGRKIGLIHSHELHPRERPGDLSPLGEGFEVPLRVLWLSQVGSEAHFRSLRLLD 325
BLAST of mRNA_Ecto-sp13_S_contig19439.6243.1 vs. uniprot
Match: I2CPN9_NANGC (OTU domain-containing protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPN9_NANGC) HSP 1 Score: 63.5 bits (153), Expect = 2.920e-9 Identity = 33/72 (45.83%), Postives = 45/72 (62.50%), Query Frame = 1
Query: 1 RLLALHCVSHNQNAFQDFMLHAAPVTRRQRQRGGGGVDMEEYARRMTSTRCDGDHITLQALCDALKVNINVV 216
R LAL+ ++ ++ F+ FML P TRRQ + G VD Y +M+ R DGDH+TLQAL DAL+ I V+
Sbjct: 114 RQLALYVIATHEAHFRSFMLPPNPRTRRQNRTAGESVDFSRYLEKMSDPRTDGDHLTLQALADALQCPIRVL 185
BLAST of mRNA_Ecto-sp13_S_contig19439.6243.1 vs. uniprot
Match: A0A4D9D067_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D067_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 5.430e-8 Identity = 49/143 (34.27%), Postives = 65/143 (45.45%), Query Frame = 1
Query: 58 LHAAPV--TRRQRQRGGGGVDMEEYARRMTSTRCDGDHITLQALCDALKVNINVVKWTRDDGWYPRTVTSATSNDAAAAXXXXAAVAEEPRRPSQSVFVADTLRPRAVSSLDARARDLQLQGRTLWLSLHGEAHFRSLRVRDP 480
LHA P TRRQ + G VD Y +M+ R DGDH+TLQAL DAL+ I V+ P + T +++ P +L P + L+ L++ R LWL+L GEAHFRSL P
Sbjct: 126 LHAPPNPRTRRQNRTAGESVDFSRYLEKMSDPRTDGDHLTLQALADALQCPIRVLSLV------PAPLAEKTLAHCIKTTMVLSSLLPGP----------PSLPPSPLPPLER----LRVPRRELWLTLRGEAHFRSLLPSPP 248 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19439.6243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig19439.6243.1 >prot_Ecto-sp13_S_contig19439.6243.1 ID=prot_Ecto-sp13_S_contig19439.6243.1|Name=mRNA_Ecto-sp13_S_contig19439.6243.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=167bp RLLALHCVSHNQNAFQDFMLHAAPVTRRQRQRGGGGVDMEEYARRMTSTRback to top mRNA from alignment at Ecto-sp13_S_contig19439:1689..3278- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig19439.6243.1 ID=mRNA_Ecto-sp13_S_contig19439.6243.1|Name=mRNA_Ecto-sp13_S_contig19439.6243.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1590bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19439:1689..3278- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19439:1689..3278- >mRNA_Ecto-sp13_S_contig19439.6243.1 ID=mRNA_Ecto-sp13_S_contig19439.6243.1|Name=mRNA_Ecto-sp13_S_contig19439.6243.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=501bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19439:1689..3278- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |