mRNA_Ecto-sp13_S_contig1943.6239.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1943.6239.1
Unique NamemRNA_Ecto-sp13_S_contig1943.6239.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1943.6239.1 vs. uniprot
Match: D7G8J5_ECTSI (HIT-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8J5_ECTSI)

HSP 1 Score: 369 bits (946), Expect = 7.130e-129
Identity = 189/191 (98.95%), Postives = 190/191 (99.48%), Query Frame = 1
Query:    1 MSQSKRKAWDATVQASGHVPTRTKTKRASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTEDHGGEQDDEFALDEDDERGDRPRGRSRAGKAPGNKSKNKGEKDPWKERKFKSLHQVLYELTNELSAYPGGATAVSIEAPVSKHPPRAFCSVCGYHGLYTCTRCGSRFCSSKCCEQHKETRCLKFAS 573
            MSQSKRKAWDATVQASGHVPTRTKTKRASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTEDHGGEQDDEFALDEDDERGDRPRGRSRAGKAPGNK+KNKGEKDPWKERKFKSLHQVLYELTNELSAYPGGATAVSIEAPVSKHPPRAFCSVCGYHGLYTCTRCGSRFCSSKC EQHKETRCLKFAS
Sbjct:    1 MSQSKRKAWDATVQASGHVPTRTKTKRASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTEDHGGEQDDEFALDEDDERGDRPRGRSRAGKAPGNKNKNKGEKDPWKERKFKSLHQVLYELTNELSAYPGGATAVSIEAPVSKHPPRAFCSVCGYHGLYTCTRCGSRFCSSKCYEQHKETRCLKFAS 191          
BLAST of mRNA_Ecto-sp13_S_contig1943.6239.1 vs. uniprot
Match: W7TJ72_9STRA (Zinc finger, HIT-type n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ72_9STRA)

HSP 1 Score: 144 bits (362), Expect = 4.030e-40
Identity = 96/194 (49.48%), Postives = 117/194 (60.31%), Query Frame = 1
Query:    1 MSQSKRKAWDATVQASGHVPTRTK---TKRASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTEDHGGEQDDEFALDEDDERGDRPRGRSRAGKAPGNKSKNKGEKDPWKERKFKSLHQVLYELTNELSAYPGGATAVSIEAPVSKHPPRAFCSVCGYHGLYTCTRCGSRFCSSKCCEQHKETRCLKFAS 573
            MS +KR AWD  +  +G    +TK    KR+SGR  VLSK+M+VVDEETR +V+DARLEALEADNY E+ G E D+ +    D E   RP+ +  A +      + +         + K L Q +YE   E S  P   TA    A  S  P R FCSVCGY GLYTCTRCG R+CSSKC E HKETRCLKFA+
Sbjct:    1 MSTNKRSAWDEAMGLAGAGIKQTKKKGAKRSSGRQAVLSKAMQVVDEETRREVRDARLEALEADNYVENAGEEMDEAYV---DSEEEGRPKVKREAKRKRSMAQRQQMANKLISSFRKKPLAQWVYEAGYERSNGPNYLTAA---AQPSSLPTRCFCSVCGYWGLYTCTRCGMRYCSSKCAETHKETRCLKFAT 188          
BLAST of mRNA_Ecto-sp13_S_contig1943.6239.1 vs. uniprot
Match: A0A485KXM9_9STRA (Aste57867_13128 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KXM9_9STRA)

HSP 1 Score: 134 bits (338), Expect = 1.820e-36
Identity = 88/187 (47.06%), Postives = 118/187 (63.10%), Query Frame = 1
Query:   16 RKAWDATVQASGHV-PTRTKTKRASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTEDHGGEQDDEFALDEDDERGDRPRGRSRAGKAPGNKSKNKGEKDPWKERKFKSLHQVLYELTNELSAYPGGATAVSIEAPV--SKHPPRAFCSVCGYHGLYTCTRCGSRFCSSKCCEQHKETRCLKF 567
            ++ WD T+ +SG V P  T  KR SGRTV +SK+M+ VDEETR QV++ARL+ALEADNY E   G++D  F LD+D+ +  + + +++  KA       +G       RK KSL Q ++E   +++  P  +T   + A V  S HPPR FC VCG    YTC RCGSRFCS +C +QHKET CLKF
Sbjct:    7 KRQWDQTMASSGLVAPGHTPKKRFSGRTVKISKAMKHVDEETRQQVRNARLDALEADNYVEATEGDED-MFILDDDEPKKPKSKAKAKQPKAAPLVPTARGRHRIV--RKVKSLRQWIFEECGDVTNDPLSSTPTYLSAAVKPSTHPPRHFCCVCGLFSSYTCGRCGSRFCSVRCGDQHKETGCLKF 190          
BLAST of mRNA_Ecto-sp13_S_contig1943.6239.1 vs. uniprot
Match: A0A7S1U8Q5_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8Q5_9STRA)

HSP 1 Score: 127 bits (318), Expect = 2.120e-33
Identity = 81/196 (41.33%), Postives = 115/196 (58.67%), Query Frame = 1
Query:   16 RKAWDATVQASGHVPTRTKTKRASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTEDHGGEQDDEFALDEDDERGDRPRGRSRAGKAPGN-------KSKNKGEKDPWKERKFKSLHQVLYELTNELSAYPGGATAVSIEAPV---SKHPPRAFCSVCGYHGLYTCTRCGSRFCSSKCCEQHKETRCLKFAS 573
            RK W+ T++A G       ++R+S R   +S+ +RVVD ETR  V++ARL+ALEADNY E+H   QDD +   + +E    P+ +                K+K+ G K  WK+RK+K L QV+YE   + +    GA +V+  +     S+ PPRAFCSVCGY G + C RCG R+C  +C E HKETRC+KF +
Sbjct:    9 RKGWNETMKAMGAKAPGGNSRRSSSRIATVSRDLRVVDAETREHVRNARLDALEADNYMEEHVA-QDDAYEEVDSEEEAAEPKAKXXXXXXXXXXXXXTTAKAKDPGHK--WKKRKYKPLRQVVYEQGYDAT----GAASVNHSSAAMGPSRFPPRAFCSVCGYFGTFKCPRCGMRYCRRRCQEAHKETRCMKFGT 197          
BLAST of mRNA_Ecto-sp13_S_contig1943.6239.1 vs. uniprot
Match: W4G490_9STRA (HIT-type domain-containing protein n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G490_9STRA)

HSP 1 Score: 122 bits (307), Expect = 8.280e-32
Identity = 87/195 (44.62%), Postives = 109/195 (55.90%), Query Frame = 1
Query:   16 RKAWDATVQASG-HVPTRTKT--KRASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTEDHGGEQDDEFALDEDDERGDRPRGRSRAGKAPGNKSKNKGEKDPWKE--------RKFKSLHQVLYELTNELSAYPGGATAVSIEAPVSKHPPRAFCSVCGYHGLYTCTRCGSRFCSSKCCEQHKETRCLKF 567
            ++ WD T+ +SG  VP   K   KR SGRTV +SK+M+ VDEETR QV++ARL+ALEADNY E   G  +D F LD+DD+          A K    KSK K  K    +        RK KSL Q+++E   +          V+     +K PPR FC VCG    YTC RCGS+FC  +C  QHKET CLKF
Sbjct:    7 KRQWDQTMASSGLAVPGSAKVSRKRFSGRTVKISKAMKHVDEETRRQVRNARLDALEADNYMESTDGADEDMFVLDDDDD----------AKKPTKPKSKAKANKHQVPQALGRHRMVRKVKSLRQLIFEECGD-GMSSTDINYVTAAVKPAKTPPRHFCCVCGLLSSYTCGRCGSKFCCVRCGNQHKETGCLKF 190          
BLAST of mRNA_Ecto-sp13_S_contig1943.6239.1 vs. uniprot
Match: A0A024TKA6_9STRA (HIT-type domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TKA6_9STRA)

HSP 1 Score: 122 bits (306), Expect = 1.340e-31
Identity = 86/201 (42.79%), Postives = 119/201 (59.20%), Query Frame = 1
Query:   16 RKAWDATVQASG-------HVPTRTKTKRASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTEDHGGEQDDEFALDEDDERGDRPRGRSRAGKAPGNKSKNKGEKD-PWKE------RKFKSLHQVLYELTNELSAYPGGATAVS-IEAPVS--KHPPRAFCSVCGYHGLYTCTRCGSRFCSSKCCEQHKETRCLKF 567
            ++ WD T+ +SG       HVP     KR SGRT+ +SK+M+ VDEETR QV++ARL+ALEADNY E+     +D F LDEDD+        ++    P +K+K KG    P  +      RK KSL  +++E   +++  PG  + ++ + A V   K PPR FC VCG   +Y+C RCGS+FC  +C  QHKET CLKF
Sbjct:    7 KRQWDQTMASSGVVAPGSGHVPR----KRFSGRTMKISKTMKHVDEETRRQVRNARLDALEADNYMENTDDGDEDMFVLDEDDD------AVAKKASKPKSKAKAKGTLHVPQAQGRHRVVRKIKSLRHLIFEECGDVA--PGNDSVINYVTAAVKPPKTPPRHFCCVCGLLSVYSCGRCGSKFCCVRCGNQHKETGCLKF 195          
BLAST of mRNA_Ecto-sp13_S_contig1943.6239.1 vs. uniprot
Match: K3X0J0_GLOUD (HIT-type domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X0J0_GLOUD)

HSP 1 Score: 119 bits (297), Expect = 3.240e-30
Identity = 84/193 (43.52%), Postives = 112/193 (58.03%), Query Frame = 1
Query:   16 RKAWDATV----QASGHVPTRTKTKRASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTEDHGGEQDDEFALDE---DDERGDRPRGRSRAGKAP-GNKSKNKGEKDPWKERKFKSLHQVLYELTNELSAY-PGGATAVSIEAPVSKHPPRAFCSVCGYHGLYTCTRCGSRFCSSKCCEQHKETRCLKF 567
            +K W+ T+     A+       KTKR SGRTV LSK+M+ VDEETR  V++ARL+ALEADNY  D   + DD   +D+   DD  GD P G    GK     K++    K   K+ K KSL Q+++E      A  P     +++ A  S  P R FC VCG+  +Y+CTRCGSR+C  KC ++HKE+ CLKF
Sbjct:    8 KKRWNETILRTTAAAATAKRAAKTKRFSGRTVKLSKAMQHVDEETRTIVRNARLDALEADNYGVDAEADGDDANDVDDMYIDD--GDVPSGAGTPGKDKRARKNRKLATKAKAKKWKVKSLAQLVFEEHGAGDAVDPNMPNYITVAAAASTRPARRFCCVCGFFAVYSCTRCGSRYCRIKCGDEHKESSCLKF 198          
BLAST of mRNA_Ecto-sp13_S_contig1943.6239.1 vs. uniprot
Match: A0A067BTG0_SAPPC (HIT-type domain-containing protein n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067BTG0_SAPPC)

HSP 1 Score: 115 bits (288), Expect = 6.470e-29
Identity = 88/199 (44.22%), Postives = 113/199 (56.78%), Query Frame = 1
Query:    4 SQSKRKAWDATVQASGHVPTRTKTKRASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTEDHGGEQDDEFALDEDDERGDRPRGRSRA---GKAPGNKSKNKGEKDPWKERKFKSLHQVLYELTNELSAYPG-GATAVSIEAPVSKHPPRAFCSVCGY------HGLYTCTRCGSRFCSSKCCEQHKETRCLKFA 570
            S++ ++ WD T+ +SG        KR SGR V +SK+M+ VDEETR QV++ARL+ALEADNY E    + DDE    EDD  G +   +SRA    KAP     + G +     RK KSL Q+++E   E     G G   V+     +  PPR FC VCGY         Y C RCGSRFCS KC +QH+ET CLKF+
Sbjct:    3 SKNAKRQWDQTMASSGLALPTAPRKRNSGRAVKISKAMKHVDEETRKQVRNARLDALEADNYVE-PTEDGDDEDLYIEDDAVGPKKSSKSRAKGKAKAPVVPISSSGRRRVV--RKVKSLAQLVFE---ECGTGEGLGPNYVTAAVKPATTPPRKFCVVCGYPFDRTLFSNYACGRCGSRFCSVKCGDQHRETGCLKFS 195          
BLAST of mRNA_Ecto-sp13_S_contig1943.6239.1 vs. uniprot
Match: A0A1V9YMM7_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YMM7_9STRA)

HSP 1 Score: 112 bits (280), Expect = 1.680e-27
Identity = 89/221 (40.27%), Postives = 118/221 (53.39%), Query Frame = 1
Query:    4 SQSKRKAWDATVQASGHVPTRTKTKRASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTEDHGGEQDDEFALDEDDERGDRPRGRSRAGKAPGNKSKNKGEKDPWK-------ERKFKSLHQVLYEL--TNELSAYPGGATAVSIEAPVSKHPPRAFCSVCGY------HGL------------------YTCTRCGSRFCSSKCCEQHKETRCLKF 567
            S++ ++ WD T+ +SG    +   KR SGRTV +SK+M+ VDEETR QV++ARL+ALEADNY E     +D++  +++D     +   +SRA      K+K+KG   P          RK KSL  +++E   T E +  P   TA    A   K PPR FC VCGY      H                    YTC RCGSRFCS +C +QHKET CLKF
Sbjct:    3 SKNAKRQWDQTMASSGLALPQAPRKRYSGRTVKISKAMKHVDEETRKQVRNARLDALEADNYVEPTDDGEDEDLYIEDDSGTPSKKPLKSRA------KAKSKGTVVPVSISGRRRIVRKVKSLAHLIFEECGTGEDTQRPNYITAAVKPA---KTPPRHFCVVCGYPFRYSLHAACTSKTVLRSLTRRTLFSDYTCGRCGSRFCSVRCGDQHKETGCLKF 214          
BLAST of mRNA_Ecto-sp13_S_contig1943.6239.1 vs. uniprot
Match: A0A6G0X8S1_9STRA (HIT-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X8S1_9STRA)

HSP 1 Score: 111 bits (278), Expect = 1.730e-27
Identity = 75/185 (40.54%), Postives = 107/185 (57.84%), Query Frame = 1
Query:   16 RKAWDATVQASGHV-PTRTKTKRASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTEDHGGEQDDEFALDEDDERGDRPRGRSRAGKAPGNKSKNKGEKDPWKERKFKSLHQVLYELTNELSAYPGGATAVSIEAPVSKHPPRAFCSVCGYHGLYTCTRCGSRFCSSKCCEQHKETRCLKF 567
            ++ WD T+++SG V P +   KR SGRTV +SK+M++VDEETR QV++ARL+ALEADNY E    + +D F L++                        +        RK KSL Q+++E   +  +      + +++ P  K PPR FC+VCG+   Y C RCGS+FCS +C +QHKET CLKF
Sbjct:    7 KRQWDQTMKSSGLVAPGQAPKKRFSGRTVKISKAMKLVDEETRQQVRNARLDALEADNYVE-QTEDDEDMFVLEDXXXXXXXXXXXXXXXXXXATPVVPQALGRRRIVRKVKSLRQLIFEECGDGESSIPNYISAAVKPP--KEPPRHFCAVCGHFSCYNCGRCGSKFCSVQCGDQHKETGCLKF 188          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1943.6239.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8J5_ECTSI7.130e-12998.95HIT-type domain-containing protein n=2 Tax=Ectocar... [more]
W7TJ72_9STRA4.030e-4049.48Zinc finger, HIT-type n=1 Tax=Nannochloropsis gadi... [more]
A0A485KXM9_9STRA1.820e-3647.06Aste57867_13128 protein n=1 Tax=Aphanomyces stella... [more]
A0A7S1U8Q5_9STRA2.120e-3341.33Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
W4G490_9STRA8.280e-3244.62HIT-type domain-containing protein n=7 Tax=Aphanom... [more]
A0A024TKA6_9STRA1.340e-3142.79HIT-type domain-containing protein n=1 Tax=Aphanom... [more]
K3X0J0_GLOUD3.240e-3043.52HIT-type domain-containing protein n=1 Tax=Globisp... [more]
A0A067BTG0_SAPPC6.470e-2944.22HIT-type domain-containing protein n=3 Tax=Saprole... [more]
A0A1V9YMM7_9STRA1.680e-2740.27Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A6G0X8S1_9STRA1.730e-2740.54HIT-type domain-containing protein n=1 Tax=Aphanom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1943contigEcto-sp13_S_contig1943:11157..13877 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score374.0
Seed ortholog evalue4.2e-101
Seed eggNOG ortholog2880.D7G8J5
Preferred nameZNHIT1
Model size576
KEGG koko:K11663,ko:K12846
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0000228,GO:0000785,GO:0000790,GO:0000812,GO:0002682,GO:0002694,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005700,GO:0005737,GO:0006325,GO:0006338,GO:0006355,GO:0006357,GO:0006950,GO:0006952,GO:0006996,GO:0008150,GO:0009605,GO:0009607,GO:0009617,GO:0009889,GO:0009890,GO:0009892,GO:0009909,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010629,GO:0010948,GO:0016043,GO:0019219,GO:0019222,GO:0019899,GO:0031056,GO:0031063,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031399,GO:0031491,GO:0031974,GO:0031981,GO:0032268,GO:0032944,GO:0032991,GO:0033043,GO:0033044,GO:0034728,GO:0040008,GO:0042127,GO:0042129,GO:0042742,GO:0042802,GO:0042826,GO:0043044,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043486,GO:0043933,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044877,GO:0045786,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0048580,GO:0048638,GO:0048831,GO:0050670,GO:0050789,GO:0050793,GO:0050794,GO:0050863,GO:0050865,GO:0050896,GO:0051128,GO:0051171,GO:0051172,GO:0051239,GO:0051246,GO:0051249,GO:0051252,GO:0051253,GO:0051276,GO:0051704,GO:0051707,GO:0051726,GO:0060255,GO:0065007,GO:0070013,GO:0070316,GO:0070317,GO:0070603,GO:0070663,GO:0071824,GO:0071840,GO:0080090,GO:0090311,GO:0097346,GO:0098542,GO:1902275,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1904949,GO:2000026,GO:2000112,GO:2000113,GO:2000241,GO:2001141
Exons6
EggNOG free text desc.regulation of histone deacetylation
EggNOG OGsKOG3362@1,KOG3362@2759
Ec32 ortholog descriptionZinc finger, HIT-type
Ec32 orthologEc-14_003240.1
Cds size576
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03036,ko03041
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1943.6239.1prot_Ecto-sp13_S_contig1943.6239.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1943 11157..13877 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462986.216788-CDS-Ecto-sp13_S_contig1943:11156..113571681462986.216788-CDS-Ecto-sp13_S_contig1943:11156..11357Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1943 11157..11357 -
1681462986.2301085-CDS-Ecto-sp13_S_contig1943:11709..117551681462986.2301085-CDS-Ecto-sp13_S_contig1943:11709..11755Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1943 11710..11755 -
1681462986.2393575-CDS-Ecto-sp13_S_contig1943:12289..124171681462986.2393575-CDS-Ecto-sp13_S_contig1943:12289..12417Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1943 12290..12417 -
1681462986.2489183-CDS-Ecto-sp13_S_contig1943:12927..129811681462986.2489183-CDS-Ecto-sp13_S_contig1943:12927..12981Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1943 12928..12981 -
1681462986.2635524-CDS-Ecto-sp13_S_contig1943:13482..135411681462986.2635524-CDS-Ecto-sp13_S_contig1943:13482..13541Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1943 13483..13541 -
1681462986.2717683-CDS-Ecto-sp13_S_contig1943:13789..138771681462986.2717683-CDS-Ecto-sp13_S_contig1943:13789..13877Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1943 13790..13877 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1943.6239.1

>prot_Ecto-sp13_S_contig1943.6239.1 ID=prot_Ecto-sp13_S_contig1943.6239.1|Name=mRNA_Ecto-sp13_S_contig1943.6239.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=192bp
MSQSKRKAWDATVQASGHVPTRTKTKRASGRTVVLSKSMRVVDEETRNQV
KDARLEALEADNYTEDHGGEQDDEFALDEDDERGDRPRGRSRAGKAPGNK
SKNKGEKDPWKERKFKSLHQVLYELTNELSAYPGGATAVSIEAPVSKHPP
RAFCSVCGYHGLYTCTRCGSRFCSSKCCEQHKETRCLKFAS*
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mRNA from alignment at Ecto-sp13_S_contig1943:11157..13877-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1943.6239.1 ID=mRNA_Ecto-sp13_S_contig1943.6239.1|Name=mRNA_Ecto-sp13_S_contig1943.6239.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2721bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1943:11157..13877- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTCAAAGCAAGAGGAAGGCGTGGGATGCCACGGTGCAAGCTAGCGG GCATGTCCCAACACGTACAAAAACGAAGCGGGCTTCAGGTGAGAGTCCTC CCACGAACAAAACTTCGACAGAGAGCCAGCGGATGCGTGTAGTCATGACC TTAAACCGCTCAACCCGGAGTGGGAGGCTGTGTAAAGGCAGCGAAGTATC CCAGCGAAAGCGTTACTGATGAGTATTCCATGTGTTGTAGTGCATGTCAT TTTGGCCCAAACAGTGGCATGTCGATGATAAACGACCGCCACCGACCCCC CCTCTACCTGCCCCCGCCACCGCCTTGATGCCCTAGGACGCACGGTGGTT CTCAGTAAGTCGATGCGCGTTGTGGATGAAGAAACGAGAAATCAGGTTTG TGCATGGTGGATGTGACCGTAGAACAGAGACACGGAGACCGCGATTGCGG ATATGAGAAGGGTCTACCGGACGGTGGTGTTCTACAGCAGCAGCAGTAAA GAGTAGGCTATGATTTGACGGTGAAACCATCAGACCACGGGCAAATAGCA CTTGAGATAGAGGCAAAAAGGCATGCTACGCATTCTCTGCATTAGAGATA CATTGGAGGGTGTCCAAAGTTGTCACAATCGAACAGCCGCAGTCGCGTTC TGTTGTGGTAACCCGTGGTGTAGGCAGAAGTGAAAACACGACAGCTATTT GCCCTGTTCACAACACCGCAGAAATGGTGCCGTCCTCTTCAGATACATGA AGCATTGTGGGCGTTTGATCACACCATTGATCCTCCGCTGCTGCTAGGAT GCTTGTCGTCTTTCGGCATTTTCTCAATCATTATTGTTCCGACCAGGACT GTTACTGCCTTGCTGCTCTCTCAACCCTCCCGCCCCAACGTGACAGGTCA AGGACGCGCGTCTGGAAGCGTTGGAAGCGGATAACTACACCGAAGACCAC GTAAGAATTGAGAACGCTGCCTCTTTGTCCTGTGGAGCTGGTTCCGTTCT GTCCGTGCGCTGACGTTGTTGCCCTAGAAAAGCGGAGTTTCTCAGCCTCA TTTCGACGAGGTCGCACGGCCATGCCTTTTTCGTGTGCTGTGTTTCTCTC TCCACGTGACCTCCGGAGGAAGGGTGGTAACGCTTTGGCGTGCCCGGCAG GAAACACCAACATCTCTAGAGAGTCAAAGCTTTAACTTTTAGAGTTACGT CTGGGCACCTATGATACAAGTGTCCTTCAACTTACACACCCCCCGCCGAG TTCAATGGTCTACCGACTACGGCATGCACACCTATGAGTACACCCCCTCC CTCCTTCTTTCCTCCACATCCTGAACAGGTTTCGGAGCAAGGAATACGTC GCGATCGCGAACCCCGTAGCCAGAACGGCCCAAGACAGCCCGCATCGATT GTTGTCGCGAGTTTAGTGTACGTCCACCCACCTCCACATGTGCTGTTTGT TGCTCTATAGGGAGGAGAGCAGGATGACGAGTTTGCCTTGGATGAGGACG ACGAGCGAGGGGACCGGCCGCGGGGCAGGAGCAGGGCGGGCAAGGCCCCG GGCAACAAGAGCAAGAACAAGGGAGAGAAGGACCCTTGGTGAGGGTACGG CAGCGTGTTGGTTGTGGCTCACGCGCCTGCTCCTGTCGCTTGGGTGGTTG GTCGTTAAAACGGACGATGGGAGTGGAGGCTATGTAGTCGTGTGGGAGGG AGTTTACTCGTGGTGCGTGCGCCGTTTAGCCCGAAGCTAGGAGATGCTGA TGTAGTTCCTTTAGACGGGTTGTGACTTCTATACGAAATTCTGCACGAAC TGCATCGCACACGTTGTTCGGAAGCTGCAACTGGCTACAGCAGTGGTCAG GGCCGCCGTGTGTGTGTATGTATGAGGCCACTCCAAAATTCCACGGCGTT ACCCGTCACGACGTTGGGCGTCCTCCCCGAAGCACAATGTGAAACGACAC ACAGCAGTAGTTGGACTTCACCTGGTTATTTGTTGTACACCAGCGCCTGG CGTATGATCGCCCGCTCGACATTCAAACTGATGTCTCTCTTAAATGATGC GCATGTCCCCCGCCATACCCCTCTTTCTGCCTCTTGCTGACGACATTCTT GCTGCGACCGCGATGAATCCAGGAAAGAGCGCAAGTTCAAGAGCCTGCAC CAGGTCCTCTACGAATTGGTAAGAAAATCCTCGCACGCTGTTCTCGCAAG AGCCACCACCACGTGCCCCTCTTGTTACCGTTGCACGTGGAGAATGCGGT TGGTGCAACAGAGTTGGTCCCCCCGCATTGCGCTTGTTTTCACACGGAGA CGAGGCATGGTGATGTACTTTGCATGTGTTTTTTTTTTCCTTGGAAAGAG GAAGTCCCACCGGCAGAGAAACGTTGCTGCGAAGATCCGTTCCGCTGAAA ACGGAGGCGGCTGGGGATACTCGATGCAAATAGAACCCTCCCGCCGTCTT CCCTCCTCCCCTTTCTTCCTTGCATGCTGATACTGATTATGTTTTGTGCT TTCCCCTCCTCTCCGTACAGACGAACGAACTCTCCGCGTACCCGGGCGGG GCGACGGCTGTGAGCATCGAGGCACCGGTGTCGAAGCACCCGCCGCGGGC GTTCTGTTCCGTGTGTGGCTACCACGGGCTGTACACGTGCACGCGGTGCG GGTCTCGGTTCTGCAGTTCCAAGTGCTGCGAGCAGCACAAGGAGACGCGT TGTCTCAAGTTCGCATCGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1943:11157..13877-

>mRNA_Ecto-sp13_S_contig1943.6239.1 ID=mRNA_Ecto-sp13_S_contig1943.6239.1|Name=mRNA_Ecto-sp13_S_contig1943.6239.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=576bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1943:11157..13877- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTCAAAGCAAGAGGAAGGCGTGGGATGCCACGGTGCAAGCTAGCGG
GCATGTCCCAACACGTACAAAAACGAAGCGGGCTTCAGGACGCACGGTGG
TTCTCAGTAAGTCGATGCGCGTTGTGGATGAAGAAACGAGAAATCAGGTC
AAGGACGCGCGTCTGGAAGCGTTGGAAGCGGATAACTACACCGAAGACCA
CGGAGGAGAGCAGGATGACGAGTTTGCCTTGGATGAGGACGACGAGCGAG
GGGACCGGCCGCGGGGCAGGAGCAGGGCGGGCAAGGCCCCGGGCAACAAG
AGCAAGAACAAGGGAGAGAAGGACCCTTGGAAAGAGCGCAAGTTCAAGAG
CCTGCACCAGGTCCTCTACGAATTGACGAACGAACTCTCCGCGTACCCGG
GCGGGGCGACGGCTGTGAGCATCGAGGCACCGGTGTCGAAGCACCCGCCG
CGGGCGTTCTGTTCCGTGTGTGGCTACCACGGGCTGTACACGTGCACGCG
GTGCGGGTCTCGGTTCTGCAGTTCCAAGTGCTGCGAGCAGCACAAGGAGA
CGCGTTGTCTCAAGTTCGCATCGTAG
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