mRNA_Ecto-sp13_S_contig1942.6233.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1942.6233.1 vs. uniprot
Match: D8LQ95_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ95_ECTSI) HSP 1 Score: 514 bits (1325), Expect = 9.830e-179 Identity = 253/259 (97.68%), Postives = 256/259 (98.84%), Query Frame = 2
Query: 632 AAADRLPSAGAARRRSRLPLKKEDLPDETLRQMADAGRALKELEEEYWKSLDPDEIAIEKKCAAGLACLKAGMLEKGCEYYTAAADLSPPSSRTWPLGVVLYYLGRYEEAAVRLDTDIRSFEKQFEECATDERIWQAAAWIRGAREAGADVEQVAAALPPLPISEPNALRRTVYNMFRGGATPEDVQQVAKVGAGGIDYFGVDFFSEVFLGLYHDAHGNELEAETYILAACGNTYPNPDDLWYHTPRIHAKARNWTIPG 1408
AAADR PSA AARRRSRLPLKKEDLPDETLRQMADAGRALKELEEEYWKSLDPDEIAIEKKCAAGLACLKAGMLEKGCEYYT+AADLSPPS+RTWPLGV+LYYLGRYEEAAVRLDTDIRSFEKQFEECATDERIWQAAAWIRGAREAGADVEQVAAALPPLPISEPNALRRTVYNMFRGG TPEDVQQVAKVGAGGIDYFGVDFFSEVFLGLYHDAHGNELEAETYILAACGNTYPNPDDLWYHTPRIHAKARNWTIPG
Sbjct: 41 AAADRPPSADAARRRSRLPLKKEDLPDETLRQMADAGRALKELEEEYWKSLDPDEIAIEKKCAAGLACLKAGMLEKGCEYYTSAADLSPPSARTWPLGVILYYLGRYEEAAVRLDTDIRSFEKQFEECATDERIWQAAAWIRGAREAGADVEQVAAALPPLPISEPNALRRTVYNMFRGGPTPEDVQQVAKVGAGGIDYFGVDFFSEVFLGLYHDAHGNELEAETYILAACGNTYPNPDDLWYHTPRIHAKARNWTIPG 299
BLAST of mRNA_Ecto-sp13_S_contig1942.6233.1 vs. uniprot
Match: A0A6V1TMQ8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1TMQ8_HETAK) HSP 1 Score: 77.8 bits (190), Expect = 2.320e-12 Identity = 55/212 (25.94%), Postives = 98/212 (46.23%), Query Frame = 2
Query: 761 EEEYWKSLDPDEIAIEKKCAAGLACLKAGMLEKGCEYYTAAADLSPPSSRTWPLGVVLYYLGRYEEAAVRLDTDIRSFEKQFEECATDERIWQAAAWIRGAREAGADVEQVAAALPPLPISEPNALRRTVYNMFRGGATPEDVQQVAKVGAGGIDYFGVDFFSEVFLGLYHDAHGNELEAETYILAACGNTYPNPDDLWYHTPRIHAKARNW 1396
+++ W LD DE + + A ++ E Y+ A + ++ W GV+LY LG+++EA +L +IR +E FE+ AT+ERIW A+ RG D + + +L + E + + +F G ED + + + DY+ + + +LG+ +A +A+ YI +A + DD H ++H R W
Sbjct: 47 DDDVWDQLDDDERQLRRNVATAKELIRMKQAEDALLYFDKAVQIKE-NAFLWQRGVLLYLLGKFDEAHDQLSRNIRHYENVFEQPATEERIWMLASEKRGDLLVVPDQQPFSISLEEEELKESRVVLKKA-ELFLAGEIGED-EVMETIERTKSDYWAC--YGQYYLGVGMEARNQMDKAQKYIRSALEVSPLKEDDAGLHMMQLHGHIRGW 253
BLAST of mRNA_Ecto-sp13_S_contig1942.6233.1 vs. uniprot
Match: A0A6P0ZH85_9CYAN (Uncharacterized protein n=2 Tax=unclassified Sphaerospermopsis TaxID=2646443 RepID=A0A6P0ZH85_9CYAN) HSP 1 Score: 71.6 bits (174), Expect = 1.290e-10 Identity = 53/194 (27.32%), Postives = 89/194 (45.88%), Query Frame = 2
Query: 824 GLACLKAGMLEKGCEYYTAAADLSPP-SSRTWPLGVVLYYLGRYEEAAVRLDTDIRSFEKQFEECATDERIWQ--AAAWIRGAREAGADVEQVAAALPPLPISEPNALRRTVYNMFRGGATPEDVQQVAKVGAGGIDYFGVDFFSEVFLGLYHDAHGNELEAETYILAACGNTYPNPDDLWYHTPRIHAKARNW 1396
G+ + G +E+ + + A L + W G+ YY R+ E A + + D+ + EE +W+ A + G EA + V ++P + R+VY++F G T +DV V K+ +F+S ++LGLY++A GN A+ YI+ A N Y D +WY +H + R W
Sbjct: 32 GMVYFQLGKIEESIQDFDTAETLDAQITPYLWQRGLSYYYAERFTEGAKQFEIDLTVNPQDVEET-----VWRYLCIARLSGVEEANNSLLTVK--------NDPRKIMRSVYDLFAGNCTNDDVLNVGKLAG-----LKGNFYSHLYLGLYYEAEGNFELAKEYIVKAADN-YKIDDYMWYLAV-VHKQVRGW 205
BLAST of mRNA_Ecto-sp13_S_contig1942.6233.1 vs. uniprot
Match: UPI001683F6F1 (hypothetical protein n=1 Tax=Anabaena sphaerica TaxID=212446 RepID=UPI001683F6F1) HSP 1 Score: 71.2 bits (173), Expect = 1.750e-10 Identity = 53/192 (27.60%), Postives = 94/192 (48.96%), Query Frame = 2
Query: 824 GLACLKAGMLEKGCEYYTAAADL-SPPSSRTWPLGVVLYYLGRYEEAAVRLDTDIRSFEKQFEECATDERIWQAAAWIRGAREAGADVEQVAAALPPLPISEPNALRRTVYNMFRGGATPEDVQQVAKVGAGGIDYFGVDFFSEVFLGLYHDAHGNELEAETYILAACGNTYPNPDDLWYHTPRIHAKARNW 1396
G+ + +E+ + + A L S + W G+ YY R+ E A + + D+ + EE +W+ ++ AR +G V + +L P+ ++P + R+VY++F G T +DV V K+G +F++ ++LGLY ++ GN A+ YI+ A N Y D +WY +H + R W
Sbjct: 32 GMVYFQLAKIEESIQDFDTAEKLDSRLTPYLWQRGLSYYYAARFAEGAKQFEIDLTVNAQDVEET-----VWR---YLCTARLSG--VTEARNSLLPVK-NDPRKIMRSVYDLFAGNCTTDDVLNVGKLGG-----LKGNFYNHLYLGLYFESEGNLELAQEYIVKAADN-YKIDDYMWYLAV-VHKQVRGW 205
BLAST of mRNA_Ecto-sp13_S_contig1942.6233.1 vs. uniprot
Match: A0A1Z4SDC6_9NOSO (Uncharacterized protein n=2 Tax=unclassified Nostoc TaxID=2593658 RepID=A0A1Z4SDC6_9NOSO) HSP 1 Score: 70.9 bits (172), Expect = 2.370e-10 Identity = 51/164 (31.10%), Postives = 80/164 (48.78%), Query Frame = 2
Query: 914 WPLGVVLYYLGRYEEAAVRLDTDIRSFEKQFEECATDERIWQAAAWIR--GAREAGADVEQVAAALPPLPISEPNALRRTVYNMFRGGATPEDVQQVAKV-GAGGIDYFGVDFFSEVFLGLYHDAHGNELEAETYILAACGNTYPNPDDLWYHTPRIHAKARNW 1396
W G+ YY R+ E A + + D+ + EE +W+ R G +EA + V ++P + +TVYN++ G TP+DV V K+ G G +F+S ++LGLY++A N A+ YI+ A N Y D +WY ++H K R W
Sbjct: 63 WQRGLSYYYAERFAEGAQQFEIDLTVNAQDVEET-----VWRYLCMARLVGVKEARNSLLTVK--------NDPRRIMQTVYNLYAGNCTPDDVLTVGKLEGDRG------NFYSHLYLGLYYEAENNLDLAQEYIVKAADN-YKIDDYMWY-LAQVHKKLRAW 205
BLAST of mRNA_Ecto-sp13_S_contig1942.6233.1 vs. uniprot
Match: A0A7S3FUV3_9CHLO (Hypothetical protein n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3FUV3_9CHLO) HSP 1 Score: 70.9 bits (172), Expect = 2.550e-10 Identity = 56/190 (29.47%), Postives = 90/190 (47.37%), Query Frame = 2
Query: 845 GMLEKGCEYYTAAADLSPPSS-RTWPLGVVLYYLGRYEEAAVRLDTDIRSFEKQFEECATDERIWQAAAWIRGAREAGADVEQVAAALPPLPIS-EPNALRRTVYNMF--RGGATPEDVQQVAKVGAGGIDYFGVDFFSEVFLGLYHDAHGNELEAETYILAACGNTYP-NPDDLWYHTPRIHAKARNWT 1399
G +E + A DL P R W G+ LYY G YE+AA + D+ T+E +W A++ AR G+ A L + +P L RTVY++F +G + P ++ +VA+ D +F+S +++ L+H++ GNE A+ Y+L A Y D R+H + R W+
Sbjct: 37 GDVEGSVSDFDRAIDLDPSQKPRLWQRGLSLYYAGEYEKAAEQFRVDVSLNPND-----TEEALW---AYLSEARLVGS----AKAKEQFLKVGKDPRPLLRTVYDVFGRQGLSDPSEILEVAESAKSAHD----EFYSLLYVALWHESEGNEGVAKKYMLQAIDTRYALQSGDYMAGLARVHCQVRKWS 210
BLAST of mRNA_Ecto-sp13_S_contig1942.6233.1 vs. uniprot
Match: A0A8J4BUZ0_9CHLO (Uncharacterized protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4BUZ0_9CHLO) HSP 1 Score: 72.0 bits (175), Expect = 3.690e-10 Identity = 59/198 (29.80%), Postives = 89/198 (44.95%), Query Frame = 2
Query: 821 AGLACLKAGMLEKGCEYYTAAADLSPPSSR-TWPLGVVLYYLGRYEEAAVRLDTDIRSFEKQFEECATDERIWQAAAWIRGAREAGADVEQVAAALPPLPIS-EPNALRRTVYNMFRGGATPEDVQQVAKVGAGGIDYFGVD-FFSEVFLGLYHDAHGNELEAETYILAACGNTYPN-PDDLWYHTPRIHAKARNWTI 1402
+G+ + +E E + +L+P W G+ LYYLGRY E A + D+ T+E IW ++ A+ G D A + L + +P + R Y FR G P AK+ A D G D F+ +++GL+H+AHGN EA+ I+AA Y D R+H + RNW +
Sbjct: 111 SGMNKFRLNQVEASVEDFDRVIELAPQMRPYMWQRGLSLYYLGRYAEGAEQFRVDVAVNPND-----TEESIWT---FLCEAQMVGPDQ----ARMQFLEVGRDPRPVMRAAYECFRTGELP------AKIMAQVSDNGGHDTFYGLLYVGLWHEAHGNATEAKKAIVAAVQTPYARLSGDYMASLARVHCQRRNWEL 290
BLAST of mRNA_Ecto-sp13_S_contig1942.6233.1 vs. uniprot
Match: A0A6M0EVX6_9CYAN (Uncharacterized protein n=4 Tax=Cyanobacteria TaxID=1117 RepID=A0A6M0EVX6_9CYAN) HSP 1 Score: 69.7 bits (169), Expect = 5.900e-10 Identity = 52/194 (26.80%), Postives = 88/194 (45.36%), Query Frame = 2
Query: 824 GLACLKAGMLEKGCEYYTAAADLSPPS-SRTWPLGVVLYYLGRYEEAAVRLDTDIRSFEKQFEECATDERIWQ--AAAWIRGAREAGADVEQVAAALPPLPISEPNALRRTVYNMFRGGATPEDVQQVAKVGAGGIDYFGVDFFSEVFLGLYHDAHGNELEAETYILAACGNTYPNPDDLWYHTPRIHAKARNW 1396
G+A K +++ + A L+P W G+ YY R+EE A + D+ + EE +W+ A ++G EA + V ++P ++ R+VY +F G T EDV V + + F+S +++GL+++A + + A YI+ A N Y D +W H R+H R W
Sbjct: 32 GMANFKLAKIDESIRDFDHAEKLNPKVLPYLWQRGLSYYYAERFEEGARQFQLDLSVNPQDVEET-----VWRYLCIARLKGVAEARNSLLAVK--------NDPRSVMRSVYGLFAGNCTREDVLAVGEK-----ESIRGKFYSNLYIGLHYEAQADSIHAREYIVRAA-NDYQLDDYMW-HLARVHQALRGW 205
BLAST of mRNA_Ecto-sp13_S_contig1942.6233.1 vs. uniprot
Match: A0A252EBR8_9NOSO (Uncharacterized protein n=3 Tax=unclassified Nostoc TaxID=2593658 RepID=A0A252EBR8_9NOSO) HSP 1 Score: 68.2 bits (165), Expect = 1.990e-9 Identity = 54/193 (27.98%), Postives = 92/193 (47.67%), Query Frame = 2
Query: 824 GLACLKAGMLEKGCEYYTAAADLSPP-SSRTWPLGVVLYYLGRYEEAAVRLDTDIRSFEKQFEECATDERIWQAAAWIRGAREAGADVEQVAAALPPLPISEPNALRRTVYNMFRGGATPEDVQQVAKV-GAGGIDYFGVDFFSEVFLGLYHDAHGNELEAETYILAACGNTYPNPDDLWYHTPRIHAKARNW 1396
G+ + +++ + + A L P W G+ YY R+ E A + D+ + EE +W+ ++ AR +G VE +L + ++P + R+VY+++ G TP+DV V K G G +F+S ++LGLY++A N A+ YI+ A N Y D +WY ++H R W
Sbjct: 32 GMVNFQLAKIDESIQDFDTAEQLDPRLKPYLWQRGLSYYYAERFAEGAQQFKIDLTVNAQDVEET-----VWR---YLCIARLSG--VESARNSLLTVK-NDPRRIMRSVYDLYAGNCTPDDVLNVGKSEGVKG------NFYSHLYLGLYYEAENNLELAQEYIVKAADN-YKIDDYMWY-LAQVHKNLRKW 205
BLAST of mRNA_Ecto-sp13_S_contig1942.6233.1 vs. uniprot
Match: A0A8J4EVV0_9CHLO (Uncharacterized protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4EVV0_9CHLO) HSP 1 Score: 68.9 bits (167), Expect = 4.280e-9 Identity = 52/196 (26.53%), Postives = 81/196 (41.33%), Query Frame = 2
Query: 821 AGLACLKAGMLEKGCEYYTAAADLSPPSSR-TWPLGVVLYYLGRYEEAAVRLDTDIRSFEKQFEECATDERIWQ--AAAWIRGAREAGADVEQVAAALPPLPISEPNALRRTVYNMFRGGATPEDVQQVAKVGAGGIDYFGVDFFSEVFLGLYHDAHGNELEAETYILAACGNTYPN-PDDLWYHTPRIHAKARNW 1396
+G+ + +E E + L+P W G+ LYYLGRY E A + D+ T+E IW A + G +A +V +P + R Y FR G P+ + G ++G+ +++GL+H+AHG+ EA+ I AA Y D R+H + RNW
Sbjct: 120 SGMDKFRRNQVEASVEDFDRVVQLAPQMRPYMWQRGLSLYYLGRYAEGAEQFRVDVAVNPND-----TEESIWTFLCEAQMVGPEQARMQFLEVG--------RDPRPVMRAAYECFRTGELPDKIMAQVSDNGGHDTFYGL-----LYVGLWHEAHGDTTEAKKAITAAVQTPYARLSGDYMASLARVHCQRRNW 297 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1942.6233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1942.6233.1 >prot_Ecto-sp13_S_contig1942.6233.1 ID=prot_Ecto-sp13_S_contig1942.6233.1|Name=mRNA_Ecto-sp13_S_contig1942.6233.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=309bp MRVVTVRVTQAASLVRARVTTSCTYRRPQTVDDLHASMSCPTVHKTDCCAback to top mRNA from alignment at Ecto-sp13_S_contig1942:6876..9835- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1942.6233.1 ID=mRNA_Ecto-sp13_S_contig1942.6233.1|Name=mRNA_Ecto-sp13_S_contig1942.6233.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2960bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1942:6876..9835- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1942:6876..9835- >mRNA_Ecto-sp13_S_contig1942.6233.1 ID=mRNA_Ecto-sp13_S_contig1942.6233.1|Name=mRNA_Ecto-sp13_S_contig1942.6233.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=927bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1942:6876..9835- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |