mRNA_Ecto-sp13_S_contig19419.6231.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19419.6231.1
Unique NamemRNA_Ecto-sp13_S_contig19419.6231.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig19419.6231.1 vs. uniprot
Match: D7FHH4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH4_ECTSI)

HSP 1 Score: 330 bits (846), Expect = 2.520e-109
Identity = 165/172 (95.93%), Postives = 166/172 (96.51%), Query Frame = 1
Query:    1 GKRVAVVDKKDLLGGVCVHTGTIPSKTREAVLHLTGYRHQGFYGRSYKKTISMPDLLSRVKKVEGAETDVVTDQLRREGVEIITGTARFVESDSGDSRVSAMVLRSSGDEHEAASSPYRHVGADTPKSVISAERFLVACGTRPVRPPDIPFDGTHIFDSDQLLWGGVTHIPR 516
            GKRVAVVDKKDLLGGVCVHTGTIP   REAVLHLTGYRHQGFYGRSYKKTISMPDLLSRVKKVE AETDVVTDQL REGVEIITGTARFVESDSGDSRVSAMVLRS GDEHEAASSPYRHVGADTPKSVISAERFLVACGTRPVRPPDIPFDGTHIFDSDQLLWGG+THIPR
Sbjct:   15 GKRVAVVDKKDLLGGVCVHTGTIP---REAVLHLTGYRHQGFYGRSYKKTISMPDLLSRVKKVEAAETDVVTDQLSREGVEIITGTARFVESDSGDSRVSAMVLRSLGDEHEAASSPYRHVGADTPKSVISAERFLVACGTRPVRPPDIPFDGTHIFDSDQLLWGGITHIPR 183          
BLAST of mRNA_Ecto-sp13_S_contig19419.6231.1 vs. uniprot
Match: A0A6H5JP49_9PHAE (Pyr_redox_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP49_9PHAE)

HSP 1 Score: 287 bits (734), Expect = 5.000e-96
Identity = 140/146 (95.89%), Postives = 144/146 (98.63%), Query Frame = 1
Query:   79 TREAVLHLTGYRHQGFYGRSYKKTISMPDLLSRVKKVEGAETDVVTDQLRREGVEIITGTARFVESDSGDSRVSAMVLRSSGDEHEAASSPYRHVGADTPKSVISAERFLVACGTRPVRPPDIPFDGTHIFDSDQLLWGGVTHIPR 516
            +REAVLHLTGYRHQGFYGRSYKKTISMPDLLSRVKKVEGAETDVVTDQL REGVEIITGTARFV+SDSGDSR+SAMVLRS GDEHEAASSPYRHVGADTPKSVISAERFLVACGTRPVRPPDIPFDGTHIFDSDQLLWGG+THIPR
Sbjct:    5 SREAVLHLTGYRHQGFYGRSYKKTISMPDLLSRVKKVEGAETDVVTDQLSREGVEIITGTARFVKSDSGDSRMSAMVLRSLGDEHEAASSPYRHVGADTPKSVISAERFLVACGTRPVRPPDIPFDGTHIFDSDQLLWGGITHIPR 150          
BLAST of mRNA_Ecto-sp13_S_contig19419.6231.1 vs. uniprot
Match: A0A835ZER9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZER9_9STRA)

HSP 1 Score: 227 bits (578), Expect = 2.160e-68
Identity = 115/184 (62.50%), Postives = 140/184 (76.09%), Query Frame = 1
Query:    1 GKRVAVVDKKDLLGGVCVHTGTIPSKT-REAVLHLTGYRHQGFYGRSY---KKTISMPDLLSRVKKVEGAETDVVTDQLRREGVEIITGTARFVESDSGDS--------RVSAMVLRSSGDEHEAASSPYRHVGADTPKSVISAERFLVACGTRPVRPPDIPFDGTHIFDSDQLLWGGVTHIPR 516
            G+RVAVVDK  ++GGVCVHTGTIPSKT REAVLHLTG+RHQGFYGR+Y   ++ IS+PDLL RV+KVE  ETD+V DQ+RREGVE+ITGTARF E+D  D+         V  MVL++    HE+ +S YRH+ A+  K  +SAE  L+ACGTRP+RP  IPFDG  +FDSDQLLWGGV  +PR
Sbjct:   78 GRRVAVVDKLGMIGGVCVHTGTIPSKTFREAVLHLTGFRHQGFYGRAYQPWRERISVPDLLLRVQKVEKTETDIVVDQMRREGVEVITGTARFAEADEDDAFTDATSEGAVRVMVLKTDA-SHESEASAYRHLDANMAKMALSAENVLIACGTRPLRPAHIPFDGVRVFDSDQLLWGGVRDVPR 260          
BLAST of mRNA_Ecto-sp13_S_contig19419.6231.1 vs. uniprot
Match: D7FKJ5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKJ5_ECTSI)

HSP 1 Score: 212 bits (539), Expect = 1.940e-62
Identity = 108/176 (61.36%), Postives = 136/176 (77.27%), Query Frame = 1
Query:    1 GKRVAVVDKKDLLGGVCVHTGTIPSKT-REAVLHLTGYRHQGFYGRSYKKT---ISMPDLLSRVKKVEGAETDVVTDQLRREGVEIITGTARFVESDSGDSRVSAMVLRSSGDEHEAASSPYRHVGADTPKSVISAERFLVACGTRPVRPPDIPFDGTHIFDSDQLLWGGVTHIPR 516
            GK V +VDK   LGGVCVHTGTIPSKT REAVLHLTG+RHQGFYGRS ++    +++PD+L+RV   E  ET+VV DQL+REG+E+I+GTARF+    G+     MVLR+S ++ EA +S YRH+ A  P   +SA+RFLVACGTRP+R PD+PFDG+ +FDSDQLLWGGV  +PR
Sbjct:   65 GKSVCIVDKSSQLGGVCVHTGTIPSKTFREAVLHLTGWRHQGFYGRSSQRARAAVAIPDVLARV---EAKETEVVRDQLQREGIELISGTARFLPGSEGEPH-RVMVLRTS-EKTEAKTSVYRHIEASLPSVTLSADRFLVACGTRPLRRPDVPFDGSRVFDSDQLLWGGVDRVPR 235          
BLAST of mRNA_Ecto-sp13_S_contig19419.6231.1 vs. uniprot
Match: A0A662X7S1_9STRA (Pyr_redox_2 domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X7S1_9STRA)

HSP 1 Score: 202 bits (513), Expect = 5.280e-62
Identity = 106/175 (60.57%), Postives = 127/175 (72.57%), Query Frame = 1
Query:    1 GKRVAVVDKKDLLGGVCVHTGTIPSKT-REAVLHLTGYRHQGFYG--RSYKKTISMPDLLSRVKKVEGAETDVVTDQLRREGVEIITGTARFVESDSGDSRVSAMVLRSSGDEHEAASSPYRHVGADTPKSVISAERFLVACGTRPVRPPDIPFDGTHIFDSDQLLWGGVTHIPR 516
            GK VAV+DK+D+LGGVCVHTGT+PSKT REA LHLTGYRH+ FY    +  K   + D+L RVKKVEGAETD+   QL R GVE+I GTARF+   SGD  + A++   S D +EAA+   RH  AD  K V++A++FLV  GTRP R PDIPFDG  IFDSDQLLWGGV  +PR
Sbjct:   80 GKSVAVIDKRDMLGGVCVHTGTVPSKTFREATLHLTGYRHRSFYNGQTAPTKRFGVEDILQRVKKVEGAETDITRHQLLRNGVELINGTARFL---SGDKNMIAVL---SNDSYEAATDAKRHSSADICKRVLTADKFLVCVGTRPARRPDIPFDGETIFDSDQLLWGGVKTVPR 248          
BLAST of mRNA_Ecto-sp13_S_contig19419.6231.1 vs. uniprot
Match: A0A4D9CNB1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CNB1_9STRA)

HSP 1 Score: 196 bits (497), Expect = 3.130e-57
Identity = 96/178 (53.93%), Postives = 127/178 (71.35%), Query Frame = 1
Query:    1 GKRVAVVDKKDLLGGVCVHTGTIPSKT-REAVLHLTGYRHQGFYGRSY---KKTISMPDLLSRVKKVEGAETDVVTDQLRREGVEIITGTARFVESDSGDSRVSAMVLRSSGDEHEAASSPYRHVGADTPKSVISAERFLVACGTRPVRPPDIPFDGTHIFDSDQLLWGGVTHIPRLF 522
            G+RVA++DK   +GGVCVHTGTIPSKT REAVLHLTGYRHQGFYG+S     +  SM ++L RV+KVE  E +V   Q+RR GV ++TGTARF+E+ + D+ V   VL +  D  +     Y+H  A  PK++++AE+ ++ACGTRPVR  +  FDG  +FDSDQLLWGG+  +PR F
Sbjct:   81 GRRVAMIDKNSQMGGVCVHTGTIPSKTFREAVLHLTGYRHQGFYGKSTFTSSRRSSMNEILQRVQKVEDVEAEVTRHQMRRNGVHLVTGTARFLENGANDAHVKLAVLLT--DPEQERKGIYKHREASLPKTLLTAEKVMIACGTRPVRQEETVFDGKRVFDSDQLLWGGIDRVPRSF 256          
BLAST of mRNA_Ecto-sp13_S_contig19419.6231.1 vs. uniprot
Match: A0A3R7H1X6_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7H1X6_9STRA)

HSP 1 Score: 194 bits (494), Expect = 3.190e-56
Identity = 101/177 (57.06%), Postives = 127/177 (71.75%), Query Frame = 1
Query:    1 GKRVAVVDKKDLLGGVCVHTGTIPSKT---REAVLHLTGYRHQGFYGR--SYKKTISMPDLLSRVKKVEGAETDVVTDQLRREGVEIITGTARFVESDSGDSRVSAMVLRSSGDEHEAASSPYRHVGADTPKSVISAERFLVACGTRPVRPPDIPFDGTHIFDSDQLLWGGVTHIPR 516
            GK VA+VDK+D+LGGVCVHTGT+PSK    REA +HLTGYRH+ FY       K I + D+L RVKKVE AETD+   QL+R GV++I+GTARF+   +GDS + A++   S +E+E A+   RH  AD  K V++A++FLV  GTRP R PDIPFDG  IFDSDQLLWG V  +PR
Sbjct:   78 GKSVAIVDKRDMLGGVCVHTGTVPSKASTFREAAMHLTGYRHRAFYNGHGGISKRIGVEDILQRVKKVEAAETDITRHQLQRNGVQLISGTARFL---AGDSHMLAVL---SNEEYETATDAKRHTEADICKRVLTADKFLVCVGTRPARHPDIPFDGETIFDSDQLLWGKVKMVPR 248          
BLAST of mRNA_Ecto-sp13_S_contig19419.6231.1 vs. uniprot
Match: A0A6A3FH22_9STRA (Putative soluble pyridine nucleotide transhydrogenase n=16 Tax=Phytophthora TaxID=4783 RepID=A0A6A3FH22_9STRA)

HSP 1 Score: 189 bits (481), Expect = 2.340e-54
Identity = 97/175 (55.43%), Postives = 120/175 (68.57%), Query Frame = 1
Query:    1 GKRVAVVDKKDLLGGVCVHTGTIPSKT-REAVLHLTGYRHQGFYGRSY--KKTISMPDLLSRVKKVEGAETDVVTDQLRREGVEIITGTARFVESDSGDSRVSAMVLRSSGDEHEAASSPYRHVGADTPKSVISAERFLVACGTRPVRPPDIPFDGTHIFDSDQLLWGGVTHIPR 516
            GK VA++DK+D++GGVCVHTGT+PSKT REA LHLTGYRH+ FY       K   + D+L RVKKVE AETD+   QL R GV++I GTARF+  ++       MV   S + +E A+   RH  AD  K V++A++FLV  GTRP R PDIPFDG  IFDSDQLLWG V  +PR
Sbjct:   78 GKSVAIIDKRDMMGGVCVHTGTVPSKTFREAALHLTGYRHKAFYNGQAGPSKRFGVEDILQRVKKVEDAETDITRHQLMRNGVQLINGTARFLPGNNH------MVAVLSNESYETATDAKRHTSADICKRVLTADKFLVCVGTRPARRPDIPFDGETIFDSDQLLWGKVKTVPR 246          
BLAST of mRNA_Ecto-sp13_S_contig19419.6231.1 vs. uniprot
Match: A0A5D6XJI3_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XJI3_9STRA)

HSP 1 Score: 188 bits (478), Expect = 5.200e-54
Identity = 99/175 (56.57%), Postives = 120/175 (68.57%), Query Frame = 1
Query:    1 GKRVAVVDKKDLLGGVCVHTGTIPSKT-REAVLHLTGYRHQGFYG--RSYKKTISMPDLLSRVKKVEGAETDVVTDQLRREGVEIITGTARFVESDSGDSRVSAMVLRSSGDEHEAASSPYRHVGADTPKSVISAERFLVACGTRPVRPPDIPFDGTHIFDSDQLLWGGVTHIPR 516
            GK VAV+DK+D+LGGVC+HTGT+PSKT REA LHLT YRH+ FY    S  K   + D+L RVKKVE AETD+   QL R GVE+I GTARF+ S   +     MV   S D +  A+   RH  A   K V++A++FL+A GTRP R PDIPFDG  IFDSDQLLWGGV  +P+
Sbjct:   68 GKSVAVIDKRDMLGGVCIHTGTVPSKTFREATLHLTAYRHRSFYDGHSSPGKRFGIEDILQRVKKVEHAETDITRHQLLRNGVELINGTARFLPSPDKN-----MVAVLSNDSYMTATDAKRHSSASICKRVLTADKFLIAVGTRPARRPDIPFDGETIFDSDQLLWGGVKTVPK 237          
BLAST of mRNA_Ecto-sp13_S_contig19419.6231.1 vs. uniprot
Match: K3WL68_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WL68_GLOUD)

HSP 1 Score: 187 bits (475), Expect = 1.540e-53
Identity = 96/175 (54.86%), Postives = 120/175 (68.57%), Query Frame = 1
Query:    1 GKRVAVVDKKDLLGGVCVHTGTIPSKT-REAVLHLTGYRHQGFYG--RSYKKTISMPDLLSRVKKVEGAETDVVTDQLRREGVEIITGTARFVESDSGDSRVSAMVLRSSGDEHEAASSPYRHVGADTPKSVISAERFLVACGTRPVRPPDIPFDGTHIFDSDQLLWGGVTHIPR 516
            GK VA++DK+D+ GGVCVHTGT+PSKT REA LHLT YRH+ FY    S  K   + D+L RVKKVE AETD+   QL R GVE+I GTARF+   + +     M+   S D +  A+   RH  AD  K V++A++FL+A GTRP R PDIPFDG  +FDSDQLLWGGV  +P+
Sbjct:   72 GKSVAIIDKRDMHGGVCVHTGTVPSKTFREATLHLTAYRHRSFYDGQSSPTKRFGIEDILQRVKKVEHAETDITRHQLLRNGVELINGTARFLPDANKN-----MIAVLSNDSYTTATDAKRHASADICKRVLTADKFLIAVGTRPARRPDIPFDGQAVFDSDQLLWGGVKTVPK 241          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19419.6231.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHH4_ECTSI2.520e-10995.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JP49_9PHAE5.000e-9695.89Pyr_redox_2 domain-containing protein n=1 Tax=Ecto... [more]
A0A835ZER9_9STRA2.160e-6862.50Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FKJ5_ECTSI1.940e-6261.36Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A662X7S1_9STRA5.280e-6260.57Pyr_redox_2 domain-containing protein (Fragment) n... [more]
A0A4D9CNB1_9STRA3.130e-5753.93Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A3R7H1X6_9STRA3.190e-5657.06Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A6A3FH22_9STRA2.340e-5455.43Putative soluble pyridine nucleotide transhydrogen... [more]
A0A5D6XJI3_9STRA5.200e-5456.57Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
K3WL68_GLOUD1.540e-5354.86Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19419contigEcto-sp13_S_contig19419:204..3194 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score332.0
Seed ortholog evalue1.7e-88
Seed eggNOG ortholog2880.D7FHH4
Model size528
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.dihydrolipoyl dehydrogenase activity
EggNOG OGsCOG1249@1,KOG1335@2759
Ec32 ortholog descriptionFAD/NAD-linked reductase, dimerisation domain
Ec32 orthologEc-25_002380.1
Cds size528
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462985.5452394-CDS-Ecto-sp13_S_contig19419:203..2971681462985.5452394-CDS-Ecto-sp13_S_contig19419:203..297Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19419 204..297 -
1681462985.5562456-CDS-Ecto-sp13_S_contig19419:797..9681681462985.5562456-CDS-Ecto-sp13_S_contig19419:797..968Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19419 798..968 -
1681462985.565826-CDS-Ecto-sp13_S_contig19419:1566..16531681462985.565826-CDS-Ecto-sp13_S_contig19419:1566..1653Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19419 1567..1653 -
1681462985.5759795-CDS-Ecto-sp13_S_contig19419:1942..20381681462985.5759795-CDS-Ecto-sp13_S_contig19419:1942..2038Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19419 1943..2038 -
1681462985.593907-CDS-Ecto-sp13_S_contig19419:3114..31941681462985.593907-CDS-Ecto-sp13_S_contig19419:3114..3194Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19419 3115..3194 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19419.6231.1prot_Ecto-sp13_S_contig19419.6231.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19419 204..3194 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19419.6231.1

>prot_Ecto-sp13_S_contig19419.6231.1 ID=prot_Ecto-sp13_S_contig19419.6231.1|Name=mRNA_Ecto-sp13_S_contig19419.6231.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=176bp
GKRVAVVDKKDLLGGVCVHTGTIPSKTREAVLHLTGYRHQGFYGRSYKKT
ISMPDLLSRVKKVEGAETDVVTDQLRREGVEIITGTARFVESDSGDSRVS
AMVLRSSGDEHEAASSPYRHVGADTPKSVISAERFLVACGTRPVRPPDIP
FDGTHIFDSDQLLWGGVTHIPRLFF*
back to top

mRNA from alignment at Ecto-sp13_S_contig19419:204..3194-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19419.6231.1 ID=mRNA_Ecto-sp13_S_contig19419.6231.1|Name=mRNA_Ecto-sp13_S_contig19419.6231.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2991bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19419:204..3194- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCAAGCGGGTAGCGGTCGTCGATAAGAAGGACCTCTTGGGAGGCGTTTG CGTGCACACCGGGACCATCCCCAGCAAAACGTTCAGGTAAGTATTTTTTG CGTGACCGAAAAGTCAGAGCTGGCGAGTCGACCTTCCTCGGAAGGGAAAT GCCGGGTCGTGTGGACCCAACGACTTACTTTTTTAGCGACAGACCGCTAC AGTTTTTCGCGCTCGATGCCCGCCCTACTCAAGGAGAAAGCTATGACAAG ATTGTTTCTAGATGTAAGGGGAAAAAGAATAGCGGCGAAACCTTGGCTCA CATTTTGTAGGCGTTCGCTTCGGCGTCTCTCGCTTCCTTCTGCCTCGCTT TGTCGGATTTGTTTGACTTCGTCTTTCGAAATTTTATTTTTACATGATAC GGTAGTGGTCCCGCTATAACGCAGGTGAAATCGTCTGGCATAGATGGTCT CCGAATAATACCGGTTGCCGGCTATGATGCCGGTTCAGGGGCTGGCACCT ACCCCCAATAAACCGGAACCAGTACTGTATTTACATACAATCACAATAAG TCTGTCCGTTCGAGATATTTCCACAGGGGATCCGTTGAAATCTTTGCAGC GACTCTTTTGTTCTTGTACCATATTCTGTCCGTCCACGCCGCGAATATCC CGGTATTCCACGCCCGTTGCCCTTTCTGGTGGAGGTTTGCGTGGCCAGTA CGATGCAATGGCGATTTAGTCACCGCTGGGTGGTGATTGCCTTCTCACTT CTGCTCCTGCTGTCGGTATCCGTGTTTTCGCTCGGGGATGGGGGGGGCGT ACTCATGATTTGTTTGCCTCCACGGTTAGAGCATTGACCACGCGTCCTCG AGAGGACGGAGCATTATTCCCACAAGACCGAACCACGGATGGCTAATCAT GCCTTAGCTGTTAGCCCACGCGTCCTCGAGAGAGGTAGCACTGTTCCCAC AGGCCCGATCACCGATGGCCAATTGCTCCTTCCTACCTTGCCAAAGGTGG CTCAAAGTATTCTCCGTATCCTGTCTTTGTCTATCCCAACACTTTCTTAC CGATGGCCAATCATTCTCGCCCCAAAGGTGACTCAAAAACTATTCCCCTG TGCTATCTGCTGTCTATCCAAACACTACTATCTATCCTGTCGATGTCTCT TGCGAGCAGGGAGGCGGTTTTGCACTTGACGGGGTACAGACACCAGGGAT TCTACGGGCGATCGTACAAGAAGACCATCAGCATGCCCGACCTGCTCTCG AGGTACAGCGGGTTGTTTCATTTTTTTTTTGGTGGTGGTGACGGTGGTGG TGACGGTGGTGGTGGCGTTGGTGATAGTGTTTTGGCCGTGGTGGTAGTAT TGTTGCTGCTGCTGCTGCTGCTGCTGCGGCGGCGGCGGCGGCGGCTGCTG CTGCTGCTTTGGCCTCAACAGCGTCGTACGCTGTTTTTTCTGCCAAAAAT TTGCACATTGCACCACATTTGAAATGCCATCCCGCAGACGCACTTAACGC CCGTGAACCCCCCCCCTGCCTCGCCCTGTCTTGTAACGTAGAGTGAAGAA GGTGGAGGGAGCGGAGACCGATGTCGTAACCGACCAGCTCAGAAGGGAGG GCGTGGAAATCATCACGGGAACGGCACGGTGGGTGCTTGCTCGTCACGAC GAAATGTGTTTGAAGTTTCCAAGCGCAACATGGTGTTTCTTCTGAGGACA AGTCGTATGAAGCACGAGGGAGCAACGCGCTTTGGCTCGCGAAGGGTAGC ATTGAGGGGGGTGTAACATGCACGGGGCAGAGTCGCCACGGAACAACGAG CGATATCACACCATGCTCGCAAAAAAAAATGTGGGGTGCGGAGGCGTAGC ACTTGCCTACACGTGGGGGGCGCGCAAAAGGAAGCAACGAAATTGTTTCA CGTGCAATCGTGCCCCCGTGCAAACCTCCTTCGCAGTCGTACAGCGGTGT TTGTCTTGCTTTGATTGCCTGCGTGGAGGAGCACGGGTGTAGATAGCAAG GACGCAGCACCCCACCAAATCGAAATCCGATATCGCATCCACGGATCCTG ATATGTATCAATTTTGTGGTGTGGTTTCGGTGCCAAGCCCAAAACGGAAG GGGATTTTCTCGCAATTTTTCCTGTGGTTATTGACGTCAGGCTCGTCATA AAACTACCGCCCTTTCTCAAAACTCACTCGACTACTACCGCTGCGTGTGC ACGCCTTTTCTATTGGCAACCAACAGGTTTGTGGAGTCGGACAGCGGTGA CTCCAGAGTGTCGGCGATGGTACTGAGGTCGTCGGGCGACGAACACGAGG CTGCCAGCTCTCCGTACCGTCACGTCGGGGCGGACACGCCCAAGTCGGTC ATATCGGCCGAGCGTTTTCTCGTGGCGTGCGGGACGCGACCCGTACGGTG AGGGGGGGATGCGGGGGGCGGGGGGAGGGGGGGGGTTCGCACGTGAACGT TCGAGAAACAAAGCGTTGTTGGGTTGTCTAGGCGTCAAGAGCGAGTCAGA CAGACGCCCGATTTGTCTTCACCTCGCCGCCTGCCACGCGGTGGTGGTTT GTTGCAGTTCTTGGTTGTTCAGCCTCTGGGCCGCCCACAGGTCCACGCTC TTGCGCACGGTAGCTGATTTCATCGCCGCGCACATAGAAGCGAAAATCGT CACCAGGCGGACAGCGGTCGTTTTTTTTTTCCCGGAACCAGCCTGTAGGC TGGCTATCCGTTATCTTGCTCTTGCCGGTGGCAGTACTAGCGGTGATGGT CCGTGCTGCTTATTTCTCTTCGCGCTGTCGTTTTTGCTTTAGATCGCTGC TCAGCGGTCTCTGCTCGGCCGTTTGCTCATCCATGGGCCGCGGTCGTTTC TGTTTTTTGTTTGTGCTCACCTCCCCCTTGCCTGTTCGTGGTCGCAGGCC CCCCGACATTCCCTTCGACGGGACGCATATTTTCGACTCGGATCAGCTTC TCTGGGGAGGCGTCACGCACATTCCCAGGTTATTTTTTTAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19419:204..3194-

>mRNA_Ecto-sp13_S_contig19419.6231.1 ID=mRNA_Ecto-sp13_S_contig19419.6231.1|Name=mRNA_Ecto-sp13_S_contig19419.6231.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=528bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19419:204..3194- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCAAGCGGGTAGCGGTCGTCGATAAGAAGGACCTCTTGGGAGGCGTTTG
CGTGCACACCGGGACCATCCCCAGCAAAACCAGGGAGGCGGTTTTGCACT
TGACGGGGTACAGACACCAGGGATTCTACGGGCGATCGTACAAGAAGACC
ATCAGCATGCCCGACCTGCTCTCGAGAGTGAAGAAGGTGGAGGGAGCGGA
GACCGATGTCGTAACCGACCAGCTCAGAAGGGAGGGCGTGGAAATCATCA
CGGGAACGGCACGGTTTGTGGAGTCGGACAGCGGTGACTCCAGAGTGTCG
GCGATGGTACTGAGGTCGTCGGGCGACGAACACGAGGCTGCCAGCTCTCC
GTACCGTCACGTCGGGGCGGACACGCCCAAGTCGGTCATATCGGCCGAGC
GTTTTCTCGTGGCGTGCGGGACGCGACCCGTACGGCCCCCCGACATTCCC
TTCGACGGGACGCATATTTTCGACTCGGATCAGCTTCTCTGGGGAGGCGT
CACGCACATTCCCAGGTTATTTTTTTAG
back to top