mRNA_Ecto-sp13_S_contig19416.6230.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19416.6230.1
Unique NamemRNA_Ecto-sp13_S_contig19416.6230.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19416.6230.1 vs. uniprot
Match: A0A6H5JZN0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZN0_9PHAE)

HSP 1 Score: 684 bits (1764), Expect = 2.630e-239
Identity = 391/498 (78.51%), Postives = 401/498 (80.52%), Query Frame = 1 
Query:    1 DGTPLPPLRPTLSPSPSSASSCSVDDDRPLSPDGDQAALLASTTRRKRSRSWSNSSSPTSTGSKTANNNRPCRRPAIRTANSGDDCYRDCGGPTRGEEVGDGPTRGHNGQDLQRLGGDHVGNGGCSPVTEETPLDARKGREKKSGGSPGSDALSPGPAVEANGSGVGSSSLPDEGEEGTAAADKPTSRVLVSDGQRADRQRTSGARGKXXGAGTASGETINGESWCAGGAGDGEEGVEVTQGAQQPHQAVRVVVHEVLSEDFGLFTWPSGVVLACLVWARRREFDGASVVEIGAGTALPGLLAAKLGASVVLTDREEAPWVLDNMRGAVAENGLNRGPPDDASPDIGTATAETAGADTVSAAARAIAGGGSGPSIDAAAAPAAGAAAGG--------------W--------------------------SFPRNQEQGTTREGRVGGTTRLGHCSVQGLSWGSVGAAAIKLARERRPQVVLGADVFYSSEHFNDVLA 1374
            D T LPPLRPTLS SPSSASSCSVDDDRPLSP GDQAALLAS TRRKRSRSWSNSSSPTSTGSKTAN+NRP RRPAI T NSGD CYR CGGP RGEE GDGPTRGHNGQDLQRLGGD VG+GGCSPVTEETPLDA KGRE+ SGGSPGSDALSPGPAVE NG GVGSSSLPD GEEGTA+ADKP+SRVLVSDGQRADR RTSGARGK  GAGTA GETI GESWCAGG GDGEEGVEV                  LSEDFGLFTWPSGVVLACL+WARRREFDGASVVEIGAGTALPGLLAAKLGASVVLTDREEAPWVLDNMRGAVA NGLN GPPDDASP IGTATAET  A+TV AA  AIA GG GPS  AA APA+GAA GG              W                          SFPR+QE+GTTREGRVGGTTRLG CSVQGLSWGSVGAAAIKLARERRPQVVLGADVFYSSEHFNDVLA
Sbjct:   54 DRTLLPPLRPTLSSSPSSASSCSVDDDRPLSPGGDQAALLASNTRRKRSRSWSNSSSPTSTGSKTANHNRPRRRPAIGTTNSGDSCYRGCGGPIRGEEGGDGPTRGHNGQDLQRLGGDQVGDGGCSPVTEETPLDAHKGREEGSGGSPGSDALSPGPAVETNGPGVGSSSLPDGGEEGTASADKPSSRVLVSDGQRADRHRTSGARGKGAGAGTARGETIKGESWCAGGEGDGEEGVEV------------------LSEDFGLFTWPSGVVLACLIWARRREFDGASVVEIGAGTALPGLLAAKLGASVVLTDREEAPWVLDNMRGAVAANGLNLGPPDDASPAIGTATAETVSAETVCAAVPAIADGGGGPSTGAAPAPASGAAMGGCVKEWQSKDKRMGAWEPDGRGTGGYSSLAPSVAATAAAGAESFPRDQEKGTTREGRVGGTTRLGRCSVQGLSWGSVGAAAIKLARERRPQVVLGADVFYSSEHFNDVLA 533
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19416.6230.1 vs. uniprot
Match: D7FU39_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU39_ECTSI)

HSP 1 Score: 578 bits (1489), Expect = 1.640e-199
Identity = 330/458 (72.05%), Postives = 338/458 (73.80%), Query Frame = 1 
Query:    1 DGTPLPPLRPTLSPSPSSASSCSVDDDRPLSPDGDQAALLASTTRRKRSRSWSNSSSPTSTGSKTANNNRPCRRPAIRTANSGDDCYRDCGGPTRGEEVGDGPTRGHNGQDLQRLGGDHVGNGGCSPVTEETPLDARKGREKKSGGSPGSDALSPGPAVEANGSGVGSSSLPDEGEEGTAAADKPTSRVLVSDGQRADRQRTSGARGKXXGAGTASGETINGESWCAGGAGDGEEGVEVTQGAQQPHQAVRVVVHEVLSEDFGLFTWPSGVVLACLVWARRREFDGASVVEIGAGTALPGLLAAKLGASVVLTDREEAPWVLDNMRGAVAENGLNRGPPDDASPDIGTATAETAGADTVSAAARAIAGGGSGPSIDAAAAPAAGAAAGGWSFPRNQEQGTTREGRVGGTTRLGHCSVQGLSWGSVGAAAIKLARERRPQVVLGADVFYSSEHFNDVLA 1374
            DGTPLPPLRPTLSPSPSSASSCSVDDDRPLSP GDQAALLASTTRRKRSRSWSNSSSPT TGSKTANNNRPCRRPAIRTANSGDDCYR CGGP RGE  GDGPTRGH GQDLQRLGGD VG+GGCSPVT+ETPLDARK RE+ SGGSPGSDALSPG AVEANG GVGSSS PDEG EGTAAADKPTSRV VSDGQRADRQRT GARGK  GAG A GE I G S CAGG GDGEEGVEVT+GA+Q HQAVRVVVHEVLSEDFGLFTWPSGVVLACLVWARRREFDGASVVEIGAGTALPGLLAAK                                                                                           E+G TR+GR+GG TRLG CSVQGLSWGSVGAAAIKLARERRPQVVLGADVFYSSEHFNDVLA
Sbjct:   38 DGTPLPPLRPTLSPSPSSASSCSVDDDRPLSPGGDQAALLASTTRRKRSRSWSNSSSPTYTGSKTANNNRPCRRPAIRTANSGDDCYRGCGGPIRGEGGGDGPTRGHYGQDLQRLGGDQVGDGGCSPVTDETPLDARKRREEGSGGSPGSDALSPGAAVEANGPGVGSSSSPDEGGEGTAAADKPTSRVSVSDGQRADRQRTGGARGKGAGAGKARGERIKGRSRCAGGEGDGEEGVEVTRGARQQHQAVRVVVHEVLSEDFGLFTWPSGVVLACLVWARRREFDGASVVEIGAGTALPGLLAAK-------------------------------------------------------------------------------------------EKGATRDGRIGGATRLGRCSVQGLSWGSVGAAAIKLARERRPQVVLGADVFYSSEHFNDVLA 404
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19416.6230.1 vs. uniprot
Match: W1NM59_AMBTC (Uncharacterized protein n=6 Tax=Amborella trichopoda TaxID=13333 RepID=W1NM59_AMBTC)

HSP 1 Score: 102 bits (255), Expect = 2.600e-21
Identity = 48/87 (55.17%), Postives = 63/87 (72.41%), Query Frame = 1 
Query:  745 AVRVVVHEVLSEDFGLFTWPSGVVLACLVWARRREFDGASVVEIGAGTALPGLLAAKLGASVVLTDREEAPWVLDNMRGAVAENGLN 1005
            A+ V + +V+ ED+G+FTWPS VVLA  VW +R  F G +V+E+GAGTALPGL+AAK+GA V+LTD    P +LDNMR     N +N
Sbjct:   39 ALSVTIIQVMREDYGMFTWPSSVVLAEYVWQQRAHFSGRTVIELGAGTALPGLVAAKVGADVILTDSSNRPEILDNMRQTCDLNKVN 125
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19416.6230.1 vs. uniprot
Match: UPI000CD5A1B9 (methyltransferase-like protein 23 isoform X2 n=1 Tax=Capsella rubella TaxID=81985 RepID=UPI000CD5A1B9)

HSP 1 Score: 97.8 bits (242), Expect = 7.150e-20
Identity = 49/94 (52.13%), Postives = 63/94 (67.02%), Query Frame = 1 
Query:  724 GAQQPHQAVRVVVHEVLSEDFGLFTWPSGVVLACLVWARRREFDGASVVEIGAGTALPGLLAAKLGASVVLTDREEAPWVLDNMRGAVAENGLN 1005
            G +    +V V V E + E++GLF WP  V+LA  VW  R  F G+SV+E+GAGT+LPGL+AAK+GA+V+LTD    P VLDNMR     N LN
Sbjct:   15 GDEDSETSVSVSVIENMKEEYGLFVWPCSVILAEYVWQHRSRFHGSSVLELGAGTSLPGLVAAKVGANVILTDDATKPEVLDNMRRVCELNKLN 108
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19416.6230.1 vs. uniprot
Match: R0IFX2_9BRAS (Uncharacterized protein n=6 Tax=Brassicaceae TaxID=3700 RepID=R0IFX2_9BRAS)

HSP 1 Score: 97.8 bits (242), Expect = 9.390e-20
Identity = 49/94 (52.13%), Postives = 63/94 (67.02%), Query Frame = 1 
Query:  724 GAQQPHQAVRVVVHEVLSEDFGLFTWPSGVVLACLVWARRREFDGASVVEIGAGTALPGLLAAKLGASVVLTDREEAPWVLDNMRGAVAENGLN 1005
            G +    +V V V E + E++GLF WP  V+LA  VW  R  F G+SV+E+GAGT+LPGL+AAK+GA+V+LTD    P VLDNMR     N LN
Sbjct:   15 GDEDSETSVSVSVIENMKEEYGLFVWPCSVILAEYVWQHRSRFHGSSVLELGAGTSLPGLVAAKVGANVILTDDATKPEVLDNMRRVCELNKLN 108
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19416.6230.1 vs. uniprot
Match: UPI0010A55414 (methyltransferase-like protein 23 isoform X2 n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A55414)

HSP 1 Score: 94.4 bits (233), Expect = 1.310e-19
Identity = 48/93 (51.61%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:  727 AQQPHQAVRVVVHEVLSEDFGLFTWPSGVVLACLVWARRREFDGASVVEIGAGTALPGLLAAKLGASVVLTDREEAPWVLDNMRGAVAENGLN 1005
            +++P   + V+  E + ED+GLF WP  +VLA  VW +R+ F G SVVE+GAGT+LPGL+AAK+GA V LTD      VLDNMR     N LN
Sbjct:   26 SEKPDLCISVI--ENMKEDYGLFVWPCSIVLAEYVWQQRQRFSGTSVVELGAGTSLPGLVAAKVGADVTLTDDSSRLEVLDNMRKVCDLNKLN 116
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19416.6230.1 vs. uniprot
Match: A0A2K1KT47_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1KT47_PHYPA)

HSP 1 Score: 97.4 bits (241), Expect = 1.570e-19
Identity = 44/79 (55.70%), Postives = 61/79 (77.22%), Query Frame = 1 
Query:  742 QAVRVVVHEVLSEDFGLFTWPSGVVLACLVWARRREFDGASVVEIGAGTALPGLLAAKLGASVVLTDREEAPWVLDNMR 978
            Q++ V   EV+ E++GL+ WP  VVLA  +W  R+ F G+ V+E+GAGTALPG++AAK+GASVVLTDRE+ P V +NM+
Sbjct:   34 QSLDVSCSEVMQEEYGLYVWPCSVVLAEYIWQNRQRFVGSRVIELGAGTALPGVVAAKVGASVVLTDREDQPQVFENMQ 112
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19416.6230.1 vs. uniprot
Match: UPI00053C3104 (methyltransferase-like protein 23 isoform X2 n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C3104)

HSP 1 Score: 95.5 bits (236), Expect = 1.770e-19
Identity = 51/113 (45.13%), Postives = 71/113 (62.83%), Query Frame = 1 
Query:  694 DGEEGVEVT---------QGAQQPHQAVRVVVHEVLSEDFGLFTWPSGVVLACLVWARRREFDGASVVEIGAGTALPGLLAAKLGASVVLTDREEAPWVLDNMRGAVAENGLN 1005
            DGEE  ++T          G  +P  +V ++  E + E++GLF WP  ++LA  VW +R  F G+SV+E+GAGT+LPGL+AAK+GA+V LTD    P VL+NMR     N LN
Sbjct:    5 DGEEVSDMTTISQHVFSVDGDSEPAFSVSII--ENMKEEYGLFVWPCSIILAEYVWQQRSRFQGSSVLELGAGTSLPGLIAAKVGANVTLTDDSSRPEVLENMRRVCKLNDLN 115
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19416.6230.1 vs. uniprot
Match: A9RBK1_PHYPA (Uncharacterized protein (Fragment) n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9RBK1_PHYPA)

HSP 1 Score: 94.4 bits (233), Expect = 4.360e-19
Identity = 41/71 (57.75%), Postives = 57/71 (80.28%), Query Frame = 1 
Query:  766 EVLSEDFGLFTWPSGVVLACLVWARRREFDGASVVEIGAGTALPGLLAAKLGASVVLTDREEAPWVLDNMR 978
            +V+ E++GL+ WP  VVLA  +W  R+ F G+ V+E+GAGTALPG++AAK+GASVVLTDRE+ P V +NM+
Sbjct:    5 QVMQEEYGLYVWPCSVVLAEYIWQNRQRFVGSRVIELGAGTALPGVVAAKVGASVVLTDREDQPQVFENMQ 75
[Close]
BLAST of mRNA_Ecto-sp13_S_contig19416.6230.1 vs. uniprot
Match: A0A251S4E0_HELAN (Putative methyltransferase family protein n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251S4E0_HELAN)

HSP 1 Score: 96.3 bits (238), Expect = 4.380e-19
Identity = 45/78 (57.69%), Postives = 57/78 (73.08%), Query Frame = 1 
Query:  745 AVRVVVHEVLSEDFGLFTWPSGVVLACLVWARRREFDGASVVEIGAGTALPGLLAAKLGASVVLTDREEAPWVLDNMR 978
            A+ + V E + ED+GLF WP  ++LA  VW +R  F G SVVE+GAGT+LPGL+AAK+GA VVLTD  +   VLDNMR
Sbjct:   37 AISITVIESMKEDYGLFVWPCSIILAEYVWQQRSRFQGVSVVELGAGTSLPGLVAAKVGADVVLTDDSDRLEVLDNMR 114
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19416.6230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZN0_9PHAE2.630e-23978.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FU39_ECTSI1.640e-19972.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
W1NM59_AMBTC2.600e-2155.17Uncharacterized protein n=6 Tax=Amborella trichopo... [more]
UPI000CD5A1B97.150e-2052.13methyltransferase-like protein 23 isoform X2 n=1 T... [more]
R0IFX2_9BRAS9.390e-2052.13Uncharacterized protein n=6 Tax=Brassicaceae TaxID... [more]
UPI0010A554141.310e-1951.61methyltransferase-like protein 23 isoform X2 n=1 T... [more]
A0A2K1KT47_PHYPA1.570e-1955.70Uncharacterized protein n=2 Tax=Physcomitrium pate... [more]
UPI00053C31041.770e-1945.13methyltransferase-like protein 23 isoform X2 n=1 T... [more]
A9RBK1_PHYPA4.360e-1957.75Uncharacterized protein (Fragment) n=1 Tax=Physcom... [more]
A0A251S4E0_HELAN4.380e-1957.69Putative methyltransferase family protein n=1 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19416contigEcto-sp13_S_contig19416:3..3267 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score591.3
Seed ortholog evalue4e-166
Seed eggNOG ortholog2880.D7FU39
Preferred nameMETTL23
Model size1375
Hectar predicted targeting categoryother localisation
GOsGO:0003008,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006355,GO:0006357,GO:0006464,GO:0006479,GO:0006807,GO:0008134,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016278,GO:0016279,GO:0016740,GO:0016741,GO:0018022,GO:0018023,GO:0018193,GO:0018205,GO:0019219,GO:0019222,GO:0019538,GO:0031072,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032259,GO:0032501,GO:0032991,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050877,GO:0050890,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0140096,GO:1901564,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Exons5
EggNOG free text desc.lysine N-methyltransferase activity
EggNOG OGsKOG2793@1,KOG2793@2759
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-25_000750.1
Cds size1374
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462985.4600203-CDS-Ecto-sp13_S_contig19416:2..591681462985.4600203-CDS-Ecto-sp13_S_contig19416:2..59Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19416 3..59 -
1681462985.4721005-CDS-Ecto-sp13_S_contig19416:1024..11711681462985.4721005-CDS-Ecto-sp13_S_contig19416:1024..1171Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19416 1025..1171 -
1681462985.482053-CDS-Ecto-sp13_S_contig19416:1291..15461681462985.482053-CDS-Ecto-sp13_S_contig19416:1291..1546Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19416 1292..1546 -
1681462985.5021524-CDS-Ecto-sp13_S_contig19416:1841..19881681462985.5021524-CDS-Ecto-sp13_S_contig19416:1841..1988Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19416 1842..1988 -
1681462985.5138502-CDS-Ecto-sp13_S_contig19416:2499..32671681462985.5138502-CDS-Ecto-sp13_S_contig19416:2499..3267Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19416 2500..3267 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19416.6230.1prot_Ecto-sp13_S_contig19416.6230.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19416 3..3267 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19416.6230.1

>prot_Ecto-sp13_S_contig19416.6230.1 ID=prot_Ecto-sp13_S_contig19416.6230.1|Name=mRNA_Ecto-sp13_S_contig19416.6230.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=458bp
DGTPLPPLRPTLSPSPSSASSCSVDDDRPLSPDGDQAALLASTTRRKRSR
SWSNSSSPTSTGSKTANNNRPCRRPAIRTANSGDDCYRDCGGPTRGEEVG
DGPTRGHNGQDLQRLGGDHVGNGGCSPVTEETPLDARKGREKKSGGSPGS
DALSPGPAVEANGSGVGSSSLPDEGEEGTAAADKPTSRVLVSDGQRADRQ
RTSGARGKGAGAGTASGETINGESWCAGGAGDGEEGVEVTQGAQQPHQAV
RVVVHEVLSEDFGLFTWPSGVVLACLVWARRREFDGASVVEIGAGTALPG
LLAAKLGASVVLTDREEAPWVLDNMRGAVAENGLNRGPPDDASPDIGTAT
AETAGADTVSAAARAIAGGGSGPSIDAAAAPAAGAAAGGWSFPRNQEQGT
TREGRVGGTTRLGHCSVQGLSWGSVGAAAIKLARERRPQVVLGADVFYSS
EHFNDVLA
back to top

mRNA from alignment at Ecto-sp13_S_contig19416:3..3267-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19416.6230.1 ID=mRNA_Ecto-sp13_S_contig19416.6230.1|Name=mRNA_Ecto-sp13_S_contig19416.6230.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3265bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19416:3..3267- (Ectocarpus species13 EcNAP12_S_4_19m)
GACGGGACACCACTGCCACCCTTGCGGCCAACGCTATCACCATCACCATC
CTCGGCGTCGTCATGTTCGGTGGACGACGACCGTCCCCTGTCCCCTGACG
GTGATCAAGCCGCGCTCTTGGCGAGTACCACTCGACGAAAACGAAGCCGC
TCTTGGAGCAACAGCAGTAGTCCGACTTCTACCGGTAGCAAGACCGCGAA
CAACAACCGGCCGTGCCGTCGTCCGGCAATCAGGACCGCCAACAGCGGGG
ACGACTGTTATCGTGACTGCGGCGGGCCAACCAGAGGCGAAGAGGTCGGA
GACGGACCCACGAGGGGTCACAACGGACAGGACCTACAACGACTCGGAGG
GGACCATGTTGGCAACGGCGGCTGTTCGCCGGTCACCGAGGAGACGCCGC
TTGACGCGCGTAAAGGAAGAGAGAAGAAGTCTGGTGGATCACCAGGAAGC
GATGCCCTTTCACCCGGACCAGCAGTCGAGGCGAACGGATCCGGCGTTGG
ATCGTCATCCTTGCCTGACGAGGGAGAGGAGGGTACCGCTGCTGCAGATA
AACCCACCAGTCGGGTTTTGGTGAGCGATGGACAGCGGGCGGATCGGCAA
CGCACCAGCGGAGCGAGGGGAAAGGGGGCGGGCGCCGGAACAGCGAGCGG
GGAAACAATCAATGGGGAAAGTTGGTGTGCCGGAGGTGCGGGAGACGGCG
AGGAGGGAGTGGAGGTGACGCAAGGCGCACAACAACCGCACCAGGCGGTG
CGTGTCGTGGTGCACGAGGTGGGTGACGAAACCGGCCCGAGGAATGCTCA
TCGCAGTGGCAGAGGTTTATGCTTTTTGCGTTTCCCCTTTGCTCGTCAGT
GACGAAATCTCTACCTGCTGTGGGACACGTGTGCCGCCCATCTCCTCTTG
TGGCACGCTTGGCGATGGCAGATGATGGTTCCTGCGTTAAACCTGCACGA
TGTCTCGCTACGAGTGTGTGGGCATGGGCAGCCTGGCAAAGGGTCCTCAC
TGCACAAATGTGGTACCGACTGGTGTTGAGTATCATAAGCGCAAACACAC
TTGTCCACCGTCCTCGCTTGGAGCATCTCTCAAGAACCATTAGTGGGTAT
TCTGATATTTGAGTGCAGGCGTGTCAACGGAATTCCGGTTGGAAGAACCA
CAGGAACATGCGGGAGGACAAATAACTCGCGACTGACGGATCAAGCAAGG
GGTTTATTGCAACCACCTGTCGAATGAATTTCACCCCTCCCCCGTGGCCA
CCCCATTCCATGGGCACGCCATAATTCAGGTTTTGTCGGAGGACTTCGGG
TTGTTCACATGGCCCTCTGGGGTAGTGCTGGCGTGCCTCGTCTGGGCTAG
GAGGCGAGAGTTTGACGGGGCGAGCGTCGTGGAGATCGGTGCTGGAACCG
CGCTGCCTGGCCTGCTCGCCGCCAAGGTGTGTGCACGCGACTGAACCCTT
TTCGCACGCCATGGGACCCCTCCGAAATAATCCGGGGCTTCTCGCCTATT
ACTGACATGGGCACGGCCCGCTGGGAAACACTTCTCGATCACGACCCCCC
CCCCCCTCCTCCGATCTAAGTTGCTACTGCAACACGCGCATCCGAACAGC
GCCTGCGGGACTGGATGCTGCGTTTGTACAAAAAGGTCAAGAAACGTTGT
TGCGTGCGCTGCAGACCGTGTTGGTTACATTGTGGGCCTCGCATTTGTCA
ATTGTCTCTTGCTCCTGGCAGCTAGGGGCCAGCGTGGTGCTCACCGACCG
GGAGGAGGCCCCGTGGGTCCTCGACAATATGCGAGGGGCCGTCGCGGAAA
ACGGGCTCAATCGCGGGCCCCCCGATGACGCTAGCCCTGACATCGGCACT
GCCACCGCTGAAACTGCCGGTGCTGACACTGTCAGTGCTGCTGCTCGTGC
CATTGCTGGTGGTGGTAGTGGTCCCAGCATTGACGCTGCTGCTGCTCCTG
CTGCTGGGGCTGCAGCGGGGGGGTGGGTAATAGAGTGGCAGAGCAAGGAC
AAACGGATAGGGGCCTGGGAGCCTGACGGGCGGGGGACCGCCGGACACTC
TAGTCTCGCTCCATCTGTTGCTGCTACCGCTGCTGCTGGGGCTAAGTCGT
TCCCGAGAAACCAGGAGCAAGGGACTACGAGAGAAGGGCGTGTCGGTGGG
ACGACGCGGCTAGGACATTGTTCGGTGCAGGGACTCTCCTGGGGAAGCGT
CGGGGCGGCGGCGATCAAGCTAGCGAGAGAGCGGCGCCCTCAGGTGAGAG
AGGGTTTTAGTCCTATTTTGGTTGTTTGTCCGAACGACTTCGGTCTCAAG
TCTCAGCAAACGTACGAAGACCCTGCAAGCCATTGTACTTACCGTAGCTG
GCATACGACATCACAGACCCTGGACCGTTTTTCAAGGCTCGACTATTCCG
CGGCAGAAGAGAGTGGTGGTTCCGACGACAGCAGCATTGGAACCGTCTCA
TCCAGAGATTTCCGATAACGTACTGTTTGATTTGATGTGTCATCTTTGTC
GTGGAGGATTCGAGCCTTGAAAATCGGTCCAGGGGGTGTGATATCTTGAG
CCACCCCCATTACTACCCTTGCATGGAGGGACACGAGGGCATGAGTTGAA
CCGTCCCGTCTTAGGGGAGGTGATGGATCGGAGAAATTTGCTGTTGTTTA
CTTTAGTTGCGTCGGAGACGCAGTAGTCTACCTCATGAAACAAGTCAAAC
TCGTGCACAGCTTTCGGTGTACGTTGAGGGCCGTGCATCCTGGCCGTTGT
AGCGGCGTGTTGTTGGATGGTCAGACACATGGGTTCACGCCTTTGAAGAC
CAGTTCGCGATGGGGTTAGATACTGTAGCAACGAATCGGCAACGTGTGAC
GAGGAAAAGAGATGATATCTACACATCTCGTGTTCGCGTGGGTGGCAGTT
GCTGGAACTACGTTGATGTTACTGCAGCCCTCTCTTGGTCTGTCACGTAC
AGTACGAAATGGAGTTTATCCGACAGAGCTCGATATGATTTTGTTTAAAC
GCGAGTGGCACCTGCTGCTGCATTCCTCTCTACTTCGCCCTTCCATTCTC
CATCGGACCGGACCTCAAAATTCTCGAATCAACCCCCCGCGCCCCCTCAC
TGCTGTGTGTAGGGCTCGCTCCTCCCTGGTATTTGTGGGATGTTGACTGG
GGCCGCCATGGTGGTAAACGATTTTTTCATGTGTCGCGTGCTGTTGGCCT
CGCCACAGGTGGTGCTAGGGGCAGACGTGTTCTACAGCTCGGAGCACTTT
AACGATGTTCTGGCG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19416:3..3267-

>mRNA_Ecto-sp13_S_contig19416.6230.1 ID=mRNA_Ecto-sp13_S_contig19416.6230.1|Name=mRNA_Ecto-sp13_S_contig19416.6230.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1374bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19416:3..3267- (Ectocarpus species13 EcNAP12_S_4_19m)
GACGGGACACCACTGCCACCCTTGCGGCCAACGCTATCACCATCACCATC
CTCGGCGTCGTCATGTTCGGTGGACGACGACCGTCCCCTGTCCCCTGACG
GTGATCAAGCCGCGCTCTTGGCGAGTACCACTCGACGAAAACGAAGCCGC
TCTTGGAGCAACAGCAGTAGTCCGACTTCTACCGGTAGCAAGACCGCGAA
CAACAACCGGCCGTGCCGTCGTCCGGCAATCAGGACCGCCAACAGCGGGG
ACGACTGTTATCGTGACTGCGGCGGGCCAACCAGAGGCGAAGAGGTCGGA
GACGGACCCACGAGGGGTCACAACGGACAGGACCTACAACGACTCGGAGG
GGACCATGTTGGCAACGGCGGCTGTTCGCCGGTCACCGAGGAGACGCCGC
TTGACGCGCGTAAAGGAAGAGAGAAGAAGTCTGGTGGATCACCAGGAAGC
GATGCCCTTTCACCCGGACCAGCAGTCGAGGCGAACGGATCCGGCGTTGG
ATCGTCATCCTTGCCTGACGAGGGAGAGGAGGGTACCGCTGCTGCAGATA
AACCCACCAGTCGGGTTTTGGTGAGCGATGGACAGCGGGCGGATCGGCAA
CGCACCAGCGGAGCGAGGGGAAAGGGGGCGGGCGCCGGAACAGCGAGCGG
GGAAACAATCAATGGGGAAAGTTGGTGTGCCGGAGGTGCGGGAGACGGCG
AGGAGGGAGTGGAGGTGACGCAAGGCGCACAACAACCGCACCAGGCGGTG
CGTGTCGTGGTGCACGAGGTTTTGTCGGAGGACTTCGGGTTGTTCACATG
GCCCTCTGGGGTAGTGCTGGCGTGCCTCGTCTGGGCTAGGAGGCGAGAGT
TTGACGGGGCGAGCGTCGTGGAGATCGGTGCTGGAACCGCGCTGCCTGGC
CTGCTCGCCGCCAAGCTAGGGGCCAGCGTGGTGCTCACCGACCGGGAGGA
GGCCCCGTGGGTCCTCGACAATATGCGAGGGGCCGTCGCGGAAAACGGGC
TCAATCGCGGGCCCCCCGATGACGCTAGCCCTGACATCGGCACTGCCACC
GCTGAAACTGCCGGTGCTGACACTGTCAGTGCTGCTGCTCGTGCCATTGC
TGGTGGTGGTAGTGGTCCCAGCATTGACGCTGCTGCTGCTCCTGCTGCTG
GGGCTGCAGCGGGGGGGTGGTCGTTCCCGAGAAACCAGGAGCAAGGGACT
ACGAGAGAAGGGCGTGTCGGTGGGACGACGCGGCTAGGACATTGTTCGGT
GCAGGGACTCTCCTGGGGAAGCGTCGGGGCGGCGGCGATCAAGCTAGCGA
GAGAGCGGCGCCCTCAGGTGGTGCTAGGGGCAGACGTGTTCTACAGCTCG
GAGCACTTTAACGATGTTCTGGCG
back to top