mRNA_Ecto-sp13_S_contig19413.6229.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig19413.6229.1
Unique NamemRNA_Ecto-sp13_S_contig19413.6229.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig19413.6229.1 vs. uniprot
Match: A0A6H5JAA6_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAA6_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 1.410e-6
Identity = 35/45 (77.78%), Postives = 36/45 (80.00%), Query Frame = 2 
Query:  386 ATPVAEEHRSVGGVEATATEASAAPAAASTGPLVPATPLPPVLTS 520
            AT  A EHRSVGGV+ TA  ASAAP AASTG LVPATPLPPVL S
Sbjct:   63 ATAAAAEHRSVGGVDRTAVAASAAPVAASTGALVPATPLPPVLAS 107
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig19413.6229.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JAA6_9PHAE1.410e-677.78RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig19413contigEcto-sp13_S_contig19413:2304..2823 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size520
Hectar predicted targeting categoryother localisation
Exons1
Cds size321
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462985.407626-UTR-Ecto-sp13_S_contig19413:2303..25021681462985.407626-UTR-Ecto-sp13_S_contig19413:2303..2502Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig19413 2304..2502 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462985.4194646-CDS-Ecto-sp13_S_contig19413:2502..28231681462985.4194646-CDS-Ecto-sp13_S_contig19413:2502..2823Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig19413 2503..2823 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig19413.6229.1prot_Ecto-sp13_S_contig19413.6229.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig19413 2503..2823 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig19413.6229.1

>prot_Ecto-sp13_S_contig19413.6229.1 ID=prot_Ecto-sp13_S_contig19413.6229.1|Name=mRNA_Ecto-sp13_S_contig19413.6229.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=107bp
MEENDRGGGAGPAPTPLHQAPLTGPPLPSPEPQDAGGSGGRSGSNGGGNT
DGAGGVKRKRLLATPVAEEHRSVGGVEATATEASAAPAAASTGPLVPATP
LPPVLTS
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mRNA from alignment at Ecto-sp13_S_contig19413:2304..2823+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig19413.6229.1 ID=mRNA_Ecto-sp13_S_contig19413.6229.1|Name=mRNA_Ecto-sp13_S_contig19413.6229.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=520bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19413:2304..2823+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGGGGCTCCGCACACGAAACAATACACACTGGGGTCTGCGCCAAGTCC
TGAGCGAGAGACAGAGAGCGATCAGGAAACGAGACTCTCAGAACAGAACG
AGGAAAAGTGAGAAGCTGCACTACACGGGCGTTACGGCAGTATAAGGGGT
TACCCTGCCCCGCCGTACACCGCGTACCAGCATCCAACAATAGCCGACAA
TGGAAGAGAATGACCGGGGGGGCGGGGCGGGGCCAGCGCCAACCCCCCTT
CACCAGGCACCCCTGACCGGGCCGCCTTTGCCGTCTCCAGAACCCCAAGA
CGCCGGGGGCAGTGGTGGCAGGAGCGGCAGCAACGGCGGCGGTAATACCG
ATGGTGCAGGCGGCGTAAAGCGTAAGCGGCTGTTGGCTACTCCTGTCGCG
GAGGAACATCGTTCGGTTGGTGGCGTCGAGGCAACCGCAACAGAAGCTTC
TGCCGCGCCTGCTGCCGCCTCTACCGGCCCACTAGTTCCAGCGACGCCGT
TGCCGCCTGTCCTCACTTCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig19413:2304..2823+

>mRNA_Ecto-sp13_S_contig19413.6229.1 ID=mRNA_Ecto-sp13_S_contig19413.6229.1|Name=mRNA_Ecto-sp13_S_contig19413.6229.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=321bp|location=Sequence derived from alignment at Ecto-sp13_S_contig19413:2304..2823+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAAGAGAATGACCGGGGGGGCGGGGCGGGGCCAGCGCCAACCCCCCT
TCACCAGGCACCCCTGACCGGGCCGCCTTTGCCGTCTCCAGAACCCCAAG
ACGCCGGGGGCAGTGGTGGCAGGAGCGGCAGCAACGGCGGCGGTAATACC
GATGGTGCAGGCGGCGTAAAGCGTAAGCGGCTGTTGGCTACTCCTGTCGC
GGAGGAACATCGTTCGGTTGGTGGCGTCGAGGCAACCGCAACAGAAGCTT
CTGCCGCGCCTGCTGCCGCCTCTACCGGCCCACTAGTTCCAGCGACGCCG
TTGCCGCCTGTCCTCACTTCG
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